ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast39b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VC04_SWPVK (P32228) Protein C4 29 2.4
2TORA_VIBCH (Q9KRF0) Trimethylamine-N-oxide reductase precursor (... 28 4.1
3TORA_VIBPA (Q87QI7) Trimethylamine-N-oxide reductase precursor (... 28 7.0
4TORA_SHEON (Q8EHI9) Trimethylamine-N-oxide reductase precursor (... 27 9.2
5TORA_SHEMA (O87948) Trimethylamine-N-oxide reductase precursor (... 27 9.2

>VC04_SWPVK (P32228) Protein C4|
          Length = 530

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
 Frame = -2

Query: 156 IYLCAIYDT-------VYNNSIVVARANCQLFRQQMWF----------EQAMCRIQSR*S 28
           IY+CA YD        +Y  +IV+ + N +L  Q   +          E+ +C I    +
Sbjct: 61  IYICADYDILYIILEFMYTGNIVLTKDNIELVIQVCDYLCIDSLIKICEEYICGIIDETN 120

Query: 27  CSHVSDFSD 1
           C H+ +FSD
Sbjct: 121 CIHLLNFSD 129



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>TORA_VIBCH (Q9KRF0) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)|
           (TMAO reductase) (Trimethylamine oxidase)
          Length = 820

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCGEIAARHDG 355
           WC+  +     H    E+  +   +L AM  QI  GL G G S G H+S  G  +    G
Sbjct: 359 WCIQRQ----EHG---EQPYWMGAVLAAMIGQI--GLPGGGISYGHHYSGIGVPSTGFAG 409

Query: 356 ----VHNLDRGS 379
                 NLD+G+
Sbjct: 410 PGGFPRNLDQGA 421



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>TORA_VIBPA (Q87QI7) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)|
           (TMAO reductase) (Trimethylamine oxidase)
          Length = 820

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCGEIAARHDG 355
           WC+  +     H    E+  +   ++ AM  QI  GL G G S G H+SS G  +    G
Sbjct: 359 WCIQRQ----EHG---EQPYWAAAVVAAMVGQI--GLPGGGISYGHHYSSIGVPSTGFAG 409

Query: 356 ----VHNLDRG 376
                 NLD+G
Sbjct: 410 PGGFPRNLDQG 420



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>TORA_SHEON (Q8EHI9) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)|
           (TMAO reductase) (Trimethylamine oxidase)
          Length = 829

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCG 331
           WC+  +    +H    E+  +   +L  M  QI  GL G G S G H+SS G
Sbjct: 359 WCIQRQ----QHG---EQPYWMAAVLATMIGQI--GLPGGGISYGHHYSSIG 401



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>TORA_SHEMA (O87948) Trimethylamine-N-oxide reductase precursor (EC 1.7.2.3)|
           (TMAO reductase) (Trimethylamine oxidase)
          Length = 829

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 176 WCLNNRLLYNRHNKLFERGVYFHLILPAMSSQIFSGLGGAGESLGQHHSSCG 331
           WC+  +    +H    E+  +   +L  M  QI  GL G G S G H+SS G
Sbjct: 359 WCIQRQ----QHG---EQPYWMAAVLATMIGQI--GLPGGGISYGHHYSSIG 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,281,319
Number of Sequences: 219361
Number of extensions: 925921
Number of successful extensions: 2260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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