| Clone Name | rbast37b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 43011230 aacaaaaatgaaatccaaaaagaatttt 43011203
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 112109 aacaaaaatgaaatccaaaaagaatttt 112082
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0459B04 Length = 142475 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 8259 aacaaaaatgaaatccaaaaagaatttt 8232
>dbj|AK099265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011G21, full insert sequence Length = 1502 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 1247 aacaaaaatgaaatccaaaaagaatttt 1220
>dbj|AK099263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011E21, full insert sequence Length = 1502 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 1247 aacaaaaatgaaatccaaaaagaatttt 1220
>dbj|AK071351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092O22, full insert sequence Length = 1564 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaatttt 136 ||||||||||||||| |||||||||||| Sbjct: 1310 aacaaaaatgaaatccaaaaagaatttt 1283
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence Length = 135659 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 cccaagaaaacaaaaatgaaa 121 ||||||||||||||||||||| Sbjct: 66606 cccaagaaaacaaaaatgaaa 66586
>gb|AC154832.2| Mus musculus BAC clone RP24-568D4 from chromosome 14, complete sequence Length = 134900 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 aagaaaacaaaaatgaaatcgaaaaagaa 132 ||||||||||||| |||| |||||||||| Sbjct: 82851 aagaaaacaaaaacgaaaacgaaaaagaa 82823
>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence Length = 179691 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 tttgggtattttttccctttt 154 ||||||||||||||||||||| Sbjct: 104671 tttgggtattttttccctttt 104691
>gb|AF121254.1|AF121254 Enterococcus faecium cysteine aminopeptidase (pepC) gene, partial cds; phospho-beta-glucosidase BglB (bglB), beta-glucoside specific transport protein (bglS), transcription antiterminator (bglR), enterocin B precursor (entB), enterocin B immunity protein (eniB), and induction factor-like protein genes, complete cds; and unknown genes Length = 12018 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 112 aaaaatgaaatcgaaaaagaatttt 136 ||||||||||| ||||||||||||| Sbjct: 4626 aaaaatgaaattgaaaaagaatttt 4602
>gb|AC137855.14| Mus musculus chromosome 16, clone RP24-444E8, complete sequence Length = 196783 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tctcagttgtacatacatgg 64 |||||||||||||||||||| Sbjct: 131123 tctcagttgtacatacatgg 131104
>ref|XM_640446.1| Dictyostelium discoideum hypothetical protein (DDB0216929), partial mRNA Length = 4812 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 104 aagaaaacaaaaatgaaatcgaaaaagaattt 135 ||||||| |||||||||| |||||||||||| Sbjct: 1466 aagaaaataaaaatgaaaatgaaaaagaattt 1497
>gb|AC124326.11| Mus musculus chromosome 16, clone RP24-463I7, complete sequence Length = 168107 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tctcagttgtacatacatgg 64 |||||||||||||||||||| Sbjct: 147350 tctcagttgtacatacatgg 147369
>gb|AC002433.2| Homo sapiens BAC clone CTA-317M2 from 7, complete sequence Length = 139919 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 aaatgaaatcgaaaaagaattttg 137 ||||||||| |||||||||||||| Sbjct: 136303 aaatgaaatggaaaaagaattttg 136280
>gb|AC133498.2| Mus musculus BAC clone RP24-241K8 from chromosome 13, complete sequence Length = 159112 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ataaggtaaggggaaaactt 35 |||||||||||||||||||| Sbjct: 64307 ataaggtaaggggaaaactt 64288
>gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosome 8, complete sequence Length = 141671 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ttttttcccttttgtatata 161 |||||||||||||||||||| Sbjct: 74441 ttttttcccttttgtatata 74460
>gb|AC121896.3| Mus musculus BAC clone RP24-159J17 from chromosome 8, complete sequence Length = 146143 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttttttcccttttgtatata 161 |||||||||||||||||||| Sbjct: 3994 ttttttcccttttgtatata 3975
>ref|XM_731324.1| Plasmodium chabaudi chabaudi hypothetical protein (PC102034.00.0) partial mRNA Length = 490 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 aaaaatgaaatcgaaaaaga 131 |||||||||||||||||||| Sbjct: 283 aaaaatgaaatcgaaaaaga 302
>ref|XM_671125.1| Plasmodium berghei strain ANKA hypothetical protein (PB108072.00.0) partial mRNA Length = 2660 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 aaaacaaaaatgaaatcgaaaaag 130 |||| ||||||||||||||||||| Sbjct: 1928 aaaaaaaaaatgaaatcgaaaaag 1951
>gb|AC099742.2| Papio anubis clone RP41-167P22, complete sequence Length = 171612 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 attttttcccttttgtatat 160 |||||||||||||||||||| Sbjct: 103351 attttttcccttttgtatat 103370
>emb|AL138640.1|ATT12K4 Arabidopsis thaliana DNA chromosome 3, BAC clone T12K4 Length = 108879 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 ttttgggtattttttcccttttgt 156 ||||||| |||||||||||||||| Sbjct: 67798 ttttggggattttttcccttttgt 67775
>emb|AL049659.2|ATT29H11 Arabidopsis thaliana DNA chromosome 3, BAC clone T29H11 Length = 97488 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 tattttttcccttttgtatatatg 163 |||||||| ||||||||||||||| Sbjct: 26954 tattttttaccttttgtatatatg 26977
>gb|AC034299.8| Homo sapiens chromosome 18, clone RP11-500P9, complete sequence Length = 130795 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 attttgggtattttttcccttttg 155 ||||||| |||||||||||||||| Sbjct: 63834 attttggttattttttcccttttg 63857
>gb|AC008427.9| Homo sapiens chromosome 5 clone CTC-307M15, complete sequence Length = 175501 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 taacaactctcagttgtacataca 61 |||||||||||||||||| ||||| Sbjct: 6451 taacaactctcagttgtaaataca 6474
>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region Length = 540982 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaaaaagaattttgggtatt 143 |||||||||||||||||||| Sbjct: 270876 gaaaaagaattttgggtatt 270857
>gb|AC112186.2| Homo sapiens chromosome 5 clone RP11-235B3, complete sequence Length = 40690 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 tcgcccaagaaaacaaaaatgaaa 121 |||| ||||||||||||||||||| Sbjct: 40444 tcgcgcaagaaaacaaaaatgaaa 40421
>gb|AC094108.2| Homo sapiens chromosome 5 clone RP11-58B2, complete sequence Length = 162399 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 tcgcccaagaaaacaaaaatgaaa 121 |||| ||||||||||||||||||| Sbjct: 145901 tcgcgcaagaaaacaaaaatgaaa 145924
>gb|AY951949.1| Triticum monococcum CRT/DRE binding factor 3 (CBF3) gene, complete cds Length = 1971 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaggggaaaactttgtaaca 42 |||||||||||||||||||| Sbjct: 1353 aaggggaaaactttgtaaca 1334
>gb|AC011410.6|AC011410 Homo sapiens chromosome 5 clone CTB-78H18, complete sequence Length = 119649 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 aagaaaacaaaaatgaaatc 123 |||||||||||||||||||| Sbjct: 67939 aagaaaacaaaaatgaaatc 67958
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gaaatcgaaaaagaattttg 137 |||||||||||||||||||| Sbjct: 3441495 gaaatcgaaaaagaattttg 3441476
>gb|AC117503.8| Homo sapiens 12 BAC RP11-338K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 218476 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 aattttgggtattttttccctttt 154 |||||||||| ||||||||||||| Sbjct: 111749 aattttgggttttttttccctttt 111772
>gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence Length = 29143 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 104 aagaaaacaaaaatgaaatcgaaaaagaattt 135 ||||||| |||||||||| |||||||||||| Sbjct: 23679 aagaaaataaaaatgaaaatgaaaaagaattt 23648
>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence Length = 103157 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaa 132 |||||||||||||| ||||||||| Sbjct: 89692 aacaaaaatgaaatggaaaaagaa 89669
>gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence Length = 102183 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 aacaaaaatgaaatcgaaaaagaa 132 |||||||||||||| ||||||||| Sbjct: 42385 aacaaaaatgaaatggaaaaagaa 42362
>gb|AC008545.3|AC008545 Homo sapiens chromosome 5 clone CTC-500L4, complete sequence Length = 90493 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 taacaactctcagttgtacataca 61 |||||||||||||||||| ||||| Sbjct: 51931 taacaactctcagttgtaaataca 51954
>emb|BX005271.9| Zebrafish DNA sequence from clone CH211-145F15 in linkage group 5, complete sequence Length = 162019 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gaaatcgaaaaagaattttg 137 |||||||||||||||||||| Sbjct: 31444 gaaatcgaaaaagaattttg 31463
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaatgaaatcgaaaaagaat 133 |||||||||||||||||||| Sbjct: 629 aaatgaaatcgaaaaagaat 610
>gb|AC123915.12| Mus musculus chromosome 1, clone RP23-108H22, complete sequence Length = 177375 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 agaaaacaaaaatgaaatcgaaaa 128 ||||||||||||| |||||||||| Sbjct: 66876 agaaaacaaaaatcaaatcgaaaa 66853
>gb|AC102918.11| Mus musculus chromosome 7, clone RP24-273E13, complete sequence Length = 128992 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cacccaccgtctacctccca 240 |||||||||||||||||||| Sbjct: 24458 cacccaccgtctacctccca 24477
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gaaatcgaaaaagaattttg 137 |||||||||||||||||||| Sbjct: 854561 gaaatcgaaaaagaattttg 854580
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaatgaaatcgaaaaagaat 133 |||||||||||||||||||| Sbjct: 3216370 aaatgaaatcgaaaaagaat 3216351
>emb|AL772205.12| Mouse DNA sequence from clone RP23-162C3 on chromosome 2, complete sequence Length = 142565 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tattttttcccttttgtata 159 |||||||||||||||||||| Sbjct: 138510 tattttttcccttttgtata 138491 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,149,105 Number of Sequences: 3902068 Number of extensions: 4149105 Number of successful extensions: 93432 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93208 Number of HSP's gapped (non-prelim): 224 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)