ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast39b09 |
|---|---|
| Clone Library Name | barley_pub |
>MDHM_FRAAN (P83373) Malate dehydrogenase, mitochondrial precursor (EC| 1.1.1.37) Length = 339 Score = 32.0 bits (71), Expect = 0.40 Identities = 20/49 (40%), Positives = 22/49 (44%) Frame = -1 Query: 327 ASKVRLGKNGVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKFAQES 181 ASKVRLGKNGVEEV KG+KFA +S Sbjct: 291 ASKVRLGKNGVEEVLDLGPLSDFEKEGLKQLKPELKSSIEKGIKFANQS 339
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 58 GEHDDASMPHGITGLGGNGSGQTKIA*VQGGTIIGWAG 171 G H S+P G+ LG G+G + + GG+++G G Sbjct: 726 GGHGSVSVPGGVGSLGPGGAGGANLNALLGGSLVGHGG 763
>MDHM2_ARATH (Q9LKA3) Malate dehydrogenase 2, mitochondrial precursor (EC| 1.1.1.37) (mNAD-MDH 2) Length = 341 Score = 31.6 bits (70), Expect = 0.52 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = -1 Query: 327 ASKVRLGKNGVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKFAQE 184 ASKVRLGKNGVEEV KG+KFA + Sbjct: 294 ASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341
>MDHM_BRANA (Q43744) Malate dehydrogenase, mitochondrial precursor (EC| 1.1.1.37) Length = 341 Score = 31.2 bits (69), Expect = 0.68 Identities = 20/48 (41%), Positives = 21/48 (43%) Frame = -1 Query: 327 ASKVRLGKNGVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKFAQE 184 ASKVRLGKNGVEEV KGVKFA + Sbjct: 294 ASKVRLGKNGVEEVLDLGPLSDFEKEGLEALRPGIKSTIEKGVKFANQ 341
>MDHM1_ARATH (Q9ZP06) Malate dehydrogenase 1, mitochondrial precursor (EC| 1.1.1.37) (mNAD-MDH 1) Length = 341 Score = 31.2 bits (69), Expect = 0.68 Identities = 20/48 (41%), Positives = 21/48 (43%) Frame = -1 Query: 327 ASKVRLGKNGVEEVXXXXXXXXXXXXXXXXXXXXXXXXXXKGVKFAQE 184 ASKVRLGKNGVEEV KGVKFA + Sbjct: 294 ASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341
>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH| Length = 385 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = -1 Query: 174 ATCPAYNGSPLNSCNFCLTASVAP--QSGYAVGHRGIVVLPNKMYYW 40 A P YNG+P+ N S P Q G A HR + V P + W Sbjct: 120 ARVPTYNGTPITLVNLATHTSALPREQPGGA-AHRPVFVWPTREQRW 165
>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH| Length = 385 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = -1 Query: 174 ATCPAYNGSPLNSCNFCLTASVAP--QSGYAVGHRGIVVLPNKMYYW 40 A P YNG+P+ N S P Q G A HR + V P + W Sbjct: 120 ARVPTYNGTPITLVNLATHTSALPREQPGGA-AHRPVFVWPTREQRW 165
>MDHM_EUCGU (P46487) Malate dehydrogenase, mitochondrial precursor (EC| 1.1.1.37) Length = 347 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = -1 Query: 327 ASKVRLGKNGVEEV 286 ASKV+LGKNGVEEV Sbjct: 300 ASKVKLGKNGVEEV 313
>MDHG_CITLA (P19446) Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37)| Length = 356 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -1 Query: 327 ASKVRLGKNGVEEV 286 ASKVRLG+NG+EEV Sbjct: 309 ASKVRLGRNGIEEV 322
>PHF10_MOUSE (Q9D8M7) PHD finger protein 10| Length = 410 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +3 Query: 102 GGQRKRSNKNCMSSRGNHYRLGRSPPSSPAQT*H 203 GG KR NK S + G SPP S T H Sbjct: 220 GGDEKRKNKGTSDSSSGNVSEGDSPPDSQEDTFH 253
>BRSK2_HUMAN (Q8IWQ3) BR serine/threonine-protein kinase 2 (EC 2.7.11.1)| (Serine/threonine-protein kinase 29) (SAD1B) Length = 736 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = +3 Query: 63 ARRCLDAPRHNRIGGQRKRSNKNCMSSRGNHYRLGRSPPSSPAQT*HPS 209 ARR ++ +H GQR RS S L SP SSP T HPS Sbjct: 397 ARRAIEMAQH----GQRSRSISGASSG------LSTSPLSSPRVTPHPS 435
>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)| Length = 1432 Score = 27.3 bits (59), Expect = 9.8 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = -2 Query: 314 GWARTEWRKCLGWASYRPWRRRG 246 GW + R C ++RPW R G Sbjct: 27 GWKERQHRPCAATGAWRPWPRAG 49
>ACVS_STRCL (Q01757) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine| synthase (EC 6.3.2.26) (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase) (ACV synthetase) (ACVS) (Fragment) Length = 805 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 18 VQSGDIKASSTFYWGARRCLDAPRHNRIGG 107 V+ G+I+A +T Y G R+C+ R GG Sbjct: 688 VEPGEIEAQATEYAGVRKCVVIAREGAGGG 717
>Y2353_MYCBO (P63400) Hypothetical ABC transporter ATP-binding protein Mb2353c| Length = 697 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 46 VHFIGEHDDASMPHGITGLGGNGSGQTKIA*VQGGTIIGWAG 171 ++F+ E D + HG GNGSG++ +A + G I G Sbjct: 500 INFVVEQGDGVLIHG-----GNGSGKSTLAWIMAGLTIPTTG 536
>Y2326_MYCTU (P63399) Hypothetical ABC transporter ATP-binding protein| Rv2326c/MT2388 Length = 697 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 46 VHFIGEHDDASMPHGITGLGGNGSGQTKIA*VQGGTIIGWAG 171 ++F+ E D + HG GNGSG++ +A + G I G Sbjct: 500 INFVVEQGDGVLIHG-----GNGSGKSTLAWIMAGLTIPTTG 536
>MDHM_CITLA (P17783) Malate dehydrogenase, mitochondrial precursor (EC| 1.1.1.37) Length = 347 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -1 Query: 327 ASKVRLGKNGVEEV 286 ASKV+LGKNGVE V Sbjct: 299 ASKVKLGKNGVESV 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,394,258 Number of Sequences: 219361 Number of extensions: 734445 Number of successful extensions: 2347 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2346 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
