ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast39d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROB1_AGRRH (P20402) Protein-tyrosine phosphatase rolB (EC 3.1.3.... 28 4.4
2MVIN_CHLMU (Q9PJB9) Virulence factor mviN homolog 27 9.9

>ROB1_AGRRH (P20402) Protein-tyrosine phosphatase rolB (EC 3.1.3.48) (ROL B|
           protein)
          Length = 259

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 2   KEMSVNFKIEICTVISTTLHKYHHELAPPQLIEFLFSKRTHRRQWEPTL 148
           KE S+ F +E   V++TT+  Y  ELA  +++        H R  EP L
Sbjct: 114 KEQSITFGME--AVLATTIQPYRSELALQEMLRVHNLAWPHSRTEEPDL 160



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>MVIN_CHLMU (Q9PJB9) Virulence factor mviN homolog|
          Length = 536

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 176 IHCKKEWLSVKLVPIVVDV 120
           +HC+K++LSV L P VV+V
Sbjct: 149 LHCEKKFLSVGLAPSVVNV 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,085,101
Number of Sequences: 219361
Number of extensions: 815866
Number of successful extensions: 1638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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