ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast38f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 28 5.7
2UQCR2_CANGA (Q6FSJ3) Ubiquinol-cytochrome-c reductase complex co... 27 9.7

>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 269

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 226 TSNARLVIAAPD*FSLCDRRPSWTDATQCRMMGDG 330
           T+N  L     + F LC R P WT+   C + G G
Sbjct: 120 TANTALRYLVREAFDLCTRDPEWTEGA-CALSGSG 153



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>UQCR2_CANGA (Q6FSJ3) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 364

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 70  YQCTNMNQSVQLIRLSDISHSCSVSHTAKEYIFL 171
           +Q TN   +++L+R S++   C+ S   +EYI L
Sbjct: 54  FQNTNTKSALRLVRESELLGGCTKSTVDREYITL 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,687,354
Number of Sequences: 219361
Number of extensions: 920473
Number of successful extensions: 1974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1974
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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