ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast38d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507518.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
2ref|XM_467111.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
3ref|XM_507517.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
4ref|XM_506891.2| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
5gb|AY363174.1| Oryza sativa (japonica cultivar-group) 3-isopropy... 88 2e-14
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
7dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
8dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
9dbj|AK120006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
10dbj|AK106107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
11dbj|AK103778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
12dbj|AK061544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
13emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 88 2e-14
14gb|AY109732.1| Zea mays CL1042_1 mRNA sequence 70 6e-09
15gb|BT016386.1| Zea mays clone Contig219 mRNA sequence 62 1e-06
16gb|BT009140.1| Triticum aestivum clone wl1n.pk0048.a6:fis, full ... 62 1e-06
17gb|BT014469.1| Lycopersicon esculentum clone 133817F, mRNA sequence 40 5.2
18dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.2
19gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 5.2 
>ref|XM_507518.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1311

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttg 717
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>ref|XM_467111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1081

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttg 708
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>ref|XM_507517.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1092

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttg 686
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>ref|XM_506891.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26
           mRNA
          Length = 1141

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttg 720
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>gb|AY363174.1| Oryza sativa (japonica cultivar-group) 3-isopropylmalate
           dehydratase small subunit (IPMDHSU) mRNA, complete cds
          Length = 1063

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 792 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 733

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 732 ctcaataaccggcccggcatcgccgataggcttcagcttg 693
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                            
Query: 289      tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
                ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 26486955 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 26487014

                                                        
Query: 349      ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
                || ||||||||| || ||||| || |||||||||||||||
Sbjct: 26487015 ctcaataaccggcccggcatcgccgataggcttcagcttg 26487054
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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_B06
          Length = 131956

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                         
Query: 289   tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
             ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 86871 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 86930

                                                     
Query: 349   ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
             || ||||||||| || ||||| || |||||||||||||||
Sbjct: 86931 ctcaataaccggcccggcatcgccgataggcttcagcttg 86970
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                         
Query: 289   tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
             ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 29336 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 29395

                                                     
Query: 349   ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
             || ||||||||| || ||||| || |||||||||||||||
Sbjct: 29396 ctcaataaccggcccggcatcgccgataggcttcagcttg 29435
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>dbj|AK120006.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A03, full
           insert sequence
          Length = 1311

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttg 717
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>dbj|AK106107.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D01, full
           insert sequence
          Length = 1141

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttg 720
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>dbj|AK103778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145B21, full
           insert sequence
          Length = 1092

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttg 686
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>dbj|AK061544.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A03, full
           insert sequence
          Length = 1081

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 289 tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
           ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748

                                                   
Query: 349 ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
           || ||||||||| || ||||| || |||||||||||||||
Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttg 708
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                          
Query: 289    tcacgcaaatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 348
              ||||||| | ||||| ||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct: 192640 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 192699

                                                      
Query: 349    ctaaataaccgggcctgcatcaccaataggcttcagcttg 388
              || ||||||||| || ||||| || |||||||||||||||
Sbjct: 192700 ctcaataaccggcccggcatcgccgataggcttcagcttg 192739
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>gb|AY109732.1| Zea mays CL1042_1 mRNA sequence
          Length = 1085

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                       
Query: 302 gacgcgatcattccagtcttccgagcataagcgaagatccccccggcctaaataaccggg 361
           ||||| |||||||| |||||||| || || || |||||||| ||||||| ||| || |||
Sbjct: 744 gacgcaatcattcctgtcttccgggcgtaggcaaagatccctccggcctcaattacaggg 685

                                      
Query: 362 cctgcatcaccaataggcttcagcttg 388
           || ||||||||||| || |||||||||
Sbjct: 684 ccagcatcaccaattggtttcagcttg 658
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>gb|BT016386.1| Zea mays clone Contig219 mRNA sequence
          Length = 1075

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                       
Query: 302 gacgcgatcattccagtcttccgagcataagcgaagatccccccggcctaaataaccggg 361
           ||||| |||||||| |||||||| || || || |||||||| || |||| ||| || |||
Sbjct: 782 gacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctcaattacaggg 723

                                      
Query: 362 cctgcatcaccaataggcttcagcttg 388
           || ||||||||||| || |||||||||
Sbjct: 722 ccagcatcaccaattggtttcagcttg 696
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>gb|BT009140.1| Triticum aestivum clone wl1n.pk0048.a6:fis, full insert mRNA
           sequence
          Length = 1005

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                       
Query: 302 gacgcgatcattccagtcttccgagcataagcgaagatccccccggcctaaataaccggg 361
           ||||| |||||||| |||||||| || || || |||||||| || |||| ||| || |||
Sbjct: 719 gacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctcaattacaggg 660

                                      
Query: 362 cctgcatcaccaataggcttcagcttg 388
           || ||||||||||| || |||||||||
Sbjct: 659 ccagcatcaccaattggtttcagcttg 633
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>gb|BT014469.1| Lycopersicon esculentum clone 133817F, mRNA sequence
          Length = 1346

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                       
Query: 308 atcattccagtcttccgagcataagcgaagatccccccggcctaaataaccgggcctgca 367
           |||||||||| ||| |  ||||||||||| || || || || | ||| || || || |||
Sbjct: 800 atcattccagcctttcttgcataagcgaaaatgccaccagcttcaatgacaggaccagca 741

                           
Query: 368 tcaccaataggcttca 383
           ||||||||||||||||
Sbjct: 740 tcaccaataggcttca 725
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>dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-482L11, complete
              sequence
          Length = 170638

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcaaagtagtagcaaaactg 177
              ||||||||||||||||||||
Sbjct: 126110 tcaaagtagtagcaaaactg 126129
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>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete
             sequence
          Length = 210959

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   gctcaactaatctgacagca 269
             ||||||||||||||||||||
Sbjct: 65291 gctcaactaatctgacagca 65272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,584,798
Number of Sequences: 3902068
Number of extensions: 2584798
Number of successful extensions: 40564
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40522
Number of HSP's gapped (non-prelim): 43
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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