| Clone Name | rbast39b11 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | VC04_SWPVK (P32228) Protein C4 | 29 | 2.4 | 2 | TORA_VIBCH (Q9KRF0) Trimethylamine-N-oxide reductase precursor (... | 28 | 4.1 | 3 | TORA_VIBPA (Q87QI7) Trimethylamine-N-oxide reductase precursor (... | 28 | 7.0 | 4 | TORA_SHEON (Q8EHI9) Trimethylamine-N-oxide reductase precursor (... | 27 | 9.2 | 5 | TORA_SHEMA (O87948) Trimethylamine-N-oxide reductase precursor (... | 27 | 9.2 |
|---|
>VC04_SWPVK (P32228) Protein C4| Length = 530 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%) Frame = -2 Query: 156 IYLCAIYDT-------VYNNSIVVARANCQLFRQQMWF----------EQAMCRIQSR*S 28 IY+CA YD +Y +IV+ + N +L Q + E+ +C I + Sbjct: 61 IYICADYDILYIILEFMYTGNIVLTKDNIELVIQVCDYLCIDSLIKICEEYICGIIDETN 120 Query: 27 CSHVSDFSD 1 C H+ +FSD Sbjct: 121 CIHLLNFSD 129
>TORA_VIBCH (Q9KRF0) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)| (TMAO reductase) (Trimethylamine oxidase) Length = 820 Score = 28.5 bits (62), Expect = 4.1 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2 Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCGEIAARHDG 355 WC+ + H E+ + +L AM QI GL G G S G H+S G + G Sbjct: 359 WCIQRQ----EHG---EQPYWMGAVLAAMIGQI--GLPGGGISYGHHYSGIGVPSTGFAG 409 Query: 356 ----VHNLDRGS 379 NLD+G+ Sbjct: 410 PGGFPRNLDQGA 421
>TORA_VIBPA (Q87QI7) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)| (TMAO reductase) (Trimethylamine oxidase) Length = 820 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = +2 Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCGEIAARHDG 355 WC+ + H E+ + ++ AM QI GL G G S G H+SS G + G Sbjct: 359 WCIQRQ----EHG---EQPYWAAAVVAAMVGQI--GLPGGGISYGHHYSSIGVPSTGFAG 409 Query: 356 ----VHNLDRG 376 NLD+G Sbjct: 410 PGGFPRNLDQG 420
>TORA_SHEON (Q8EHI9) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)| (TMAO reductase) (Trimethylamine oxidase) Length = 829 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +2 Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCG 331 WC+ + +H E+ + +L M QI GL G G S G H+SS G Sbjct: 359 WCIQRQ----QHG---EQPYWMAAVLATMIGQI--GLPGGGISYGHHYSSIG 401
>TORA_SHEMA (O87948) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)| (TMAO reductase) (Trimethylamine oxidase) Length = 829 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +2 Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCG 331 WC+ + +H E+ + +L M QI GL G G S G H+SS G Sbjct: 359 WCIQRQ----QHG---EQPYWMAAVLATMIGQI--GLPGGGISYGHHYSSIG 401 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,281,319 Number of Sequences: 219361 Number of extensions: 925921 Number of successful extensions: 2260 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2259 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)