ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast37f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108077.3| Homo sapiens BAC clone RP11-739G21 from 4, comple... 44 0.33
2dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.33
3gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complet... 42 1.3
4gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, co... 42 1.3
5gb|AE002160.2| Chlamydia muridarum Nigg, complete genome 42 1.3
6ref|XM_513875.1| PREDICTED: Pan troglodytes LOC457385 (LOC457385... 40 5.2
7gb|BC014507.1| Homo sapiens lamin A/C, transcript variant 1, mRN... 40 5.2
8gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.2
9gb|BC015302.1| Mus musculus lamin A, transcript variant 1, mRNA ... 40 5.2
10ref|NM_170708.1| Homo sapiens lamin A/C (LMNA), transcript varia... 40 5.2
11ref|NM_170707.1| Homo sapiens lamin A/C (LMNA), transcript varia... 40 5.2
12gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.2
13gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, com... 40 5.2
14gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Canc... 40 5.2
15ref|XM_844665.1| PREDICTED: Canis familiaris similar to otoferli... 40 5.2
16ref|XM_854558.1| PREDICTED: Canis familiaris similar to otoferli... 40 5.2
17gb|BC018863.2| Homo sapiens lamin A/C, mRNA (cDNA clone IMAGE:31... 40 5.2
18emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chr... 40 5.2
19gb|AY847597.1| Homo sapiens lamin A/C transcript variant 1 (LMNA... 40 5.2
20gb|AY847596.1| Homo sapiens lamin A/C transcript variant 1 (LMNA... 40 5.2
21gb|AY847595.1| Homo sapiens lamin A/C transcript variant 1 (LMNA... 40 5.2
22emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chr... 40 5.2
23emb|X76297.1|RNLAMINA R.norvegicus mRNA for lamin A 40 5.2
24emb|X66870.1|RNLAMA R.norvegicus mRNA for lamin A 40 5.2
25emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.2
26emb|X03444.1|HSLAMAR Human mRNA for nuclear envelope protein lam... 40 5.2
27dbj|AK122732.1| Homo sapiens cDNA FLJ16247 fis, clone HCHON20036... 40 5.2
28emb|CR619166.1| full-length cDNA clone CS0DI010YN06 of Placenta ... 40 5.2
29dbj|AK098128.1| Homo sapiens cDNA FLJ40809 fis, clone TRACH20096... 40 5.2
30dbj|AK056191.1| Homo sapiens cDNA FLJ31629 fis, clone NT2RI20033... 40 5.2
31dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.2
32dbj|AK147150.1| Mus musculus 17 days pregnant adult female amnio... 40 5.2
33ref|XM_693013.1| PREDICTED: Danio rerio similar to Tripartite mo... 40 5.2
34dbj|AK161221.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 5.2
35dbj|AK153295.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.2
36gb|AC022325.5| Homo sapiens BAC clone RP11-391J13 from 4, comple... 40 5.2
37dbj|AK003174.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 5.2
38dbj|AK079972.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 5.2
39gb|AF381029.1|AF381029 Homo sapiens lamin Adel10 mRNA, partial c... 40 5.2
40gb|BC094020.1| Mus musculus lamin A, transcript variant 1, mRNA ... 40 5.2
41dbj|D49733.2| Mus musculus domesticus gene for lamin A/C and C2,... 40 5.2
42gb|AC084626.1|CBRG45C20 Caenorhabditis briggsae cosmid G45C20, c... 40 5.2
43ref|NM_001002016.1| Rattus norvegicus lamin A (Lmna), transcript... 40 5.2
44emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 40 5.2
45emb|AL929243.7| Zebrafish DNA sequence from clone DKEYP-15G8, co... 40 5.2
46gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_5... 40 5.2
47dbj|AK057997.1| Homo sapiens cDNA FLJ25268 fis, clone STM05518, ... 40 5.2
48dbj|AK026584.1| Homo sapiens cDNA: FLJ22931 fis, clone KAT07501,... 40 5.2
49gb|L12401.1|HUMLAMIN03 Human nuclear lamin A and nuclear lamin C... 40 5.2
50emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.2
51gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, comple... 40 5.2
52gb|M13452.1|HUMLAMA Human lamin A mRNA, 3'end 40 5.2
53dbj|D13181.1|MUSLAMCJ Mus musculus mRNA for lamin A, partial cds 40 5.2
54dbj|D86615.1| Polyandrocarpa misakiensis mRNA for retinoic acid ... 40 5.2
55dbj|D86614.1| Polyandrocarpa misakiensis mRNA for retinoic acid ... 40 5.2 
>gb|AC108077.3| Homo sapiens BAC clone RP11-739G21 from 4, complete sequence
          Length = 106983

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 206  gcagagttgcagcaaccatgcaagcaaaaa 235
            ||||||||||||||||||| |||| |||||
Sbjct: 6924 gcagagttgcagcaaccatccaagtaaaaa 6953
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 235     acctacgacgtgcgagcgaact 256
               ||||||||||||||||||||||
Sbjct: 8292365 acctacgacgtgcgagcgaact 8292344
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>gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complete sequence
          Length = 215584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 119    gaggcagaagagccagaggaagaac 143
              ||||| |||||||||||||||||||
Sbjct: 158173 gaggctgaagagccagaggaagaac 158149
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>gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, complete sequence
          Length = 152141

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 215    cagcaaccatgcaagcaaaaa 235
              |||||||||||||||||||||
Sbjct: 108040 cagcaaccatgcaagcaaaaa 108060
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>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome
          Length = 1072950

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 219    aaccatgcaagcaaaaaccta 239
              |||||||||||||||||||||
Sbjct: 898435 aaccatgcaagcaaaaaccta 898455
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>ref|XM_513875.1| PREDICTED: Pan troglodytes LOC457385 (LOC457385), mRNA
          Length = 2580

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2325 gaggcagaagagccagagga 2306
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>gb|BC014507.1| Homo sapiens lamin A/C, transcript variant 1, mRNA (cDNA clone
            MGC:23638 IMAGE:4863480), complete cds
          Length = 2407

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2050 gaggcagaagagccagagga 2031
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     ggacggcgtagtggcggcgg 292
               ||||||||||||||||||||
Sbjct: 1644874 ggacggcgtagtggcggcgg 1644893
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>gb|BC015302.1| Mus musculus lamin A, transcript variant 1, mRNA (cDNA clone
            MGC:19217 IMAGE:4240057), complete cds
          Length = 2354

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1981 gaggcagaagagccagagga 1962
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>ref|NM_170708.1| Homo sapiens lamin A/C (LMNA), transcript variant 3, mRNA
          Length = 3091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1975 gaggcagaagagccagagga 1956
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>ref|NM_170707.1| Homo sapiens lamin A/C (LMNA), transcript variant 1, mRNA
          Length = 3181

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2065 gaggcagaagagccagagga 2046
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     ggacggcgtagtggcggcgg 292
               ||||||||||||||||||||
Sbjct: 2891738 ggacggcgtagtggcggcgg 2891757
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>gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, complete sequence
          Length = 166620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 8461 gaggcagaagagccagagga 8442
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>gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160802

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cagcaaccatgcaagcaaaa 234
             ||||||||||||||||||||
Sbjct: 48932 cagcaaccatgcaagcaaaa 48913
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>ref|XM_844665.1| PREDICTED: Canis familiaris similar to otoferlin isoform b,
            transcript variant 2 (LOC607961), mRNA
          Length = 5994

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  gcagaagagccagaggaaga 141
            ||||||||||||||||||||
Sbjct: 3937 gcagaagagccagaggaaga 3956
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>ref|XM_854558.1| PREDICTED: Canis familiaris similar to otoferlin isoform b,
            transcript variant 3 (LOC607961), mRNA
          Length = 3693

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  gcagaagagccagaggaaga 141
            ||||||||||||||||||||
Sbjct: 1636 gcagaagagccagaggaaga 1655
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>gb|BC018863.2| Homo sapiens lamin A/C, mRNA (cDNA clone IMAGE:3141665)
          Length = 1234

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gaggcagaagagccagagga 138
           ||||||||||||||||||||
Sbjct: 877 gaggcagaagagccagagga 858
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>emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chromosome 1 Contains the
             3' end of the LMNA gene for lamin A/C, the gene for a
             novel protein similar to semaphorins (FLJ12287), a novel
             gene (KIAA0446), the PMF1 gene for polyamine-modulated
             factor 1, the BGLAP gene for bone gamma-carboxyglutamate
             (gla) protein (osteocalcin), the gene for progestin and
             adipoQ receptor family member VI (PAQR6) and the 3' end of
             the gene for Est1p-like protein B (EST1B), complete
             sequence
          Length = 164168

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gaggcagaagagccagagga 138
             ||||||||||||||||||||
Sbjct: 26330 gaggcagaagagccagagga 26311
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>gb|AY847597.1| Homo sapiens lamin A/C transcript variant 1 (LMNA) mRNA, complete
            cds, alternatively spliced
          Length = 1995

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1853 gaggcagaagagccagagga 1834
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>gb|AY847596.1| Homo sapiens lamin A/C transcript variant 1 (LMNA) mRNA, complete
            cds, alternatively spliced
          Length = 1995

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1853 gaggcagaagagccagagga 1834
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>gb|AY847595.1| Homo sapiens lamin A/C transcript variant 1 (LMNA) mRNA, complete
            cds, alternatively spliced
          Length = 1995

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1853 gaggcagaagagccagagga 1834
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>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a
             novel gene and a novel pseudogene, complete sequence
          Length = 119343

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   ttgatttctccagggggctg 378
             ||||||||||||||||||||
Sbjct: 32008 ttgatttctccagggggctg 31989
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>emb|X76297.1|RNLAMINA R.norvegicus mRNA for lamin A
          Length = 2856

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1781 gaggcagaagagccagagga 1762
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>emb|X66870.1|RNLAMA R.norvegicus mRNA for lamin A
          Length = 3091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2017 gaggcagaagagccagagga 1998
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     ggacggcgtagtggcggcgg 292
               ||||||||||||||||||||
Sbjct: 2621830 ggacggcgtagtggcggcgg 2621849
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>emb|X03444.1|HSLAMAR Human mRNA for nuclear envelope protein lamin A precursor
          Length = 2404

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2064 gaggcagaagagccagagga 2045
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>dbj|AK122732.1| Homo sapiens cDNA FLJ16247 fis, clone HCHON2003659, highly  similar
            to LAMIN A
          Length = 2327

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1988 gaggcagaagagccagagga 1969
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>emb|CR619166.1| full-length cDNA clone CS0DI010YN06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1789

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gaggcagaagagccagagga 138
           ||||||||||||||||||||
Sbjct: 382 gaggcagaagagccagagga 363
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>dbj|AK098128.1| Homo sapiens cDNA FLJ40809 fis, clone TRACH2009661, highly similar to
            LAMIN A
          Length = 2404

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2065 gaggcagaagagccagagga 2046
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>dbj|AK056191.1| Homo sapiens cDNA FLJ31629 fis, clone NT2RI2003360, highly similar to
            LAMIN A
          Length = 2016

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1677 gaggcagaagagccagagga 1658
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     gtggcggcggtgctggtgtt 302
               ||||||||||||||||||||
Sbjct: 3349856 gtggcggcggtgctggtgtt 3349837
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>dbj|AK147150.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
            full-length enriched library, clone:I920188N09
            product:lamin A, full insert sequence
          Length = 3128

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2061 gaggcagaagagccagagga 2042
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>ref|XM_693013.1| PREDICTED: Danio rerio similar to Tripartite motif protein 16
           (Estrogen-responsive B box protein) (LOC569616), mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 gcagaagagccagaggaaga 141
           ||||||||||||||||||||
Sbjct: 138 gcagaagagccagaggaaga 157
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>dbj|AK161221.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833421L13 product:lamin A, full insert
            sequence
          Length = 2283

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1926 gaggcagaagagccagagga 1907
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>dbj|AK153295.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830135N05 product:lamin A, full insert
            sequence
          Length = 2359

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2002 gaggcagaagagccagagga 1983
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>gb|AC022325.5| Homo sapiens BAC clone RP11-391J13 from 4, complete sequence
          Length = 193057

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   gaggcagaagagccagaggaagaa 142
             |||||||||||| |||||||||||
Sbjct: 26060 gaggcagaagaggcagaggaagaa 26037
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>dbj|AK003174.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
            enriched library, clone:1100001I13 product:lamin A, full
            insert sequence
          Length = 1756

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1155 gaggcagaagagccagagga 1136
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>dbj|AK079972.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530030G15 product:LAMIN A
           homolog [Mus musculus], full insert sequence
          Length = 624

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gaggcagaagagccagagga 138
           ||||||||||||||||||||
Sbjct: 266 gaggcagaagagccagagga 247
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>gb|AF381029.1|AF381029 Homo sapiens lamin Adel10 mRNA, partial cds, alternatively spliced
          Length = 848

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gaggcagaagagccagagga 138
           ||||||||||||||||||||
Sbjct: 641 gaggcagaagagccagagga 622
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>gb|BC094020.1| Mus musculus lamin A, transcript variant 1, mRNA (cDNA clone
            MGC:102581 IMAGE:4187374), complete cds
          Length = 2344

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1967 gaggcagaagagccagagga 1948
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>dbj|D49733.2| Mus musculus domesticus gene for lamin A/C and C2, complete cds
          Length = 8322

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 6696 gaggcagaagagccagagga 6677
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>gb|AC084626.1|CBRG45C20 Caenorhabditis briggsae cosmid G45C20, complete sequence
          Length = 40165

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaactgggggaaacttttca 58
             ||||||||||||||||||||
Sbjct: 16221 aaactgggggaaacttttca 16202
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>ref|NM_001002016.1| Rattus norvegicus lamin A (Lmna), transcript variant 2, mRNA
          Length = 3091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2017 gaggcagaagagccagagga 1998
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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
              complete sequence
          Length = 180994

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gcagaagagccagaggaaga 141
              ||||||||||||||||||||
Sbjct: 127766 gcagaagagccagaggaaga 127747
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>emb|AL929243.7| Zebrafish DNA sequence from clone DKEYP-15G8, complete sequence
          Length = 159656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   acgaggcagaagagccagag 136
             ||||||||||||||||||||
Sbjct: 86412 acgaggcagaagagccagag 86431
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>gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_54H19, complete sequence
          Length = 164179

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    gaggcagaagagccagagga 138
              ||||||||||||||||||||
Sbjct: 137848 gaggcagaagagccagagga 137867
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>dbj|AK057997.1| Homo sapiens cDNA FLJ25268 fis, clone STM05518, highly similar to
            LAMIN A
          Length = 2290

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1951 gaggcagaagagccagagga 1932
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>dbj|AK026584.1| Homo sapiens cDNA: FLJ22931 fis, clone KAT07501, highly similar to
            HSLAMAR Human mRNA for nuclear envelope protein lamin A
            precursor
          Length = 2412

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 2056 gaggcagaagagccagagga 2037
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>gb|L12401.1|HUMLAMIN03 Human nuclear lamin A and nuclear lamin C gene, exons 3-12 and
            complete alternative mRNAs
          Length = 6110

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 4306 gaggcagaagagccagagga 4287
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     gtggcggcggtgctggtgtt 302
               ||||||||||||||||||||
Sbjct: 1211721 gtggcggcggtgctggtgtt 1211740
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>gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, complete sequence
          Length = 217058

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gaggcagaagagccagagga 138
             ||||||||||||||||||||
Sbjct: 48548 gaggcagaagagccagagga 48567
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>gb|M13452.1|HUMLAMA Human lamin A mRNA, 3'end
          Length = 2522

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1406 gaggcagaagagccagagga 1387
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>dbj|D13181.1|MUSLAMCJ Mus musculus mRNA for lamin A, partial cds
          Length = 2220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  gaggcagaagagccagagga 138
            ||||||||||||||||||||
Sbjct: 1154 gaggcagaagagccagagga 1135
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>dbj|D86615.1| Polyandrocarpa misakiensis mRNA for retinoic acid receptor homologue,
            partial cds
          Length = 2245

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 119  gaggcagaagagccagaggaagaa 142
            ||||| ||||||||||||||||||
Sbjct: 1273 gaggccgaagagccagaggaagaa 1296
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>dbj|D86614.1| Polyandrocarpa misakiensis mRNA for retinoic acid receptor homologue,
            partial cds
          Length = 1987

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 119  gaggcagaagagccagaggaagaa 142
            ||||| ||||||||||||||||||
Sbjct: 1014 gaggccgaagagccagaggaagaa 1037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,607,813
Number of Sequences: 3902068
Number of extensions: 2607813
Number of successful extensions: 52033
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51820
Number of HSP's gapped (non-prelim): 213
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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