>ACPA_BACAN (Q44643) Capsule synthesis positive regulator acpA|
          Length = 483

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 237 LLNMIVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDL 350
           LLN+++  +R+FTL++L+++L+  S T      + +DL
Sbjct: 11  LLNILIEEKRWFTLFELEKNLNCSSKTIRKDISIINDL 48

>MURE_NEIMA (Q9JSZ0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 492

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -2

Query: 358 WSERSCRTRLVAAAVLEPIERC----CCNLYNVKNLLD 257
           W E  CRTRL+     + +  C    C N Y + N+LD
Sbjct: 291 WGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

>ZN553_MOUSE (Q3US17) Zinc finger protein 553|
          Length = 591

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 RLQHRRCHQAGTTRPL*PPARLLQAQCP 388
           R++H R HQ   TRP  PP+ LL+   P
Sbjct: 466 RVKHLRTHQGERTRPPPPPSTLLRPHNP 493

>UPPP_TROWT (Q83GH4) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 180 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 287
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48

>UPPP_TROW8 (Q83HQ7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 180 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 287
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48

>SRD41_CAEEL (O17821) Serpentine receptor class delta-41 (Protein srd-41)|
          Length = 324

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -2

Query: 316 VLEPIERCCCNLYNVKNLLDGTIIFNKGIIMITWASPCPVCPIGKKLSWKKKGRSYCILP 137
           +LE I++    +   KN  +   +F KG+I+ T+   C  CPI            YCI+ 
Sbjct: 214 LLEHIQKTSDRVSQTKNSQNK--MFVKGVILQTFLPLCFYCPISSIY-------FYCIVT 264

Query: 136 H----IQYFLIFNCLIFWLIISPY 77
           H     Q + +F    F  +  PY
Sbjct: 265 HEEILFQQYFMFLIPAFPALFDPY 288

>ORAI1_BRARE (Q6TLE6) Protein orai-1|
          Length = 222

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 256 GTIIFNKGIIMITWASPCPVCPIGKK 179
           GT++F  G++++ W    P+ P G+K
Sbjct: 122 GTLLFLAGVVLLCWVKFLPIKPKGQK 147

>LDH_CLOPE (Q8XP62) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)|
          Length = 317

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 303 IGSNTAAATKRVRHDLSDHRRDFYKRNVHT 392
           IGS T   T R+++ LS+H  D   RNVHT
Sbjct: 144 IGSGTVLDTSRLKYMLSEH-FDIDARNVHT 172

>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
            polymerase II termination factor) (Transcription release
            factor 2)
          Length = 1184

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -2

Query: 304  IERCCCNLYNVKNLLDGTIIFNKGIIM 224
            + +CCC+L  +K+ LD T + ++G+++
Sbjct: 945  LRQCCCHLSLLKSALDPTELESEGLVL 971

>COBS_SULSO (Q97TZ6) Cobalamin synthase (EC 2.-.-.-)|
          Length = 253

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = -2

Query: 286 NLYNVKNLLDGTII-FNKGIIMITWASPCPVCPIGKKLSWKKKGRSYCIL----PHIQYF 122
           +LY +  L+   ++  +  + +++  SP P   +G+    K KG+S  +L    P I  +
Sbjct: 131 SLYTIFYLISSNVLSMSLSLYILSTISPIPESNLGRIFHDKLKGKSTILLLELIPFISLY 190

Query: 121 LIFNCLIFWLII 86
            +   +IF++I+
Sbjct: 191 NVIVFIIFYMIM 202

>NIFA_ENTAG (P54930) Nif-specific regulatory protein|
          Length = 518

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 234 PLLNMIVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDLSDH 359
           P++     S +F  LY++   LS  SNTA A   +   L DH
Sbjct: 9   PVIRRFDMSAQFTALYRISVALSQESNTARALAAILEVLHDH 50

>ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 (EC 3.6.3.1)|
           (Aminophospholipid flippase 2)
          Length = 1107

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 130 QYFLIFNCLIFWLIISPYSAVET 62
           QYFL+  CL  W +I+P +   T
Sbjct: 47  QYFLLIACLQLWSLITPVNPAST 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,271,108
Number of Sequences: 219361
Number of extensions: 1176737
Number of successful extensions: 3019
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3016
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)