ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast37g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|D38090.1|WHTPH2AD Triticum aestivum mRNA for protein H2A, co... 84 2e-13
2emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274) 72 9e-10
3gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complet... 72 9e-10
4dbj|D38088.1|WHTPH2AB Triticum aestivum mRNA for protein H2A, co... 56 5e-05
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
6dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
7dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
8gb|AF493985.1| Triticum aestivum H2A-1 gene, partial sequence 48 0.012
9ref|XM_800574.1| Trypanosoma cruzi strain CL Brener 60S ribosoma... 46 0.049
10ref|XM_809600.1| Trypanosoma cruzi strain CL Brener 60S ribosoma... 46 0.049
11dbj|D87065.1| Triticum aestivum gene for histone H1, complete cd... 46 0.049
12emb|CR848789.11| Zebrafish DNA sequence from clone DKEYP-114B4 i... 44 0.19
13dbj|D38087.1|WHTPH2AA Triticum aestivum mRNA for protein H2A, co... 44 0.19
14gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, com... 42 0.76
15gb|AY587552.1| Hordeum vulgare subsp. vulgare GAMYB-binding prot... 42 0.76
16dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 0.76
17gb|AC168310.6| Mus musculus chromosome 8, clone RP24-345M22, com... 42 0.76
18gb|AC130730.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
19ref|XM_957759.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.0
20ref|XM_328323.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.0
21gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
22gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, comp... 40 3.0
23gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, com... 40 3.0
24emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chro... 40 3.0
25emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete ch... 40 3.0
26emb|AL590488.13| Human DNA sequence from clone RP11-71B19 on chr... 40 3.0
27emb|BX054651.1|CNS09EBZ Single read from an extremity of a full-... 40 3.0
28emb|BX054650.1|CNS09EBY Single read from an extremity of a full-... 40 3.0
29emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 3.0
30gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete se... 40 3.0
31dbj|AK024259.1| Homo sapiens cDNA FLJ14197 fis, clone NT2RP30024... 40 3.0
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
33gb|AC101891.8| Mus musculus chromosome 3, clone RP23-468J10, com... 40 3.0
34gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosom... 40 3.0
35gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368... 40 3.0
36ref|XM_314186.2| Anopheles gambiae str. PEST ENSANGP00000015869 ... 40 3.0
37ref|XM_314184.1| Anopheles gambiae str. PEST ENSANGP00000015868 ... 40 3.0
38gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complet... 40 3.0
39emb|BX005058.3| Zebrafish DNA sequence from clone CH211-112K3 in... 40 3.0
40gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, compl... 40 3.0 
>dbj|D38090.1|WHTPH2AD Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-9
          Length = 704

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 182 ggctactccttggcggcggccttcttcttgggggacttggtagcggtcttcttc 235
           |||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 505 ggctactccttggcggcgaccttcttcttgggggacttggtggaggtcttcttc 452



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 59/69 (85%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                       
Query: 73  tgttcatcgaacaaatgaaagagccaatacagact--ggcatttacatacatgatccaat 130
           |||||||||||| |||| || ||||| ||||||||  |||| ||||| ||| ||||||| 
Sbjct: 632 tgttcatcgaactaatgtaacagccactacagacttaggcaattacacacaggatccaac 573

                    
Query: 131 caaccaaaa 139
           |||||||||
Sbjct: 572 caaccaaaa 564
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>emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274)
          Length = 2546

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 184  ctactccttggcggcggccttcttcttgggggacttggtagcggtcttcttc 235
            |||||||||||||||  |||||||||||||||||||||| | ||||||||||
Sbjct: 2325 ctactccttggcggcaaccttcttcttgggggacttggtggaggtcttcttc 2274
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>gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complete cds
          Length = 2546

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 184  ctactccttggcggcggccttcttcttgggggacttggtagcggtcttcttc 235
            |||||||||||||||  |||||||||||||||||||||| | ||||||||||
Sbjct: 2325 ctactccttggcggcaaccttcttcttgggggacttggtggaggtcttcttc 2274
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>dbj|D38088.1|WHTPH2AB Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-3
          Length = 1153

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 192 tggcggcggccttcttcttgggggacttggtagcggtcttcttc 235
           |||| |||| ||||||||||||||||||||| |||| |||||||
Sbjct: 519 tggctgcggtcttcttcttgggggacttggtggcggccttcttc 476



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 190 cttggcggcggccttcttcttgggggacttggt 222
           ||||| |||||||||||||||||| ||||||||
Sbjct: 494 cttggtggcggccttcttcttgggcgacttggt 462
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 193    ggcggcggccttcttcttgggggacttggt 222
              ||||||||||||||||||| ||||||||||
Sbjct: 410903 ggcggcggccttcttcttgcgggacttggt 410874
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>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1359_D06
          Length = 146805

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 193    ggcggcggccttcttcttgggggacttggt 222
              ||||||||||||||||||| ||||||||||
Sbjct: 139687 ggcggcggccttcttcttgcgggacttggt 139658
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0017C12
          Length = 135356

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 193  ggcggcggccttcttcttgggggacttggt 222
            ||||||||||||||||||| ||||||||||
Sbjct: 7144 ggcggcggccttcttcttgcgggacttggt 7115
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>gb|AF493985.1| Triticum aestivum H2A-1 gene, partial sequence
          Length = 538

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 192 tggcggcggccttcttcttgggggacttggtagcggtcttcttc 235
           ||||||| | ||||||||||||||||||||  || |||||||||
Sbjct: 182 tggcggccgtcttcttcttgggggacttggcggccgtcttcttc 225



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 190 cttggcggcggccttcttcttgggggacttgg 221
           ||||||||| | |||||||||||| |||||||
Sbjct: 207 cttggcggccgtcttcttcttgggcgacttgg 238
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>ref|XM_800574.1| Trypanosoma cruzi strain CL Brener 60S ribosomal protein L5
           (Tc00.1047053510765.60) partial mRNA
          Length = 930

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 187 ctccttggcggcggccttcttct 209
           |||||||||||||||||||||||
Sbjct: 882 ctccttggcggcggccttcttct 860
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>ref|XM_809600.1| Trypanosoma cruzi strain CL Brener 60S ribosomal protein L5
           (Tc00.1047053509671.80) partial mRNA
          Length = 930

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 187 ctccttggcggcggccttcttct 209
           |||||||||||||||||||||||
Sbjct: 882 ctccttggcggcggccttcttct 860
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>dbj|D87065.1| Triticum aestivum gene for histone H1, complete cds, clone:TH325
          Length = 2541

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 190  cttggcggcggccttcttcttgg 212
            |||||||||||||||||||||||
Sbjct: 1507 cttggcggcggccttcttcttgg 1485
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>emb|CR848789.11| Zebrafish DNA sequence from clone DKEYP-114B4 in linkage group 16,
              complete sequence
          Length = 195410

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 98     aatacagactggcatttacata 119
              ||||||||||||||||||||||
Sbjct: 164135 aatacagactggcatttacata 164156
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>dbj|D38087.1|WHTPH2AA Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-2
          Length = 717

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 192 tggcggcggccttcttcttgggggacttgg 221
           |||| |||| ||||||||||||||||||||
Sbjct: 512 tggctgcggtcttcttcttgggggacttgg 483
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>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   aactaagtgtcagctaggcta 186
             |||||||||||||||||||||
Sbjct: 30330 aactaagtgtcagctaggcta 30350
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>gb|AY587552.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein mRNA, complete
           cds
          Length = 2275

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 194 gcggcggccttcttcttgggggacttggtagcggtcttctt 234
           ||||||||||||||    |||||||||| ||||||||||||
Sbjct: 67  gcggcggccttcttggccggggacttggcagcggtcttctt 27
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 190     cttggcggcggccttcttctt 210
               |||||||||||||||||||||
Sbjct: 2981952 cttggcggcggccttcttctt 2981972



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 190     cttggcggcggccttcttct 209
               ||||||||||||||||||||
Sbjct: 3886866 cttggcggcggccttcttct 3886885
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>gb|AC168310.6| Mus musculus chromosome 8, clone RP24-345M22, complete sequence
          Length = 178580

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    aactaagtgtcagctaggcta 186
              |||||||||||||||||||||
Sbjct: 126661 aactaagtgtcagctaggcta 126641
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>gb|AC130730.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0681D04,
              complete sequence
          Length = 163670

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    ccttggcggcggccttcttc 208
              ||||||||||||||||||||
Sbjct: 155639 ccttggcggcggccttcttc 155620
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>ref|XM_957759.1| Neurospora crassa OR74A hypothetical protein (NCU07618.1) partial
            mRNA
          Length = 5403

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  cttcttcttgggggacttgg 221
            ||||||||||||||||||||
Sbjct: 2349 cttcttcttgggggacttgg 2330
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>ref|XM_328323.1| Neurospora crassa OR74A hypothetical protein (NCU07618.1) partial
            mRNA
          Length = 5403

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  cttcttcttgggggacttgg 221
            ||||||||||||||||||||
Sbjct: 2349 cttcttcttgggggacttgg 2330
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>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02,
             complete sequence
          Length = 141027

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ccttggcggcggccttcttc 208
             ||||||||||||||||||||
Sbjct: 54049 ccttggcggcggccttcttc 54030
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>gb|AC161236.6| Mus musculus chromosome 3, clone RP23-403O4, complete sequence
          Length = 206652

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     atacagtcctgactggcctg 74
              ||||||||||||||||||||
Sbjct: 186450 atacagtcctgactggcctg 186469
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>gb|AC113304.15| Mus musculus chromosome 9, clone RP23-431B6, complete sequence
          Length = 202182

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     atacagtcctgactggcctg 74
              ||||||||||||||||||||
Sbjct: 144941 atacagtcctgactggcctg 144960
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>emb|CT010488.9| Mouse DNA sequence from clone RP23-133A3 on chromosome 9, complete
             sequence
          Length = 219139

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    atacagtcctgactggcctg 74
             ||||||||||||||||||||
Sbjct: 56841 atacagtcctgactggcctg 56860
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>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    ccttggcggcggccttcttcttgg 212
              |||||||||| |||||||||||||
Sbjct: 217656 ccttggcggctgccttcttcttgg 217633
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>emb|AL590488.13| Human DNA sequence from clone RP11-71B19 on chromosome 6 Contains part
             of the UTRN gene for utrophin (homologous to dystrophin)
             (DRP, DRP1, DMDL). Contains two CpG islands, complete
             sequence
          Length = 129479

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   accaaaagtctgctcatctt 152
             ||||||||||||||||||||
Sbjct: 60991 accaaaagtctgctcatctt 60972
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>emb|BX054651.1|CNS09EBZ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC32DF05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 819

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 cttggcggcggccttcttct 209
           ||||||||||||||||||||
Sbjct: 364 cttggcggcggccttcttct 383
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>emb|BX054650.1|CNS09EBY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC32DF05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 837

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 cttggcggcggccttcttct 209
           ||||||||||||||||||||
Sbjct: 523 cttggcggcggccttcttct 504
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ccttggcggcggccttcttc 208
             ||||||||||||||||||||
Sbjct: 26351 ccttggcggcggccttcttc 26332
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>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
          Length = 129513

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tcatcgaacaaatgaaagag 95
             ||||||||||||||||||||
Sbjct: 91462 tcatcgaacaaatgaaagag 91481
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>dbj|AK024259.1| Homo sapiens cDNA FLJ14197 fis, clone NT2RP3002484, highly similar to
            Homo sapiens mRNA for KIAA0998 protein
          Length = 4004

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ggtaaaatacagtcctgact 68
            ||||||||||||||||||||
Sbjct: 1396 ggtaaaatacagtcctgact 1415
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     ccttggcggcggccttcttc 208
               ||||||||||||||||||||
Sbjct: 5731675 ccttggcggcggccttcttc 5731656
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>gb|AC101891.8| Mus musculus chromosome 3, clone RP23-468J10, complete sequence
          Length = 174044

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    atacagtcctgactggcctg 74
             ||||||||||||||||||||
Sbjct: 67053 atacagtcctgactggcctg 67072
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>gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosome 13, complete
             sequence
          Length = 132564

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaatcacaggtaaaatacag 60
             ||||||||||||||||||||
Sbjct: 94955 aaatcacaggtaaaatacag 94974
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>gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368K8 containing KIAA0998 gene,
             partial cds, complete sequence
          Length = 185964

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ggtaaaatacagtcctgact 68
             ||||||||||||||||||||
Sbjct: 35400 ggtaaaatacagtcctgact 35419
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>ref|XM_314186.2| Anopheles gambiae str. PEST ENSANGP00000015869
           (ENSANGG00000013380), partial mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 cttggcggcggccttcttct 209
           ||||||||||||||||||||
Sbjct: 474 cttggcggcggccttcttct 455
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>ref|XM_314184.1| Anopheles gambiae str. PEST ENSANGP00000015868
           (ENSANGG00000013379), partial mRNA
          Length = 750

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 cttggcggcggccttcttct 209
           ||||||||||||||||||||
Sbjct: 474 cttggcggcggccttcttct 455
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>gb|AC154440.2| Mus musculus BAC clone RP24-175D9 from 9, complete sequence
          Length = 162520

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     atacagtcctgactggcctg 74
              ||||||||||||||||||||
Sbjct: 114025 atacagtcctgactggcctg 114006
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>emb|BX005058.3| Zebrafish DNA sequence from clone CH211-112K3 in linkage group 17,
             complete sequence
          Length = 170139

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    atcaaatactaaatcacaggtaaa 54
             |||||||||| |||||||||||||
Sbjct: 87427 atcaaatactgaatcacaggtaaa 87450
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>gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, complete sequence
          Length = 158972

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaatcacaggtaaaatacag 60
             ||||||||||||||||||||
Sbjct: 10427 aaatcacaggtaaaatacag 10446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,206,261
Number of Sequences: 3902068
Number of extensions: 2206261
Number of successful extensions: 45138
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44969
Number of HSP's gapped (non-prelim): 169
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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