>TOP1_METJA (Q59046) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 761

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -1

Query: 281 VEVAGPDEARRLKLENKVAASCSAPV----EFDVLAQPECDTVPVYPEMLHGEELHLCIR 114
           V+ + PD+ R +K+ NKV  +C +P+    + ++   PEC    V  +    EE  +C +
Sbjct: 628 VKYSLPDKGR-IKIPNKVCDACKSPILKIGDREICINPECPLKQVEVK----EEDRICPK 682

Query: 113 IGKTKIICS*TYDKHQQCSSGVICVF 36
            G   I+    Y     CS+   C +
Sbjct: 683 CGAKLILKKGVYGAFYGCSNYPKCKY 708

>YMZ2_YEAST (Q03177) Hypothetical 94.3 kDa Trp-Asp repeats-containing protein|
           in SNZ1-YPK2 intergenic region
          Length = 834

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 175 HSGCANTSNSTGAEQLAATLFSSFSRRASSGPATSTEEL 291
           HS  +N+SN+TG+E+ + +   SF   +SSG + S  +L
Sbjct: 15  HSEFSNSSNTTGSEEESRSHQESFDGESSSGESKSKSKL 53

>COMB_STRPN (P36498) Transport protein comB|
          Length = 449

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 51  SRTTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVELDRGRAARRH 230
           S  T  +   GSGT     +   +Q+E L  QHL   G  +T   ++ +E + G+  + +
Sbjct: 245 SLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGN 304

Query: 231 LILK 242
           L+ K
Sbjct: 305 LLDK 308

>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2|
           precursor
          Length = 503

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
 Frame = +1

Query: 130 SSSPCSISGYTGT-----------VSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPAT 276
           SSS  S+S  T T            +HS  ++++ ST       T  SS S  +SS   T
Sbjct: 137 SSSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTT 196

Query: 277 STEELYXXXXXXXXXXXXXXXXXXXXXXXXATRKRAPSSAT 399
           ST                             +  +A SS+T
Sbjct: 197 STTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSST 237

>PYRG_MYCTU (P0A5U2) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 242 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 129
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>PYRG_MYCBO (P0A5U3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 242 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 129
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>BRAT_DROME (Q8MQJ9) Brain tumor protein|
          Length = 1037

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 130 SSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGP 270
           SSS CS S  + + S S  ++TS  +G    ++++ S+ +  +S+GP
Sbjct: 84  SSSSCSSSSSSSSSSSSSSSSTSGLSGCGSTSSSVISANNVASSNGP 130

>PYRG_MYCLE (P53529) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 590

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 242 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 129
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>NUPL2_XENLA (Q5XGN1) Nucleoporin-like 2|
          Length = 491

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 127 WSSSPCSISGYTGTVSHSGCANTSNST---GAEQLAATLFSSFSRRASSGPAT 276
           +S +P +ISG+  T S+SG    SN+    GA  +AA    +F   +S+ PA+
Sbjct: 323 FSFAPSTISGFGSTASNSGFGAASNAAGFQGAANIAAA--PAFGVASSTAPAS 373

>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)|
          Length = 220

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 130 SSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPATS 279
           SSS  + SG + T + SG ++T+N++G+     T  S  SR  SSG ++S
Sbjct: 10  SSSTNNSSGSSSTNNSSGSSSTNNASGSSSSNNT--SGSSRNNSSGSSSS 57

>PININ_CANFA (P79149) Pinin|
          Length = 773

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 124 RWSSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPATSTEE 288
           R SSS  S S  T + S    ++ S+S+ +   +++  S  SRR SS   TS+ E
Sbjct: 632 RSSSSSSSSSSSTSSSSGGSSSSGSSSSRSSSSSSSSTSGSSRRDSSSSTTSSSE 686

>COMB_STRR6 (P59654) Transport protein comB|
          Length = 449

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 51  SRTTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVELDRGRAARRH 230
           S  T  +   GSGT     +   +Q+E L  QHL   G  ++   ++ +E + G+  + +
Sbjct: 245 SLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELSLLAQKILEAESGKKVQGN 304

Query: 231 LILK 242
           L+ K
Sbjct: 305 LLDK 308

>BEDB_PSEPU (Q07947) Benzene 1,2-dioxygenase system ferredoxin subunit|
          Length = 107

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 194 VLAQPECDTVPVYPEMLHGEELHLCIRIGKTK 99
           V A P C  + VYP  + G+E+H+ +  G+ K
Sbjct: 76  VKALPACKPIKVYPIKIEGDEVHVDLDNGELK 107

>CAAL_SILPO (Q5LRC0) Carboxylate-amine ligase SPO2209 (EC 6.3.-.-)|
          Length = 384

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 57  TTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVEL-----DRGRAA 221
           T L+  ++G  ++D     T    E+  ++ +  HG+S T + R H E      D GRA 
Sbjct: 315 TVLMDELMGMLSEDAEALGT--LPEIARLRQIAEHGNSATRQRRVHAEALARGEDAGRAV 372

Query: 222 RRHLI 236
            RHLI
Sbjct: 373 VRHLI 377

>NADHK_ORYSA (Q6EQG2) Probable NADH kinase (EC 2.7.1.86)|
          Length = 325

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 231 LILKLQPARLVWTSHLDGGAVHWPGANITPDAHHGDTADV-ADAP 362
           L+ + Q   +VW +  + GAV++ G+++     HGDT ++ +DAP
Sbjct: 268 LVKQGQHILVVWYN--EEGAVYFDGSHVMHSIQHGDTLEISSDAP 310

>PYRG_CHLTE (P59040) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 565

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 245 KLENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEELHL 123
           +++NKV   C+   + DV+   +CDT+   P ML  E+L L
Sbjct: 225 EIKNKVGHFCNVH-DLDVIGLNDCDTIYEVPLMLLKEQLDL 264

>YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragment)|
          Length = 373

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 130 SSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPATST 282
           SSS  S S  + T+S +  + TS+S  A     +  SSFS   SS  +++T
Sbjct: 145 SSSKQSSSPQSSTMSSTDSSPTSSSLSASSTTTSSISSFSFSQSSSSSSTT 195

>KITH_HUMAN (P04183) Thymidine kinase, cytosolic (EC 2.7.1.21)|
          Length = 234

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 65  ADAYHRFRNR*SSSCRYGYTDGAPPRAASPDTRGQCHIPAAP 190
           AD YH       S CR  Y   A  + A PD +  C +P  P
Sbjct: 178 ADKYH-------SVCRLCYFKKASGQPAGPDNKENCPVPGKP 212

>RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (PDZ|
           domain-containing guanine nucleotide exchange factor 2)
           (PDZ-GEF2) (RA-GEF-2)
          Length = 1601

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 183 LRQHVELDRGRAARRHLILKLQPARLV 263
           + +H ELDR    + H+++K  P RL+
Sbjct: 399 VHEHRELDRSGTRKGHIVIKATPERLI 425

>SUIS_RABIT (P07768) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
           3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1826

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = +3

Query: 141 VQHLRIHGDSVTFRLRQHVELDRGRAARRHLILKLQPARLVWTSHLDG-----GAVHWPG 305
           VQ L  HG      L   + ++R  +   +       A+ VW +  DG     G V WPG
Sbjct: 411 VQDLHDHGQKYVIILDPAISINRRASGEAYESYDRGNAQNVWVNESDGTTPIVGEV-WPG 469

Query: 306 ANITPD 323
             + PD
Sbjct: 470 DTVYPD 475

>PHC2_HUMAN (Q8IXK0) Polyhomeotic-like protein 2 (hPH2) (Early development|
           regulatory protein 2)
          Length = 858

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 130 SSSPCSISGYTGTVSHSGCANTSN 201
           SSS C+ S  +G  S SGC N+S+
Sbjct: 11  SSSACATSSTSGASSSSGCNNSSS 34

>MAGD2_HUMAN (Q9UNF1) Melanoma-associated antigen D2 (MAGE-D2 antigen) (MAGE-D)|
           (Breast cancer-associated gene 1 protein) (BCG-1) (11B6)
           (Hepatocellular carcinoma-associated protein JCL-1)
          Length = 606

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 ANTSNSTGAEQLAATLFSSFSRRASSGP 270
           +  S +TG  +++  L +S +RRAS GP
Sbjct: 194 SQASGTTGGRRVSKALMASMARRASRGP 221

>KDSA_ARATH (Q9AV97) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS) (AtkdsA)
          Length = 290

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 290 SSSVEVAGPDEARRLKLENKVAASCSAPVEFDVLAQPECDTV 165
           +SS    GP  A  LK+  KV  +   P+  DV    +C+ V
Sbjct: 62  TSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAV 103

>SELU_PSEU2 (Q4ZYK5) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 366

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 136 SPCSI---SGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPA 273
           S CSI    G TGT          NS   E +A    SSF +RA+  PA
Sbjct: 139 SECSIVVLGGMTGTGKTEVLTQLRNSVDLEGIANHRGSSFGKRATGQPA 187

>EFG2_STRCO (O87844) Elongation factor G 2 (EF-G 2)|
          Length = 686

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 162 GDSVTFRLRQHVELDRGRAARRHLILKLQPARLVWTSHLDG 284
           G+ VT  + +HV+ D G     H++L ++P    W    DG
Sbjct: 481 GEGVTGFVHRHVKQDGGAGQFAHIVLDVEP----WEQDADG 517


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,074,748
Number of Sequences: 219361
Number of extensions: 1092148
Number of successful extensions: 3622
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3621
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)