| Clone Name | rbast38h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_587049.2| PREDICTED: Bos taurus similar to G-protein coupled receptor 114 (LOC509974), mRNA Length = 2754 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 tggaaggagagagccagcaagc 179 |||||||||||||||||||||| Sbjct: 779 tggaaggagagagccagcaagc 800
>gb|BT025407.1| Bos taurus G protein-coupled receptor 114 (GPR114), mRNA, incomplete 3' cds Length = 1013 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 tggaaggagagagccagcaagc 179 |||||||||||||||||||||| Sbjct: 761 tggaaggagagagccagcaagc 782
>gb|AC162917.3| Mus musculus BAC clone RP23-379N7 from chromosome 9, complete sequence Length = 189606 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 agagccagcaagctggcatttt 188 |||||||||||||||||||||| Sbjct: 157679 agagccagcaagctggcatttt 157658
>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence Length = 182075 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 agagccagcaagctggcatttt 188 |||||||||||||||||||||| Sbjct: 131400 agagccagcaagctggcatttt 131421
>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence Length = 164511 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 tttcatttccaaatggaagga 165 ||||||||||||||||||||| Sbjct: 107204 tttcatttccaaatggaagga 107224
>gb|DQ083175.1| Oryza sativa (indica cultivar-group) clone 1S3A41 mRNA sequence Length = 430 Score = 42.1 bits (21), Expect = 0.96 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 77 cctcagttacacaatga-cagccaggcgcgcctagaataca 116 |||||||||||||| | |||||||| |||||||||||||| Sbjct: 414 cctcagttacacaaatagcagccaggagcgcctagaataca 374
>gb|AF361796.1|AF361796 Homo sapiens serine/cysteine proteinase inhibitor clade A member 5 (SERPINA5) gene, complete cds Length = 8145 Score = 42.1 bits (21), Expect = 0.96 Identities = 30/33 (90%) Strand = Plus / Plus Query: 114 acagagaagctcacccagataactggtagcatt 146 ||||||||| ||||||||||| | ||||||||| Sbjct: 3786 acagagaagttcacccagatatcaggtagcatt 3818
>emb|AL132990.4|CNS01DTY Human chromosome 14 DNA sequence BAC R-262P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181004 Score = 42.1 bits (21), Expect = 0.96 Identities = 30/33 (90%) Strand = Plus / Plus Query: 114 acagagaagctcacccagataactggtagcatt 146 ||||||||| ||||||||||| | ||||||||| Sbjct: 178817 acagagaagttcacccagatatcaggtagcatt 178849
>emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-986E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214527 Score = 42.1 bits (21), Expect = 0.96 Identities = 30/33 (90%) Strand = Plus / Plus Query: 114 acagagaagctcacccagataactggtagcatt 146 ||||||||| ||||||||||| | ||||||||| Sbjct: 34765 acagagaagttcacccagatatcaggtagcatt 34797
>gb|M68516.1|HUMPCI Human protein C inhibitor gene, complete cds Length = 15571 Score = 42.1 bits (21), Expect = 0.96 Identities = 30/33 (90%) Strand = Plus / Plus Query: 114 acagagaagctcacccagataactggtagcatt 146 ||||||||| ||||||||||| | ||||||||| Sbjct: 10248 acagagaagttcacccagatatcaggtagcatt 10280
>gb|AC116722.7| Mus musculus chromosome 3, clone RP23-257M16, complete sequence Length = 207409 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 aatggaaggagagagccagc 175 |||||||||||||||||||| Sbjct: 45977 aatggaaggagagagccagc 45996
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tgagggcgttgcccttctcc 291 |||||||||||||||||||| Sbjct: 1697524 tgagggcgttgcccttctcc 1697543
>gb|BT019303.1| Zea mays clone Contig976.F mRNA sequence Length = 1639 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 agagagccagcaagctggcatttt 188 |||||||||||||||| ||||||| Sbjct: 177 agagagccagcaagctagcatttt 200 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 85 acacaatgacagccaggcgcgcctagaataca 116 |||||||||| ||||||| |||||||||||| Sbjct: 100 acacaatgacggccaggcaagcctagaataca 131
>gb|BT018425.1| Zea mays clone EL01N0362C11.d mRNA sequence Length = 1479 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 agagagccagcaagctggcatttt 188 |||||||||||||||| ||||||| Sbjct: 1416 agagagccagcaagctagcatttt 1393 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 gtcttgagggcgttgcccttctcc 291 |||||||||| ||||||||||||| Sbjct: 1335 gtcttgagggtgttgcccttctcc 1312
>gb|AC161484.4| Mus musculus chromosome 5, clone RP23-6C10, complete sequence Length = 249620 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaatggaaggagagagccag 174 |||||||||||||||||||| Sbjct: 56534 aaatggaaggagagagccag 56553
>ref|XM_979523.1| PREDICTED: Mus musculus F-box and leucine-rich repeat protein 13 (Fbxl13), mRNA Length = 2305 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaatggaaggagagagccag 174 |||||||||||||||||||| Sbjct: 298 aaatggaaggagagagccag 317
>gb|AC115734.9| Mus musculus, clone RP23-466K3, complete sequence Length = 185209 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 aatggaaggagagagccagc 175 |||||||||||||||||||| Sbjct: 179872 aatggaaggagagagccagc 179891
>emb|BX510321.9| Zebrafish DNA sequence from clone CH211-255P13 in linkage group 2, complete sequence Length = 160542 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 caaagatacacaaatatgtc 22 |||||||||||||||||||| Sbjct: 147305 caaagatacacaaatatgtc 147286
>dbj|AK029566.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921539K22 product:hypothetical F-box domain containing protein, full insert sequence Length = 2533 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaatggaaggagagagccag 174 |||||||||||||||||||| Sbjct: 624 aaatggaaggagagagccag 643
>dbj|AK030172.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933409A11 product:hypothetical F-box domain containing protein, full insert sequence Length = 2345 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaatggaaggagagagccag 174 |||||||||||||||||||| Sbjct: 605 aaatggaaggagagagccag 624
>ref|NM_177076.2| Mus musculus F-box and leucine-rich repeat protein 13 (Fbxl13), mRNA Length = 2533 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaatggaaggagagagccag 174 |||||||||||||||||||| Sbjct: 624 aaatggaaggagagagccag 643
>gb|AY103615.1| Zea mays PCO148672 mRNA sequence Length = 1731 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 85 acacaatgacagccaggcgcgcctagaataca 116 |||||||||| ||||||| |||||||||||| Sbjct: 1614 acacaatgacggccaggcaagcctagaataca 1583 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 agagagccagcaagctggcatttt 188 |||||||||||||||| ||||||| Sbjct: 1537 agagagccagcaagctagcatttt 1514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,725,387 Number of Sequences: 3902068 Number of extensions: 2725387 Number of successful extensions: 51008 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 50969 Number of HSP's gapped (non-prelim): 39 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)