| Clone Name | rbast38e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1612 Score = 115 bits (58), Expect = 4e-23 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand = Plus / Minus Query: 29 cctcagtacaggggatggcaaaacctgcgctctaacagccttgctgtcctaaaacttatt 88 |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482 Query: 89 atg--tcaagcatcaaactttcccggggg 115 ||| |||||||||||||||||||||||| Sbjct: 1481 atgtatcaagcatcaaactttcccggggg 1453
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 4e-23 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand = Plus / Plus Query: 29 cctcagtacaggggatggcaaaacctgcgctctaacagccttgctgtcctaaaacttatt 88 |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct: 32337951 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 32338010 Query: 89 atg--tcaagcatcaaactttcccggggg 115 ||| |||||||||||||||||||||||| Sbjct: 32338011 atgtatcaagcatcaaactttcccggggg 32338039 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 cttgctgtcctaaaactta 86 ||||||||||||||||||| Sbjct: 23953541 cttgctgtcctaaaactta 23953523 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 cttgctgtcctaaaactta 86 ||||||||||||||||||| Sbjct: 23940078 cttgctgtcctaaaactta 23940060
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 115 bits (58), Expect = 4e-23 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand = Plus / Plus Query: 29 cctcagtacaggggatggcaaaacctgcgctctaacagccttgctgtcctaaaacttatt 88 |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct: 113783 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 113842 Query: 89 atg--tcaagcatcaaactttcccggggg 115 ||| |||||||||||||||||||||||| Sbjct: 113843 atgtatcaagcatcaaactttcccggggg 113871
>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full insert sequence Length = 1612 Score = 115 bits (58), Expect = 4e-23 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand = Plus / Minus Query: 29 cctcagtacaggggatggcaaaacctgcgctctaacagccttgctgtcctaaaacttatt 88 |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482 Query: 89 atg--tcaagcatcaaactttcccggggg 115 ||| |||||||||||||||||||||||| Sbjct: 1481 atgtatcaagcatcaaactttcccggggg 1453
>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial phosphate transporter, complete cds Length = 1552 Score = 115 bits (58), Expect = 4e-23 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand = Plus / Minus Query: 29 cctcagtacaggggatggcaaaacctgcgctctaacagccttgctgtcctaaaacttatt 88 |||||||||||| |||| ||||||||| ||||||||||||||||||||| |||| ||||| Sbjct: 1506 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1447 Query: 89 atg--tcaagcatcaaactttcccggggg 115 ||| |||||||||||||||||||||||| Sbjct: 1446 atgtatcaagcatcaaactttcccggggg 1418
>gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence Length = 958 Score = 58.0 bits (29), Expect = 8e-06 Identities = 32/33 (96%) Strand = Plus / Minus Query: 128 cctatttcgcctgcttaatgagttcctctcatc 160 ||||||||||||| ||||||||||||||||||| Sbjct: 825 cctatttcgcctgtttaatgagttcctctcatc 793
>gb|AY104226.1| Zea mays PCO060710 mRNA sequence Length = 1639 Score = 58.0 bits (29), Expect = 8e-06 Identities = 32/33 (96%) Strand = Plus / Minus Query: 128 cctatttcgcctgcttaatgagttcctctcatc 160 ||||||||||||| ||||||||||||||||||| Sbjct: 1394 cctatttcgcctgtttaatgagttcctctcatc 1362 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 47 caaaacctgcgctctaacagccttgctgtcctaaaacttattatg 91 ||||||||||||||||| ||| |||| |||||| || |||||||| Sbjct: 1473 caaaacctgcgctctaagagcgttgccgtcctacaaattattatg 1429
>dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transporter, complete cds Length = 1444 Score = 58.0 bits (29), Expect = 8e-06 Identities = 32/33 (96%) Strand = Plus / Minus Query: 128 cctatttcgcctgcttaatgagttcctctcatc 160 ||||||||||||| ||||||||||||||||||| Sbjct: 1300 cctatttcgcctgtttaatgagttcctctcatc 1268
>dbj|AP001295.1| Mus musculus genomic DNA, chromosome 7, clone:B96, complete sequence Length = 191373 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 67 ccttgctgtcctaaaacttattatgt 92 ||||||||||||||||||| |||||| Sbjct: 168528 ccttgctgtcctaaaacttgttatgt 168503
>gb|AC012540.12| Mus musculus chromosome 7, clone RP23-101N20, complete sequence Length = 211091 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 67 ccttgctgtcctaaaacttattatgt 92 ||||||||||||||||||| |||||| Sbjct: 124823 ccttgctgtcctaaaacttgttatgt 124848
>gb|AC140448.3| Mus musculus BAC clone RP23-54G12 from chromosome 9, complete sequence Length = 213580 Score = 42.1 bits (21), Expect = 0.50 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 agccttgctgtcctaaaactt 85 ||||||||||||||||||||| Sbjct: 129176 agccttgctgtcctaaaactt 129196
>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence Length = 130895 Score = 42.1 bits (21), Expect = 0.50 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 gctgtcctaaaacttattatgtcaa 95 ||||||||| ||||||||||||||| Sbjct: 91948 gctgtcctagaacttattatgtcaa 91972
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tgtcctaaaacttattatgt 92 |||||||||||||||||||| Sbjct: 156403 tgtcctaaaacttattatgt 156384
>gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosome 16, complete sequence Length = 150449 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ccttgctgtcctaaaacttattat 90 |||||||| ||||||||||||||| Sbjct: 60257 ccttgctgacctaaaacttattat 60280
>gb|AC099540.2| Homo sapiens chromosome 3 clone RP11-353D4, complete sequence Length = 167799 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gaatccctcagtacagggga 43 |||||||||||||||||||| Sbjct: 134341 gaatccctcagtacagggga 134360
>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 187947 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gaaacaagattatatgggaa 26 |||||||||||||||||||| Sbjct: 125167 gaaacaagattatatgggaa 125186
>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197817 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gaaacaagattatatgggaa 26 |||||||||||||||||||| Sbjct: 181720 gaaacaagattatatgggaa 181739
>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204618 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tgtcctaaaacttattatgt 92 |||||||||||||||||||| Sbjct: 197720 tgtcctaaaacttattatgt 197739
>gb|AC154908.4| Mus musculus BAC clone RP23-315C11 from chromosome 12, complete sequence Length = 169650 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 atgtcaagcatcaaacttt 107 ||||||||||||||||||| Sbjct: 24320 atgtcaagcatcaaacttt 24338
>gb|AC102540.7| Mus musculus chromosome 3, clone RP23-98H24, complete sequence Length = 207497 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 aatccctcagtacagggga 43 ||||||||||||||||||| Sbjct: 1126 aatccctcagtacagggga 1108
>gb|AC110896.8| Mus musculus chromosome 3, clone RP24-127P11, complete sequence Length = 151699 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 142 ttaatgagttcctctcatc 160 ||||||||||||||||||| Sbjct: 88268 ttaatgagttcctctcatc 88250
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 aacagccttgctgtcctaaaact 84 |||||||||||| |||||||||| Sbjct: 70030 aacagccttgctttcctaaaact 70008
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 62 aacagccttgctgtcctaaaact 84 |||||||||||| |||||||||| Sbjct: 2403 aacagccttgctttcctaaaact 2425
>gb|AC157814.10| Mus musculus chromosome 3, clone RP24-134L24, complete sequence Length = 150033 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 aatccctcagtacagggga 43 ||||||||||||||||||| Sbjct: 87597 aatccctcagtacagggga 87615
>gb|AC124436.5| Mus musculus BAC clone RP24-252O24 from chromosome 10, complete sequence Length = 174497 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gctctaacagccttgctgt 75 ||||||||||||||||||| Sbjct: 55035 gctctaacagccttgctgt 55017
>gb|AC132391.3| Mus musculus BAC clone RP23-454N21 from chromosome 12, complete sequence Length = 178291 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 atgtcaagcatcaaacttt 107 ||||||||||||||||||| Sbjct: 24708 atgtcaagcatcaaacttt 24690
>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence Length = 194400 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 70 tgctgtcctaaaacttattatgt 92 |||| |||||||||||||||||| Sbjct: 89494 tgctatcctaaaacttattatgt 89472
>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11, complete sequence Length = 230487 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 tcaagcatcaaactttccc 110 ||||||||||||||||||| Sbjct: 36684 tcaagcatcaaactttccc 36666
>gb|AC074033.18| Homo sapiens 3 BAC RP11-641D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127945 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gccttgctgtcctaaaact 84 ||||||||||||||||||| Sbjct: 80335 gccttgctgtcctaaaact 80317
>dbj|AK082512.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230058F08 product:unclassifiable, full insert sequence Length = 2572 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 atgtcaagcatcaaacttt 107 ||||||||||||||||||| Sbjct: 574 atgtcaagcatcaaacttt 556
>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08 Length = 163423 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 cttgctgtcctaaaactta 86 ||||||||||||||||||| Sbjct: 161744 cttgctgtcctaaaactta 161726
>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0496E03 Length = 138622 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 cttgctgtcctaaaactta 86 ||||||||||||||||||| Sbjct: 87505 cttgctgtcctaaaactta 87487 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 cttgctgtcctaaaactta 86 ||||||||||||||||||| Sbjct: 74042 cttgctgtcctaaaactta 74024
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 62 aacagccttgctgtcctaaaact 84 |||||||||||| |||||||||| Sbjct: 260491 aacagccttgctttcctaaaact 260513
>emb|AL929540.9| Mouse DNA sequence from clone RP23-132M12 on chromosome X, complete sequence Length = 145087 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 atccctcagtacaggggat 44 ||||||||||||||||||| Sbjct: 141464 atccctcagtacaggggat 141446
>gb|AC131122.4| Mus musculus BAC clone RP24-553B2 from 3, complete sequence Length = 183750 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 tgctgtcctaaaacttattatgt 92 |||| |||||||||||||||||| Sbjct: 78719 tgctatcctaaaacttattatgt 78741
>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence Length = 207157 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 gctctaacagccttgctgt 75 ||||||||||||||||||| Sbjct: 49007 gctctaacagccttgctgt 49025 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,243,712 Number of Sequences: 3902068 Number of extensions: 1243712 Number of successful extensions: 88701 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88570 Number of HSP's gapped (non-prelim): 126 length of query: 162 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 140 effective length of database: 17,147,199,772 effective search space: 2400607968080 effective search space used: 2400607968080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)