>HRH1_PANTR (Q9N2B2) Histamine H1 receptor|
          Length = 487

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 154 PLRSAREGSDLDALVAERGHGCVVGAEEAVGRDEGEEDVSDDRAEGD 294
           P+++A EGS  D +   + HG +   E+ +    G  ++S+D+  GD
Sbjct: 309 PMQTAAEGSSRDYVAVNQSHGQLKTDEQGL-NTHGASEISEDQMLGD 354

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAR---EGSDLDALVAERGHGCVVGAEEAVGRDEGE--EDVSD 276
           P  QP P   +AR   R       G         R  G    A +A   ++G+  ED  +
Sbjct: 292 PPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAADAEEEEDGDGDEDEDE 351

Query: 277 DRAEGDGHRRPG 312
           DRAEG+G    G
Sbjct: 352 DRAEGEGREDGG 363

>LPXD_XANCP (Q8PAW3) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase|
           (EC 2.3.1.-)
          Length = 337

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +1

Query: 76  TTYVRVST-FEF*PMKQPKPEATAARDPLRSAREGSDLDALVA-----ERGHGCVVGAEE 237
           T + +++  F+  P++ P   A+A  DP  +    + +   V+       G GCV+GA  
Sbjct: 80  TAFAKIAALFDVAPVRAPGIHASAVIDPTATVSPTAHVGPFVSIGAGSRVGDGCVIGAGS 139

Query: 238 AVGRD 252
            +G D
Sbjct: 140 IIGED 144

>LPXD_XANAC (Q8PML5) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase|
           (EC 2.3.1.-)
          Length = 337

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +1

Query: 76  TTYVRVST-FEF*PMKQPKPEATAARDPLRSAREGSDLDALVA-----ERGHGCVVGAEE 237
           T + +++  F+  P+++P   A+A  DP       + +   V+       G GCV+G   
Sbjct: 80  TAFAKIAALFDLAPVREPGIHASAVIDPTAQVSATAHVGPFVSIGARSRVGDGCVIGTGS 139

Query: 238 AVGRD 252
            +G D
Sbjct: 140 IIGED 144

>HRH1_HUMAN (P35367) Histamine H1 receptor|
          Length = 487

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 157 LRSAREGSDLDALVAERGHGCVVGAEEAVGRDEGEEDVSDDRAEGD 294
           +++A EGS  D +   R HG +   E+ +    G  ++S+D+  GD
Sbjct: 310 MQAAAEGSSRDYVAVNRSHGQLKTDEQGL-NTHGASEISEDQMLGD 354

>FBIC_MYCLE (Q9CBX6) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 863

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAREGSDL---DALVAERGHG---CVVGAEEAVGRDEGEEDVS 273
           P+  PKP  +A R  LR AR+G  L   +A+VA    G     + A  A  RD G E   
Sbjct: 22  PVVPPKPNTSALRRVLRRARDGFALNIDEAVVAMTARGEDLADLCASAARVRDVGLETAG 81

Query: 274 DDRAEG 291
              A+G
Sbjct: 82  RRGADG 87

>FUSA_BURCE (P24126) Fusaric acid resistance protein fusA precursor|
          Length = 530

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 223 VGAEEAVGRDEGEEDVSDDRAEGDGHRRPG 312
           +GA  A  R  G     DDR    GHRRPG
Sbjct: 371 LGAANAGVRPGGRAIQPDDRRRAQGHRRPG 400

>SWA_DROME (P40688) Protein swallow|
          Length = 548

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 181 DLDALVAERGHGCVVGAEEAVGRDEGEEDVSDDRAEGDGHR 303
           D D  VA +     V   + VGRD+ +ED  D+  +GD H+
Sbjct: 57  DADGDVANKSAKTCVS--DPVGRDQEDEDDYDEDVDGDDHK 95

>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 633

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAREGSDLDALVAERGHGCVVGAEEAVGRDEGEEDVSDDR--- 282
           P K P PE T A  P+   +E  D++ + +E             G+D G ED  D     
Sbjct: 448 PQKPPTPEETKAASPV--LQEDIDIEGVQSE-------------GQDNGAEDSGDTEDEL 492

Query: 283 ---AEGDGHRRP 309
              AE   HR P
Sbjct: 493 RRVAEQKEHRLP 504

>TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80)
          Length = 678

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAREGSDLDALVAERGHGCVVGAEEAVGRDE 255
           P +Q K EAT   +PL+SA+ G + D  +  +G G    A +  G+++
Sbjct: 153 PKEQQKAEAT---EPLKSAKPGQEEDGPLKGKGQG--AAAADGKGKEK 195

>TAF6_MOUSE (Q62311) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80)
          Length = 678

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAREGSDLDALVAERGHGCVVGAEEAVGRDE 255
           P +Q K EAT   +PL+SA+ G + D  +  +G G    A +  G+++
Sbjct: 153 PKEQQKAEAT---EPLKSAKPGQEEDGPLKGKGQG--AAAADGKGKEK 195

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +1

Query: 157  LRSARE--GSDLDALVAERGHGCVVG----AEEAVGRDEGEEDVSDDR-AEGDGHR 303
            +R+A E  G DLDA       G  +      EE    DEGE+D+ DD   +GDG R
Sbjct: 2573 MRAAMENAGDDLDAEPIRDFDGHYIDDDEDGEEDDDEDEGEDDMDDDMYFDGDGLR 2628

>LPXD_HAEDU (Q7VM24) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase|
           (EC 2.3.1.-)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 140 VASGFGCFMGQNSKVETRTYVVVSLCV 60
           +  G GCF+G+N+K+  R+++  ++ V
Sbjct: 136 ITIGAGCFIGKNTKIGARSHLWANISV 162

>TAF6_HUMAN (P49848) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80)
          Length = 677

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 112 PMKQPKPEATAARDPLRSAREGSDLDALVAERGHG 216
           P +Q K EAT   +PL+SA+ G + D  +  +G G
Sbjct: 153 PKEQQKAEAT---EPLKSAKPGQEEDGPLKGKGQG 184

>TRUB_THIDA (Q3SKX3) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 298

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 203 SATRASRSLPSRAERRGSLAAVASGFGCFMG 111
           ++ R  RS+P  A+RRG L  V  G G F+G
Sbjct: 249 ASLRQGRSVPDAADRRG-LVRVYDGHGVFVG 278

>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 194 RASRSLPSRAERRGSLAAVASGFGCFMGQNSKVETR 87
           R +RSLPS  ERR   AA A G  C  G + K+  R
Sbjct: 70  RRARSLPSSPERR-QKAAGAPGAACRPGCSQKLRVR 104

>F10C1_RAT (Q5FVF1) Protein FRA10AC1 homolog|
          Length = 315

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 118 KQPKPEATAARDPLRSAREGSDLDALVA-ERGHGCVVGAEEAVGRDEGEEDVSDD 279
           K+ K +  +   P +++R  S  +A    + GH     +E++  R+ GEED + D
Sbjct: 232 KRSKTKTESDESPHKNSRSSSSEEASQGKDEGHSSSKRSEDSRNRNAGEEDSASD 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,430,124
Number of Sequences: 219361
Number of extensions: 714883
Number of successful extensions: 2374
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)