>Y703_ENCCU (Q8ST93) Hypothetical protein ECU07_0030/ECU09_2040|
          Length = 236

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   TINTETKSNNIKIQTNKGCVCHAVQIKRQQKSVLHGLVNP---RKNIYTSMFPKQQKKSQ 172
           T     +  + K++    CV H ++I   + S  H  ++    RK ++    PK   K +
Sbjct: 89  TAKHPARRQSCKLKAPNPCVGHPLRIPSPKHSPRHCTLHDIRHRKKLHPLNNPKGANKRK 148

Query: 173 VTAPQIQPTIAIKSPHPLTTKREREAS 253
            T P IQPT+    PHP+ +     +S
Sbjct: 149 -TPPLIQPTVLEPLPHPVLSPHNISSS 174

>CADH1_XENLA (P30944) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)|
           (xTCAD-1)
          Length = 872

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 57  VYVM-PSKSKDNKRVF-YMGWSIQERIYTLPCSQSNKRNLKLQHHKYSQPSQSNPHTH*R 230
           VY+  P+K KDN++ F  + W  +  +Y      S    LK + H++ Q   S  H+H  
Sbjct: 84  VYIKNPAKMKDNRKTFRVLAWETKGHVY------STNITLKREGHRHRQDLFSGKHSHHP 137

Query: 231 QRERGRLR 254
           + E G  R
Sbjct: 138 KSETGLKR 145

>EMS_DROME (P18488) Homeotic protein empty spiracles|
          Length = 497

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 68  AVQIKRQQKSV---LHGLVNPRKNIYTSMFPKQQKKSQVTAPQIQPTIAIKSPHPLTTKR 238
           AV +KR++      +    NP + I     P +    Q + P   PT+ I SPH    ++
Sbjct: 177 AVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVSPQSSQPSSSPTLLISSPHATPPQQ 236

Query: 239 EREASP 256
           +++  P
Sbjct: 237 QQQQPP 242

>TAF7_DROME (Q9VHY5) Transcription initiation factor TFIID subunit 7|
           (Transcription initiation factor TFIID 55 kDa subunit)
           (TAFII-55) (TAFII55)
          Length = 479

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 HGLVNPRKNIYTSMFPKQQKKSQVTAPQIQPTI 202
           HG+  P KN+    F K  KK  V AP+I+  +
Sbjct: 170 HGITPPCKNVRKRRFRKTLKKKNVEAPEIEKEV 202

>ECR_MANSE (P49883) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
          Length = 556

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149 PKQQKKSQVTAPQIQPTIAIKSPHPLTT-KREREASPRSRAQMKSAT 286
           P+QQ++ Q   P  QP  ++  P P TT K E E+    R ++  A+
Sbjct: 74  PQQQQQQQQQQPSAQPLPSMPLPMPPTTPKSENESMSSGREELSPAS 120

>YK03_YEAST (P36119) Hypothetical 60.8 kDa protein in YPT52-DBP7 intergenic|
           region
          Length = 530

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 152 KQQKKSQVTAPQIQPTIAIKSPHPLTTKREREASPRSRAQMKS 280
           K +KKS  T P +QP+      +P+  K+E     RS+ +++S
Sbjct: 116 KDEKKSSTTRPTVQPSNQSTQSNPIKEKKEH----RSKGKLQS 154

>YMS4_YEAST (Q05131) Hypothetical 48.4 kDa protein in ARP9-IMP2 intergenic|
           region
          Length = 434

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 162 FCCFGNMEVYIFFLGLTSPC 103
           F CF N+ +YIFF GL+  C
Sbjct: 269 FLCFFNLGIYIFFTGLSYLC 288

>RDRP_SJNNV (Q9QAZ8) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
           replicase) (Protein A)
          Length = 983

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 149 PKQQKKSQVTAPQIQPTIAIKSPHPLTTKREREASPRSRAQ 271
           PK  K ++     + PT  +  P+PLT   E +  P  RA+
Sbjct: 457 PKMHKVARDFVRHLVPTAGLGRPYPLTYVEEHQTKPLQRAR 497

>PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog)|
          Length = 2341

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 91  KECFTWAGQSKKEYIHFHVPKATKEISSYSTTNTANHRNQIPTPTDDKEREGGFAPVQSS 270
           KEC   AG  +K         ++++I+  ++TN+  H  + PTP+D+   + G +   S 
Sbjct: 431 KECC--AGPEEKNSCASDKRTSSEKIAMEASTNSGVHEAKDPTPSDEMHNQRGLSTSASE 488

Query: 271 NEIGDVHGH 297
               + H +
Sbjct: 489 EANKNPHAN 497

>THII_MYCGE (P47612) Probable thiamine biosynthesis protein thiI|
          Length = 385

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 71  VQIKRQQKSVLHGLVNPRKNIYTSMFPKQQKKSQVTAPQIQPTIAIKSPH 220
           +++KR+ K+      N +K +   +F K Q K  +  P+I   I I   H
Sbjct: 109 LEVKRRDKNFAENSSNFKKYLAVKLFEKYQLKGVINNPEIIANIEILKEH 158

>CXA10_HUMAN (P57773) Gap junction alpha-10 protein (Connexin-59) (Cx59)|
           (Connexin-58) (Cx58)
          Length = 515

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 121 KKEYIHFHVPKATKEISSYSTTNTANHRNQIPTPTD 228
           KKE+  FH  KA + ++ Y +T +AN   ++P+  D
Sbjct: 249 KKEHNEFHANKAKQNVAKYQST-SANSLKRLPSAPD 283

>AMYA_METJA (Q59006) Putative alpha-amylase (EC 3.2.1.1)|
          Length = 467

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   STLKQNLIISKSKRTKGVYVMPSKSKDNKR 95
           S +  N+I++K  +T+ +Y+   + K NKR
Sbjct: 428 SLINTNIIVAKDDKTESIYIEDEEGKKNKR 457

>SETBP_MOUSE (Q9Z180) SET-binding protein (SEB)|
          Length = 1535

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 113 VNPRKNIYTSMFPKQQKKSQVTAPQIQPTIAIKSPHPLTTKREREASPRS 262
           V+ R  IY      ++ ++++  P  +P  AIK P P++++ +  A P S
Sbjct: 659 VSKRGTIYIGKKRGRKPRTELPPPSEEPKTAIKHPRPVSSQPDVPAVPSS 708

>PYRD_BUCAP (Q8K9I5) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 336

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 118 SKKEYIHFHVPKATKEISSYSTTNTANHRNQIPTPTDDKEREGGFAPVQSSNEIGDV 288
           SKKE IH        +I     TNT    + IP   ++KE EGG + +    +  DV
Sbjct: 223 SKKELIHISNKLIHYKIDGVIATNTTLDHSSIPKIKNNKE-EGGLSGLPLQKKSNDV 278

>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 150 QSNKRNLKLQHHKYSQPSQSNPHTH*RQRERGR 248
           Q  + + + QHH++SQP Q + H   +Q +  +
Sbjct: 213 QQQQHHQQQQHHQHSQPQQQHQHNQQQQHQHNQ 245

>RP32_SERMA (P50510) RNA polymerase sigma-32 factor|
          Length = 285

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 76  NQKTTKECFTWAGQSKKEYIHFHVPKATKEISSYSTTNTANHRNQIPTPTDDKEREG-GF 252
           N + TK+   W  Q + E +   +   +K++    +   A      PTP DD+ R+G   
Sbjct: 138 NLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQDMTFDPTP-DDEARDGQSM 196

Query: 253 APV 261
           APV
Sbjct: 197 APV 199

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  YVMPSKSKDNKRVFYMGWSIQERI 131
           +VMPSK+K+ K++ Y  W I  ++
Sbjct: 67  FVMPSKNKELKKLLYFYWEIVPKL 90

>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3) (mTCF-3)
          Length = 584

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 KSQVTAPQIQPTIAIKSPHPLTTKREREASPRSRAQMKS 280
           K +  AP + P ++ KSP  +T K+E E  P  +  + +
Sbjct: 312 KQEPAAPSLSPAVSAKSP--VTVKKEEEKKPHVKKPLNA 348

>YNF8_YEAST (P53947) Hypothetical 35.0 kDa protein in ARP5-OMP2 intergenic|
           region
          Length = 316

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  VFYMGWSIQERIYTLPCSQSN-KRNLKLQHHKYSQPSQSNP 215
           ++++  S   R +T+  S +N  +NL   HHK+S   QSNP
Sbjct: 110 IWWLVSSYLSRRFTMTNSYANDSKNLYRGHHKHSSSLQSNP 150

>CCBS_MARPO (P36180) Probable cytochrome c biosynthesis protein|
          Length = 509

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 56  CVCHAVQIKRQQKSVLHGLVNPRKNIYTSMF-----PKQQKKSQVTAPQIQPTIAIKSPH 220
           C+C +  I RQQKS+        KNIY   F     PK+ ++ ++  P  + +   + P 
Sbjct: 229 CLCLSKIINRQQKSL--------KNIYIFFFPFLVKPKKGRRPEMAGPHTRTSPYSRVPF 280

Query: 221 PLTTKREREAS 253
                RE+  S
Sbjct: 281 GSLAHREQAKS 291

>SETBP_HUMAN (Q9Y6X0) SET-binding protein (SEB)|
          Length = 1542

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 113 VNPRKNIYTSMFPKQQKKSQVTAPQIQPTIAIKSPHPLTTKREREASP 256
           V+ R  IY      ++ ++++  P  +P  AIK P P++++ +  A P
Sbjct: 661 VSKRGTIYIGKKRGRKPRAELPPPSEEPKTAIKHPRPVSSQPDVPAVP 708

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 PKATKEISSYSTTNTANHRNQIPTPTDDKE 237
           P AT  + S STT+ ANH N   +  D++E
Sbjct: 245 PIATGNVKSGSTTSNANHTNSNNSHQDEEE 274

>SUUR_DROME (Q9VTE2) Protein suppressor of underreplication|
          Length = 962

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 128 NIYTSMFPKQQKKSQVTAPQIQPTIAIKSPHPLTTKREREASPRSR 265
           +I   MF  +Q++S  T+P++ PT+      PLT K + E++   R
Sbjct: 768 DILEQMFEPRQQQSAKTSPKVLPTL------PLTQKDDAESTITQR 807

>ASSY_ARCFU (O28032) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 390

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 211 IPTPTDDKEREGGFAPVQSSNEIGDVHG 294
           +P   +D ER GGF  +++ NEIG  HG
Sbjct: 220 VPVALND-ERMGGFELIKALNEIGGKHG 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,408,901
Number of Sequences: 219361
Number of extensions: 835229
Number of successful extensions: 3214
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3209
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)