| Clone Name | rbast39d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190249.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 972 Score = 149 bits (75), Expect = 9e-33 Identities = 152/178 (85%) Strand = Plus / Minus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 934 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 875 Query: 303 atttgatcaccgcctcaagctttttcttgtcttgcaatgccgatggatcttggacaatnt 362 |||| ||| | |||||||||| |||| |||||||| | |||||||| |||||||| Sbjct: 874 atttaatcgcttcctcaagcttcttctgatcttgcaacgatgatggatcctggacaattc 815 Query: 363 ttcggagcagggaaccaataaatgcatcaccagcacctgtcgtatcaacttgctgtac 420 |||| ||||| | ||||| ||| |||||||| |||||||| ||||||||||||||||| Sbjct: 814 ttcgcagcagagcaccaacaaacgcatcacctgcacctgttgtatcaacttgctgtac 757
>gb|AF429948.1| Oryza sativa putative fructokinase I mRNA, complete cds Length = 1135 Score = 149 bits (75), Expect = 9e-33 Identities = 152/178 (85%) Strand = Plus / Minus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 995 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 936 Query: 303 atttgatcaccgcctcaagctttttcttgtcttgcaatgccgatggatcttggacaatnt 362 |||| ||| | |||||||||| |||| |||||||| | |||||||| |||||||| Sbjct: 935 atttaatcgcttcctcaagcttcttctgatcttgcaacgatgatggatcctggacaattc 876 Query: 363 ttcggagcagggaaccaataaatgcatcaccagcacctgtcgtatcaacttgctgtac 420 |||| ||||| | ||||| ||| |||||||| |||||||| ||||||||||||||||| Sbjct: 875 ttcgcagcagagcaccaacaaacgcatcacctgcacctgttgtatcaacttgctgtac 818 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 1107 tgctcctgatccagatcagcatacaatacaatttgc 1072
>dbj|AK120887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029D05, full insert sequence Length = 1216 Score = 149 bits (75), Expect = 9e-33 Identities = 152/178 (85%) Strand = Plus / Minus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 800 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 741 Query: 303 atttgatcaccgcctcaagctttttcttgtcttgcaatgccgatggatcttggacaatnt 362 |||| ||| | |||||||||| |||| |||||||| | |||||||| |||||||| Sbjct: 740 atttaatcgcttcctcaagcttcttctgatcttgcaacgatgatggatcctggacaattc 681 Query: 363 ttcggagcagggaaccaataaatgcatcaccagcacctgtcgtatcaacttgctgtac 420 |||| ||||| | ||||| ||| |||||||| |||||||| ||||||||||||||||| Sbjct: 680 ttcgcagcagagcaccaacaaacgcatcacctgcacctgttgtatcaacttgctgtac 623 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 912 tgctcctgatccagatcagcatacaatacaatttgc 877
>dbj|AK060500.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F08, full insert sequence Length = 1380 Score = 149 bits (75), Expect = 9e-33 Identities = 152/178 (85%) Strand = Plus / Minus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 1156 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 1097 Query: 303 atttgatcaccgcctcaagctttttcttgtcttgcaatgccgatggatcttggacaatnt 362 |||| ||| | |||||||||| |||| |||||||| | |||||||| |||||||| Sbjct: 1096 atttaatcgcttcctcaagcttcttctgatcttgcaacgatgatggatcctggacaattc 1037 Query: 363 ttcggagcagggaaccaataaatgcatcaccagcacctgtcgtatcaacttgctgtac 420 |||| ||||| | ||||| ||| |||||||| |||||||| ||||||||||||||||| Sbjct: 1036 ttcgcagcagagcaccaacaaacgcatcacctgcacctgttgtatcaacttgctgtac 979 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 1268 tgctcctgatccagatcagcatacaatacaatttgc 1233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 38878635 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 38878694 Query: 303 atttgatcaccgcctcaagctttttct 329 |||| ||| | |||||||||| |||| Sbjct: 38878695 atttaatcgcttcctcaagcttcttct 38878721 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 344 gatggatcttggacaatntttcggagcagggaaccaataaatgcatcaccagcacctgtc 403 |||||||| |||||||| |||| ||||| | ||||| ||| |||||||| |||||||| Sbjct: 38878828 gatggatcctggacaattcttcgcagcagagcaccaacaaacgcatcacctgcacctgtt 38878887 Query: 404 gtatcaacttgctgtac 420 ||||||||||||||||| Sbjct: 38878888 gtatcaacttgctgtac 38878904 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 38878523 tgctcctgatccagatcagcatacaatacaatttgc 38878558
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 151517 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 151576 Query: 303 atttgatcaccgcctcaagctttttct 329 |||| ||| | |||||||||| |||| Sbjct: 151577 atttaatcgcttcctcaagcttcttct 151603 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 344 gatggatcttggacaatntttcggagcagggaaccaataaatgcatcaccagcacctgtc 403 |||||||| |||||||| |||| ||||| | ||||| ||| |||||||| |||||||| Sbjct: 151710 gatggatcctggacaattcttcgcagcagagcaccaacaaacgcatcacctgcacctgtt 151769 Query: 404 gtatcaacttgctgtac 420 ||||||||||||||||| Sbjct: 151770 gtatcaacttgctgtac 151786 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 151405 tgctcctgatccagatcagcatacaatacaatttgc 151440
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccacatgcgttggcaa 302 |||||| ||| ||||||||||||||||| ||||||||||||||||| || || ||||||| Sbjct: 43421 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 43480 Query: 303 atttgatcaccgcctcaagctttttct 329 |||| ||| | |||||||||| |||| Sbjct: 43481 atttaatcgcttcctcaagcttcttct 43507 Score = 75.8 bits (38), Expect = 1e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 344 gatggatcttggacaatntttcggagcagggaaccaataaatgcatcaccagcacctgtc 403 |||||||| |||||||| |||| ||||| | ||||| ||| |||||||| |||||||| Sbjct: 43614 gatggatcctggacaattcttcgcagcagagcaccaacaaacgcatcacctgcacctgtt 43673 Query: 404 gtatcaacttgctgtac 420 ||||||||||||||||| Sbjct: 43674 gtatcaacttgctgtac 43690 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 135 tgctcctgatccagaacagcgtacaatacaatttgc 170 ||||||||||||||| |||| ||||||||||||||| Sbjct: 43309 tgctcctgatccagatcagcatacaatacaatttgc 43344
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 69.9 bits (35), Expect = 6e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 376 accaataaatgcatcaccagcacctgtcgtatcaa 410 ||||||||||||||||||||||||||||||||||| Sbjct: 872002 accaataaatgcatcaccagcacctgtcgtatcaa 871968
>gb|AY104222.1| Zea mays PCO070293 mRNA sequence Length = 1331 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 243 tgggcaatgaagggattgcccctttcttcgtggcggtgattgctccaca 291 ||||||| || ||||| || || |||||||||||||||||||||||||| Sbjct: 1040 tgggcaaagacgggatcgcacccttcttcgtggcggtgattgctccaca 992
>gb|U64817.1|LEU64817 Lycopersicon esculentum fructokinase (Frk1) mRNA, complete cds Length = 1887 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 376 accaataaatgcatcaccagcacctgtcgtatcaac 411 |||| ||||||||||||||||||| || |||||||| Sbjct: 1137 accagtaaatgcatcaccagcaccagttgtatcaac 1102
>ref|XM_776308.1| PREDICTED: Strongylocentrotus purpuratus similar to ribokinase (LOC575948), mRNA Length = 810 Score = 46.1 bits (23), Expect = 0.092 Identities = 35/39 (89%) Strand = Plus / Minus Query: 374 gaaccaataaatgcatcaccagcacctgtcgtatcaact 412 |||||||| ||||||||||| || ||||| ||||||||| Sbjct: 662 gaaccaatgaatgcatcacctgctcctgtggtatcaact 624
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgtcgtatcaact 412 |||||||||||| ||||| |||||||||||| Sbjct: 1935262 aaatgcatcacctgcaccggtcgtatcaact 1935232
>ref|NM_127294.3| Arabidopsis thaliana protein binding / transcription regulator AT2G17390 mRNA, complete cds Length = 1427 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 49 ttgcaatcacaaacaaaaaaccctta 74 ||||||||||||| |||||||||||| Sbjct: 1366 ttgcaatcacaaagaaaaaaccctta 1391
>gb|AC004895.2| Homo sapiens PAC clone RP4-810E6 from 7, complete sequence Length = 152927 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 acaaacaaaaaacccttagtaa 78 |||||||||||||||||||||| Sbjct: 117265 acaaacaaaaaacccttagtaa 117286
>gb|AC133341.11| Medicago truncatula clone mth2-28i3, complete sequence Length = 138850 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Minus Query: 377 ccaataaatgcatcaccagcacctgtcgtatcaa 410 |||||||||||||| |||||||| || ||||||| Sbjct: 104916 ccaataaatgcatccccagcaccagtggtatcaa 104883 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgtcgtatcaa 410 |||||||||||| |||||||| ||||||| Sbjct: 99356 aaatgcatcaccggcacctgtagtatcaa 99328
>gb|AY142547.1| Arabidopsis thaliana clone RAFL08-16-B13 (R11303) mRNA sequence Length = 1683 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 49 ttgcaatcacaaacaaaaaaccctta 74 ||||||||||||| |||||||||||| Sbjct: 1606 ttgcaatcacaaagaaaaaaccctta 1631
>emb|AJ617685.1| Escherichia coli pathogenicity island V, strain 536 Length = 105801 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 aaccaataaatgcatcaccagc 396 |||||||||||||||||||||| Sbjct: 22503 aaccaataaatgcatcaccagc 22524
>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete sequence. Sequence from clones T23A1, F5J6, MJB20 Length = 76170 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 49 ttgcaatcacaaacaaaaaaccctta 74 ||||||||||||| |||||||||||| Sbjct: 58794 ttgcaatcacaaagaaaaaaccctta 58819
>gb|AC116501.7| Mus musculus chromosome 5, clone RP24-300D7, complete sequence Length = 174365 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acaaacaaaaaacccttagta 77 ||||||||||||||||||||| Sbjct: 131954 acaaacaaaaaacccttagta 131974
>ref|NM_105314.3| Arabidopsis thaliana kinase/ ribokinase AT1G66430 mRNA, complete cds Length = 1481 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 1076 aaatgcatcaccagcacctgt 1056
>gb|DQ235199.1| Solanum tuberosum clone 171E03 fructokinase-like mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 254 gggattgcccctttcttcgtggcggtgattgctccacatgc 294 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 1015 gggattgctcctttcttggtggttgtgatggctccacatgc 975
>gb|DQ235181.1| Solanum tuberosum clone 163C10 fructokinase-like mRNA, complete cds Length = 1245 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 254 gggattgcccctttcttcgtggcggtgattgctccacatgc 294 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 1015 gggattgctcctttcttggtggttgtgatggctccacatgc 975
>gb|AF530592.1| Petunia integrifolia subsp. inflata putative fructokinase 2 (S1-3.16) gene, complete cds Length = 9183 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 254 gggattgcccctttcttcgtggcggtgattgctccacatgc 294 |||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 7421 gggattgctcctttctttgtggttgtgatggctccacatgc 7381
>gb|AC125024.6| Mus musculus chromosome 5, clone RP24-320B23, complete sequence Length = 192305 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acaaacaaaaaacccttagta 77 ||||||||||||||||||||| Sbjct: 28605 acaaacaaaaaacccttagta 28625
>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research Institute) complete sequence Length = 237374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ggcaaaacaaaaaggcaagca 109 ||||||||||||||||||||| Sbjct: 114060 ggcaaaacaaaaaggcaagca 114040
>gb|BT000889.1| Arabidopsis thaliana clone C105365 putative fructokinase (At1g66430) mRNA, complete cds Length = 763 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 549 aaatgcatcaccagcacctgt 529
>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3 Contains part of the gene for InaD-like protein (INADL), complete sequence Length = 143226 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acaaacaaaaaacccttagta 77 ||||||||||||||||||||| Sbjct: 26752 acaaacaaaaaacccttagta 26732
>gb|AF370329.1| Arabidopsis thaliana putative fructokinase (At1g66430) mRNA, partial cds Length = 913 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 501 aaatgcatcaccagcacctgt 481
>gb|AC055120.5| Homo sapiens BAC clone RP11-336N6 from 4, complete sequence Length = 178524 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acaaacaaaaaacccttagta 77 ||||||||||||||||||||| Sbjct: 105081 acaaacaaaaaacccttagta 105061
>emb|BX818723.1|CNS0AE7C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZH09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 732 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 329 aaatgcatcaccagcacctgt 309
>emb|BX816698.1|CNS0ABXO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1420 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 1050 aaatgcatcaccagcacctgt 1030
>emb|BX815331.1|CNS0ABBH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS52ZE04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1398 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 1043 aaatgcatcaccagcacctgt 1023
>gb|AC020665.6|AC020665 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete sequence Length = 85702 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 81651 aaatgcatcaccagcacctgt 81631
>gb|AC074025.1|AC074025 Arabidopsis thaliana chromosome 1 BAC F28G11 genomic sequence, complete sequence Length = 63773 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 aaatgcatcaccagcacctgt 402 ||||||||||||||||||||| Sbjct: 56011 aaatgcatcaccagcacctgt 56031
>ref|XM_312327.2| Anopheles gambiae str. PEST ENSANGP00000010594 (ENSANGG00000008105), partial mRNA Length = 912 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 380 ataaatgcatcaccagcacctgtcgtatc 408 |||||||||||||||||||| || ||||| Sbjct: 785 ataaatgcatcaccagcacccgttgtatc 757
>gb|AC118025.18| Mus musculus chromosome 6, clone RP23-461L9, complete sequence Length = 198895 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 aacaaaaaacccttagtaaa 79 |||||||||||||||||||| Sbjct: 37569 aacaaaaaacccttagtaaa 37588
>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence Length = 217989 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaaacaaaaaggcaagcaggggta 115 |||||||||||| ||||||||||| Sbjct: 168178 aaaacaaaaaggaaagcaggggta 168155
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence Length = 246921 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaaacaaaaaggcaagcaggggta 115 |||||||||||| ||||||||||| Sbjct: 71215 aaaacaaaaaggaaagcaggggta 71192
>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland Research Institute) complete sequence Length = 237247 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gcaaaacaaaaaggcaagca 109 |||||||||||||||||||| Sbjct: 161972 gcaaaacaaaaaggcaagca 161991
>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five novel genes, two novel pseudogenes and the gene for a novel protein similar to the olfactory receptor family, complete sequence Length = 153649 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 96005 aatagggcaaaacaaaaagg 95986
>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a pseudogene similar to part of DEAD/H box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two novel pseudogenes, nine novel genes, two novel proteins similar to the olfactory receptor family, a capicua homolog (Drosophila) (CIC) pseudogene and two CpG islands, complete sequence Length = 166904 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 84660 aatagggcaaaacaaaaagg 84679
>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains putative novel gene, complete sequence Length = 53890 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 41891 aatagggcaaaacaaaaagg 41872
>emb|AL390765.17| Human DNA sequence from clone RP11-509I1 on chromosome 1 Contains the 5' end of the GNG4 gene for guanine nucleotide binding (G protein) gamma 4 protein, the 3' end of the CHS1 gene for Chediak-Higashi syndrome 1 protein and a CpG island, complete sequence Length = 80101 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gattgcccctttcttcgtgg 275 |||||||||||||||||||| Sbjct: 5517 gattgcccctttcttcgtgg 5498
>emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 2/11 Length = 324050 Score = 40.1 bits (20), Expect = 5.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 376 accaataaatgcatcaccagcacctgtcgtatcaac 411 ||||||||||| ||| ||||| || ||||||||||| Sbjct: 104962 accaataaatgaatccccagcgccagtcgtatcaac 104927
>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence Length = 191037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 acaaacaaaaaacccttagt 76 |||||||||||||||||||| Sbjct: 38768 acaaacaaaaaacccttagt 38787
>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence Length = 157951 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 4496 aatagggcaaaacaaaaagg 4477
>gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, complete sequence Length = 165618 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gattgcccctttcttcgtgg 275 |||||||||||||||||||| Sbjct: 162542 gattgcccctttcttcgtgg 162561
>gb|AF316500.1|AF316500 Leptospira interrogans strain L170 rfb locus, complete sequence Length = 34723 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 gataagaattgcaatcacaaacaaaaaa 68 ||||||||||||||||| ||||| |||| Sbjct: 10153 gataagaattgcaatcaaaaacataaaa 10126
>dbj|AK032510.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430575D21 product:hypothetical Microbodies C-terminal targeting signal/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain containing protein, full insert sequence Length = 2399 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaaacaaaaaggcaagcaggggta 115 |||||||||||| ||||||||||| Sbjct: 2097 aaaacaaaaaggaaagcaggggta 2074
>dbj|AK043710.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830022O03 product:hypothetical Microbodies C-terminal targeting signal/LDL-receptor class A (LDLRA) domain profile/CUB domain/Low density lipoprotein (LDL)-receptor class A (LDLRA) domain/CUB domain profile containing protein, full insert sequence Length = 3803 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaaacaaaaaggcaagcaggggta 115 |||||||||||| ||||||||||| Sbjct: 2566 aaaacaaaaaggaaagcaggggta 2543
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acgccttctccatcagccgc 226 |||||||||||||||||||| Sbjct: 21091482 acgccttctccatcagccgc 21091501
>gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete sequence Length = 189557 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 126773 aatagggcaaaacaaaaagg 126754
>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence Length = 150642 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 28393 aatagggcaaaacaaaaagg 28412
>gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y, complete sequence Length = 177769 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 13803 aatagggcaaaacaaaaagg 13822
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 3536154 aatagggcaaaacaaaaagg 3536173 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 2512224 aatagggcaaaacaaaaagg 2512205
>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence Length = 120139 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 97614 aatagggcaaaacaaaaagg 97595
>gb|AF281920.1|AF281920 Homo sapiens clone 16qtel_c53bt7 sequence Length = 485 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 266 aatagggcaaaacaaaaagg 285
>gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, complete sequence Length = 38954 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 16751 aatagggcaaaacaaaaagg 16770
>gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, complete sequence Length = 35141 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 18550 aatagggcaaaacaaaaagg 18531
>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence Length = 121664 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 55375 aatagggcaaaacaaaaagg 55394
>gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, complete sequence Length = 16515 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 12598 aatagggcaaaacaaaaagg 12579
>gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, complete sequence Length = 36966 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 898 aatagggcaaaacaaaaagg 917
>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0696F12 Length = 165227 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acgccttctccatcagccgc 226 |||||||||||||||||||| Sbjct: 12843 acgccttctccatcagccgc 12862
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acgccttctccatcagccgc 226 |||||||||||||||||||| Sbjct: 134781 acgccttctccatcagccgc 134800
>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete sequence Length = 93321 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 38056 aatagggcaaaacaaaaagg 38037
>emb|AJ487038.1|CAR487038 Cicer arietinum partial mRNA for fructokinase-like protein, clone CanPFKB Length = 972 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 attgctccacatgcgttggcaaatttga 308 |||||||||||||| || |||||||||| Sbjct: 642 attgctccacatgcatttgcaaatttga 615
>gb|AC137743.3| Mus musculus BAC clone RP24-469M15 from 6, complete sequence Length = 170200 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 aacaaaaaacccttagtaaa 79 |||||||||||||||||||| Sbjct: 23883 aacaaaaaacccttagtaaa 23864
>gb|AY817111.1| Lycopersicon cheesmaniae peroxisomal acyl-CoA oxidase 1A (Acx1A) gene, complete cds Length = 30000 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 377 ccaataaatgcatcaccagcacctgtcgtatc 408 ||||||||||||||||| ||||| || ||||| Sbjct: 2806 ccaataaatgcatcacctgcaccggttgtatc 2837
>dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:CMC-68E4, telomere region, complete sequence Length = 40302 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatagggcaaaacaaaaagg 103 |||||||||||||||||||| Sbjct: 14091 aatagggcaaaacaaaaagg 14110
>emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chromosome 2, complete sequence Length = 169779 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gcaaaacaaaaaggcaagcagggg 113 |||||||| ||||||||||||||| Sbjct: 77709 gcaaaacagaaaggcaagcagggg 77732
>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151930 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gaaatagggcaaaacaaaaa 101 |||||||||||||||||||| Sbjct: 129342 gaaatagggcaaaacaaaaa 129323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,901,012 Number of Sequences: 3902068 Number of extensions: 4901012 Number of successful extensions: 99473 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99240 Number of HSP's gapped (non-prelim): 233 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)