ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast38b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein) 30 1.4
2PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) ... 30 1.4
3PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein) 30 1.4
4PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein) 30 1.4
5PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) ... 29 2.4
6MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domai... 29 3.1
7MET4_YEAST (P32389) Transcriptional activator of sulfur metaboli... 28 5.3
8YB30_YEAST (P38125) Hypothetical transport protein YBR180W 28 6.9
9PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC ... 27 9.0

>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 342 DGAGTNEEALVRFAKRLSEERKLR 271
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DNPETYEEALKRFAKLLSDRKKLR 380



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>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber|
           protein)
          Length = 386

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 342 DGAGTNEEALVRFAKRLSEERKLR 271
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 342 DGAGTNEEALVRFAKRLSEERKLR 271
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 342 DGAGTNEEALVRFAKRLSEERKLR 271
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)|
          Length = 377

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -3

Query: 342 DGAGTNEEALVRFAKRLSEERKLR 271
           D   T EEAL RFAK LS  +KLR
Sbjct: 348 DSPETYEEALKRFAKLLSNRKKLR 371



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>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1229

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 261  GWFGAACAPRRASWRSGRAPLHWCQHRRRSHTSHCQCLPG 380
            GWFG ACA +R S   G A    C H     T  C+C PG
Sbjct: 931  GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961



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>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4|
           (Methionine-requiring protein 4)
          Length = 672

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 378 RVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 253
           RVN+ NG Y ++  AG + + +   A  ++   ++K+R+ N N+
Sbjct: 364 RVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407



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>YB30_YEAST (P38125) Hypothetical transport protein YBR180W|
          Length = 572

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 290 ESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLV 394
           E +  K +++ S  P+P T ++IP + F++D  L+
Sbjct: 77  EEVAVKSSNSQSRDPSPDTQAHIPYTYFSKDQRLI 111



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>PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 272 AKPTSTPSREEKRDEEALPTMLRDATRCV 186
           A P   P REE  D EAL   + D TR V
Sbjct: 128 ATPIHVPLREETHDLEALAAAVTDRTRMV 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,119,800
Number of Sequences: 219361
Number of extensions: 877847
Number of successful extensions: 2275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2275
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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