ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast38h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_587049.2| PREDICTED: Bos taurus similar to G-protein coup... 44 0.24
2gb|BT025407.1| Bos taurus G protein-coupled receptor 114 (GPR114... 44 0.24
3gb|AC162917.3| Mus musculus BAC clone RP23-379N7 from chromosome... 44 0.24
4gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, comple... 44 0.24
5gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complet... 42 0.96
6gb|DQ083175.1| Oryza sativa (indica cultivar-group) clone 1S3A41... 42 0.96
7gb|AF361796.1|AF361796 Homo sapiens serine/cysteine proteinase i... 42 0.96
8emb|AL132990.4|CNS01DTY Human chromosome 14 DNA sequence BAC R-2... 42 0.96
9emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-9... 42 0.96
10gb|M68516.1|HUMPCI Human protein C inhibitor gene, complete cds 42 0.96
11gb|AC116722.7| Mus musculus chromosome 3, clone RP23-257M16, com... 40 3.8
12gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 3.8
13gb|BT019303.1| Zea mays clone Contig976.F mRNA sequence 40 3.8
14gb|BT018425.1| Zea mays clone EL01N0362C11.d mRNA sequence 40 3.8
15gb|AC161484.4| Mus musculus chromosome 5, clone RP23-6C10, compl... 40 3.8
16ref|XM_979523.1| PREDICTED: Mus musculus F-box and leucine-rich ... 40 3.8
17gb|AC115734.9| Mus musculus, clone RP23-466K3, complete sequence 40 3.8
18emb|BX510321.9| Zebrafish DNA sequence from clone CH211-255P13 i... 40 3.8
19dbj|AK029566.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.8
20dbj|AK030172.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.8
21ref|NM_177076.2| Mus musculus F-box and leucine-rich repeat prot... 40 3.8
22gb|AY103615.1| Zea mays PCO148672 mRNA sequence 40 3.8

>ref|XM_587049.2| PREDICTED: Bos taurus similar to G-protein coupled receptor 114
           (LOC509974), mRNA
          Length = 2754

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 158 tggaaggagagagccagcaagc 179
           ||||||||||||||||||||||
Sbjct: 779 tggaaggagagagccagcaagc 800



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>gb|BT025407.1| Bos taurus G protein-coupled receptor 114 (GPR114), mRNA,
           incomplete 3' cds
          Length = 1013

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 158 tggaaggagagagccagcaagc 179
           ||||||||||||||||||||||
Sbjct: 761 tggaaggagagagccagcaagc 782



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>gb|AC162917.3| Mus musculus BAC clone RP23-379N7 from chromosome 9, complete sequence
          Length = 189606

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 167    agagccagcaagctggcatttt 188
              ||||||||||||||||||||||
Sbjct: 157679 agagccagcaagctggcatttt 157658



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>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence
          Length = 182075

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 167    agagccagcaagctggcatttt 188
              ||||||||||||||||||||||
Sbjct: 131400 agagccagcaagctggcatttt 131421



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>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence
          Length = 164511

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 145    tttcatttccaaatggaagga 165
              |||||||||||||||||||||
Sbjct: 107204 tttcatttccaaatggaagga 107224



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>gb|DQ083175.1| Oryza sativa (indica cultivar-group) clone 1S3A41 mRNA sequence
          Length = 430

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                    
Query: 77  cctcagttacacaatga-cagccaggcgcgcctagaataca 116
           ||||||||||||||  | |||||||| ||||||||||||||
Sbjct: 414 cctcagttacacaaatagcagccaggagcgcctagaataca 374



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>gb|AF361796.1|AF361796 Homo sapiens serine/cysteine proteinase inhibitor clade A member 5
            (SERPINA5) gene, complete cds
          Length = 8145

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 114  acagagaagctcacccagataactggtagcatt 146
            ||||||||| ||||||||||| | |||||||||
Sbjct: 3786 acagagaagttcacccagatatcaggtagcatt 3818



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>emb|AL132990.4|CNS01DTY Human chromosome 14 DNA sequence BAC R-262P9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181004

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 114    acagagaagctcacccagataactggtagcatt 146
              ||||||||| ||||||||||| | |||||||||
Sbjct: 178817 acagagaagttcacccagatatcaggtagcatt 178849



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>emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-986E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 214527

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 114   acagagaagctcacccagataactggtagcatt 146
             ||||||||| ||||||||||| | |||||||||
Sbjct: 34765 acagagaagttcacccagatatcaggtagcatt 34797



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>gb|M68516.1|HUMPCI Human protein C inhibitor gene, complete cds
          Length = 15571

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 114   acagagaagctcacccagataactggtagcatt 146
             ||||||||| ||||||||||| | |||||||||
Sbjct: 10248 acagagaagttcacccagatatcaggtagcatt 10280



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>gb|AC116722.7| Mus musculus chromosome 3, clone RP23-257M16, complete sequence
          Length = 207409

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aatggaaggagagagccagc 175
             ||||||||||||||||||||
Sbjct: 45977 aatggaaggagagagccagc 45996



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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     tgagggcgttgcccttctcc 291
               ||||||||||||||||||||
Sbjct: 1697524 tgagggcgttgcccttctcc 1697543



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>gb|BT019303.1| Zea mays clone Contig976.F mRNA sequence
          Length = 1639

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 agagagccagcaagctggcatttt 188
           |||||||||||||||| |||||||
Sbjct: 177 agagagccagcaagctagcatttt 200



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 85  acacaatgacagccaggcgcgcctagaataca 116
           |||||||||| |||||||  ||||||||||||
Sbjct: 100 acacaatgacggccaggcaagcctagaataca 131



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>gb|BT018425.1| Zea mays clone EL01N0362C11.d mRNA sequence
          Length = 1479

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 165  agagagccagcaagctggcatttt 188
            |||||||||||||||| |||||||
Sbjct: 1416 agagagccagcaagctagcatttt 1393



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 268  gtcttgagggcgttgcccttctcc 291
            |||||||||| |||||||||||||
Sbjct: 1335 gtcttgagggtgttgcccttctcc 1312



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>gb|AC161484.4| Mus musculus chromosome 5, clone RP23-6C10, complete sequence
          Length = 249620

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aaatggaaggagagagccag 174
             ||||||||||||||||||||
Sbjct: 56534 aaatggaaggagagagccag 56553



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>ref|XM_979523.1| PREDICTED: Mus musculus F-box and leucine-rich repeat protein 13
           (Fbxl13), mRNA
          Length = 2305

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 aaatggaaggagagagccag 174
           ||||||||||||||||||||
Sbjct: 298 aaatggaaggagagagccag 317



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>gb|AC115734.9| Mus musculus, clone RP23-466K3, complete sequence
          Length = 185209

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    aatggaaggagagagccagc 175
              ||||||||||||||||||||
Sbjct: 179872 aatggaaggagagagccagc 179891



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>emb|BX510321.9| Zebrafish DNA sequence from clone CH211-255P13 in linkage group 2,
              complete sequence
          Length = 160542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      caaagatacacaaatatgtc 22
              ||||||||||||||||||||
Sbjct: 147305 caaagatacacaaatatgtc 147286



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>dbj|AK029566.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921539K22 product:hypothetical F-box
           domain containing protein, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 aaatggaaggagagagccag 174
           ||||||||||||||||||||
Sbjct: 624 aaatggaaggagagagccag 643



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>dbj|AK030172.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933409A11 product:hypothetical F-box
           domain containing protein, full insert sequence
          Length = 2345

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 aaatggaaggagagagccag 174
           ||||||||||||||||||||
Sbjct: 605 aaatggaaggagagagccag 624



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>ref|NM_177076.2| Mus musculus F-box and leucine-rich repeat protein 13 (Fbxl13),
           mRNA
          Length = 2533

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 aaatggaaggagagagccag 174
           ||||||||||||||||||||
Sbjct: 624 aaatggaaggagagagccag 643



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>gb|AY103615.1| Zea mays PCO148672 mRNA sequence
          Length = 1731

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 85   acacaatgacagccaggcgcgcctagaataca 116
            |||||||||| |||||||  ||||||||||||
Sbjct: 1614 acacaatgacggccaggcaagcctagaataca 1583



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 165  agagagccagcaagctggcatttt 188
            |||||||||||||||| |||||||
Sbjct: 1537 agagagccagcaagctagcatttt 1514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,725,387
Number of Sequences: 3902068
Number of extensions: 2725387
Number of successful extensions: 51008
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50969
Number of HSP's gapped (non-prelim): 39
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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