ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast37a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
4gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 54 3e-04
5emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in... 48 0.021
6gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 ma... 42 1.3
7gb|AC151803.1| Solanum demissum chromosome 5 BAC PGEC979H09 geno... 42 1.3
8gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, comp... 42 1.3
9gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 1.3
10emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 42 1.3
11emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chro... 42 1.3
12emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in... 42 1.3
13emb|BX004761.10| Zebrafish DNA sequence from clone DKEY-11I10 in... 42 1.3
14gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, compl... 42 1.3
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
16gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complet... 42 1.3
17dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
18gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, comple... 42 1.3
19emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chr... 42 1.3
20emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chro... 42 1.3
21ref|NM_021999.2| Homo sapiens integral membrane protein 2B (ITM2... 40 5.2
22gb|AC121832.3| Mus musculus chromosome 10 clone RP24-67D23, comp... 40 5.2
23gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, co... 40 5.2
24gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromo... 40 5.2
25gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequ... 40 5.2
26gb|AC140283.3| Mus musculus BAC clone RP24-510I14 from chromosom... 40 5.2
27gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosom... 40 5.2
28emb|CR749774.14| Zebrafish DNA sequence from clone CH211-167E20 ... 40 5.2
29ref|XM_960957.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 5.2
30gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, c... 40 5.2
31emb|AL357395.13| Human DNA sequence from clone RP11-31L23 on chr... 40 5.2
32gb|AF086918.1| Homo sapiens E3-16 mRNA, complete cds 40 5.2
33gb|AY341247.1| Homo sapiens integral membrane protein 2B (ITM2B)... 40 5.2
34emb|AL139322.13| Human DNA sequence from clone RP11-196P14 on ch... 40 5.2
35emb|AL138742.24| Human DNA sequence from clone RP1-76K10 on chro... 40 5.2
36emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chr... 40 5.2
37gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, co... 40 5.2
38emb|CR382398.1| Plasmodium falciparum chromosome 6, complete seq... 40 5.2
39gb|AC104162.2| Homo sapiens chromosome 3 clone RP11-50F24, compl... 40 5.2
40gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromo... 40 5.2
41gb|AC083836.6| Homo sapiens, clone RP11-90D11, complete sequence 40 5.2
42emb|BX321875.7| Zebrafish DNA sequence from clone CH211-254C8 in... 40 5.2
43emb|CR626358.1| full-length cDNA clone CS0DE009YK12 of Placenta ... 40 5.2
44emb|CR610712.1| full-length cDNA clone CS0DI061YL18 of Placenta ... 40 5.2
45emb|CR590893.1| full-length cDNA clone CS0DN004YE20 of Adult bra... 40 5.2
46gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.2
47gb|AC152398.7| Mus musculus chromosome 18, clone RP23-458M2, com... 40 5.2
48gb|AC024995.8| Homo sapiens, clone RP11-328L11, complete sequence 40 5.2
49dbj|AB168350.1| Macaca fascicularis testis cDNA clone: QtsA-1143... 40 5.2
50gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36... 40 5.2
51ref|NM_072717.2| Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA... 40 5.2
52gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, ... 40 5.2
53gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, r... 40 5.2
54gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.2
55gb|AF136973.1|AF136973 Homo sapiens putative transmembrane prote... 40 5.2
56ref|XM_344562.2| PREDICTED: Rattus norvegicus similar to CG4502-... 40 5.2
57gb|AF449578.1| Pycreus mundtii trnL-trnF intergenic spacer regio... 40 5.2
58gb|AF246221.1|AF246221 Homo sapiens transmembrane protein BRI mR... 40 5.2
59emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in... 40 5.2
60emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 i... 40 5.2
61dbj|AK130048.1| Homo sapiens cDNA FLJ26538 fis, clone KDN09296, ... 40 5.2
62gb|AF152462.1|AF152462 Homo sapiens transmembrane protein BRI (B... 40 5.2
63gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67... 40 5.2
64gb|DQ307173.1| Glossina morsitans morsitans clone TC1637 serine ... 40 5.2
65emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on ch... 40 5.2
66emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on ch... 40 5.2
67gb|AC012557.23| Homo sapiens 3 BAC RP11-245J9 (Roswell Park Canc... 40 5.2
68dbj|AP004220.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.2
69emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chr... 40 5.2 
>ref|NM_184768.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 323 gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggcc 381
           |||| |||||||||  |||||||||| |||||||||||||| || || ||||| |||||
Sbjct: 908 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcc 850
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 323      gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggcc 381
                |||| |||||||||  |||||||||| |||||||||||||| || || ||||| |||||
Sbjct: 20365334 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcc 20365276
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 323      gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggcc 381
                |||| |||||||||  |||||||||| |||||||||||||| || || ||||| |||||
Sbjct: 20358363 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcc 20358305
to top
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence,
            complete sequence
          Length = 152883

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 323  gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggcc 381
            |||| |||||||||  |||||||||| |||||||||||||| || || ||||| |||||
Sbjct: 9634 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcc 9576
to top
>emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in linkage group 23,
              complete sequence
          Length = 220945

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 137    tttatttttatttaaagaaaagcatata 164
              ||||||||||||||||||| ||||||||
Sbjct: 172635 tttatttttatttaaagaacagcatata 172662
to top
>gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 map MAP_LOC, complete
             sequence
          Length = 118497

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   tttatttttatttaaagaaaa 157
             |||||||||||||||||||||
Sbjct: 41417 tttatttttatttaaagaaaa 41437
to top
>gb|AC151803.1| Solanum demissum chromosome 5 BAC PGEC979H09 genomic sequence, complete
             sequence
          Length = 110954

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   tttatttttatttaaagaaaa 157
             |||||||||||||||||||||
Sbjct: 47126 tttatttttatttaaagaaaa 47146
to top
>gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, complete sequence
          Length = 202938

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 314    agcaagttggccaggatgaac 334
              |||||||||||||||||||||
Sbjct: 160101 agcaagttggccaggatgaac 160121
to top
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 314   agcaagttggccaggatgaac 334
             |||||||||||||||||||||
Sbjct: 44537 agcaagttggccaggatgaac 44557
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 137     tttatttttatttaaagaaaagcat 161
               ||||||||||| |||||||||||||
Sbjct: 3000327 tttatttttatgtaaagaaaagcat 3000351
to top
>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5'
              end of the Fgf2 gene for fibroblast growth factor 2, a
              novel gene (A930011G24RIK), a mitochondrial ribosomal
              protein S33 (Mrps33) pseudogene, a novel gene (gene model
              1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a
              novel gene, the 5' end of the Il21 gene for interleukin 21
              and a CpG island, complete sequence
          Length = 133023

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 137    tttatttttatttaaagaaaa 157
              |||||||||||||||||||||
Sbjct: 107274 tttatttttatttaaagaaaa 107294
to top
>emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in linkage group 21,
              complete sequence
          Length = 181119

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     attactaattgattgaatggg 74
              |||||||||||||||||||||
Sbjct: 103352 attactaattgattgaatggg 103372
to top
>emb|BX004761.10| Zebrafish DNA sequence from clone DKEY-11I10 in linkage group 20
             Contains a novel gene and a CpG island, complete sequence
          Length = 132841

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   gtttatttttatttaaagaaa 156
             |||||||||||||||||||||
Sbjct: 33250 gtttatttttatttaaagaaa 33270
to top
>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence
          Length = 166659

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   tttatttttatttaaagaaaa 157
             |||||||||||||||||||||
Sbjct: 99349 tttatttttatttaaagaaaa 99369
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 142      ttttatttaaagaaaagcatatagaaaat 170
                |||| |||||||||||||||||| |||||
Sbjct: 11712444 ttttttttaaagaaaagcatatacaaaat 11712472
to top
>gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complete sequence
          Length = 206624

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   gtttatttttatttaaagaaa 156
             |||||||||||||||||||||
Sbjct: 58243 gtttatttttatttaaagaaa 58263
to top
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 142    ttttatttaaagaaaagcatatagaaaat 170
              |||| |||||||||||||||||| |||||
Sbjct: 147078 ttttttttaaagaaaagcatatacaaaat 147106
to top
>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence
          Length = 228174

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   ccacccccatggccagccctg 365
             |||||||||||||||||||||
Sbjct: 78162 ccacccccatggccagccctg 78142
to top
>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete
             sequence
          Length = 120808

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   tttatttttatttaaagaaaa 157
             |||||||||||||||||||||
Sbjct: 26274 tttatttttatttaaagaaaa 26294
to top
>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete
             sequence
          Length = 120928

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   tttatttttatttaaagaaaa 157
             |||||||||||||||||||||
Sbjct: 87429 tttatttttatttaaagaaaa 87449
to top
>ref|NM_021999.2| Homo sapiens integral membrane protein 2B (ITM2B), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1821 ttatttttatttaaagaaaa 1802
to top
>gb|AC121832.3| Mus musculus chromosome 10 clone RP24-67D23, complete sequence
          Length = 172348

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 348  cccccatggccagccctggacaga 371
            ||||||||||||||| ||||||||
Sbjct: 8685 cccccatggccagccatggacaga 8662
to top
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence
          Length = 232199

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    tatttttatttaaagaaaag 158
              ||||||||||||||||||||
Sbjct: 202914 tatttttatttaaagaaaag 202895
to top
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete
             sequence
          Length = 196547

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttatttttatttaaagaaaa 157
             ||||||||||||||||||||
Sbjct: 10455 ttatttttatttaaagaaaa 10474
to top
>gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequence
          Length = 31889

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tttatttttatttaaagaaa 156
             ||||||||||||||||||||
Sbjct: 21037 tttatttttatttaaagaaa 21056
to top
>gb|AC140283.3| Mus musculus BAC clone RP24-510I14 from chromosome 18, complete
            sequence
          Length = 149264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  ttatttaaagaaaagcatat 163
            ||||||||||||||||||||
Sbjct: 4118 ttatttaaagaaaagcatat 4137
to top
>gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosome 14, complete
             sequence
          Length = 181200

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 150   aaagaaaagcatatagaaaatactactt 177
             ||||||||||| |||| |||||||||||
Sbjct: 66513 aaagaaaagcacatagcaaatactactt 66540
to top
>emb|CR749774.14| Zebrafish DNA sequence from clone CH211-167E20 in linkage group 8,
             complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    actgaatggtacggtacagtagag 46
             |||||||||||||||||| |||||
Sbjct: 80515 actgaatggtacggtacaatagag 80538
to top
>ref|XM_960957.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0295c) partial
            mRNA
          Length = 3192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 146  atttaaagaaaagcatatagaaaa 169
            |||||||||| |||||||||||||
Sbjct: 1992 atttaaagaagagcatatagaaaa 2015
to top
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 348   cccccatggccagccctggacaga 371
             ||||||||||||||| ||||||||
Sbjct: 23836 cccccatggccagccatggacaga 23859
to top
>emb|AL357395.13| Human DNA sequence from clone RP11-31L23 on chromosome 10 Contains the
             TLX1 gene for T-cell leukemia homeobox 1, the 5' end of a
             novel gene, the C10orf1 gene for chromosome 10 open
             reading frame 1 and four CpG islands, complete sequence
          Length = 51099

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tttatttttatttaaagaaa 156
             ||||||||||||||||||||
Sbjct: 13451 tttatttttatttaaagaaa 13470
to top
>gb|AF086918.1| Homo sapiens E3-16 mRNA, complete cds
          Length = 1752

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1727 ttatttttatttaaagaaaa 1708
to top
>gb|AY341247.1| Homo sapiens integral membrane protein 2B (ITM2B) gene, complete cds
          Length = 31401

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ttatttttatttaaagaaaa 157
             ||||||||||||||||||||
Sbjct: 30040 ttatttttatttaaagaaaa 30021
to top
>emb|AL139322.13| Human DNA sequence from clone RP11-196P14 on chromosome 13 Contains the
             ITM2B gene for integral membrane protein 2B (BRI FBD E25B
             E3-16) and a CpG island, complete sequence
          Length = 120773

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ttatttttatttaaagaaaa 157
             ||||||||||||||||||||
Sbjct: 94260 ttatttttatttaaagaaaa 94241
to top
>emb|AL138742.24| Human DNA sequence from clone RP1-76K10 on chromosome 6 Contains gene
             KIAA1009 or FLJ13551 and a CpG island, complete sequence
          Length = 118648

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gactggttattactaattga 65
             ||||||||||||||||||||
Sbjct: 41423 gactggttattactaattga 41404
to top
>emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chromosome 6, complete
             sequence
          Length = 112124

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttatttttatttaaagaaaa 157
             ||||||||||||||||||||
Sbjct: 22695 ttatttttatttaaagaaaa 22714
to top
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence
          Length = 201073

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   ttatttaaagaaaagcatat 163
             ||||||||||||||||||||
Sbjct: 50718 ttatttaaagaaaagcatat 50699
to top
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    atttaaagaaaagcatatagaaaa 169
              |||||||||| |||||||||||||
Sbjct: 251809 atttaaagaagagcatatagaaaa 251786
to top
>gb|AC104162.2| Homo sapiens chromosome 3 clone RP11-50F24, complete sequence
          Length = 178337

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tttaaagaaaagcatataga 166
             ||||||||||||||||||||
Sbjct: 27313 tttaaagaaaagcatataga 27294
to top
>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete
              sequence
          Length = 158234

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    ttatttttatttaaagaaaa 157
              ||||||||||||||||||||
Sbjct: 114855 ttatttttatttaaagaaaa 114874
to top
>gb|AC083836.6| Homo sapiens, clone RP11-90D11, complete sequence
          Length = 173428

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    catggccagccctggacaga 371
              ||||||||||||||||||||
Sbjct: 139058 catggccagccctggacaga 139077
to top
>emb|BX321875.7| Zebrafish DNA sequence from clone CH211-254C8 in linkage group 16,
             complete sequence
          Length = 169994

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tttttatttaaagaaaagca 160
             ||||||||||||||||||||
Sbjct: 17597 tttttatttaaagaaaagca 17578
to top
>emb|CR626358.1| full-length cDNA clone CS0DE009YK12 of Placenta of Homo sapiens
            (human)
          Length = 1810

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1752 ttatttttatttaaagaaaa 1733
to top
>emb|CR610712.1| full-length cDNA clone CS0DI061YL18 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1741 ttatttttatttaaagaaaa 1722
to top
>emb|CR590893.1| full-length cDNA clone CS0DN004YE20 of Adult brain of Homo sapiens
            (human)
          Length = 1764

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1734 ttatttttatttaaagaaaa 1715
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 310    gtaaagcaagttggccaggatgaa 333
              ||||||||||||||||| ||||||
Sbjct: 690882 gtaaagcaagttggccatgatgaa 690859
to top
>gb|AC152398.7| Mus musculus chromosome 18, clone RP23-458M2, complete sequence
          Length = 180614

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    tatttttatttaaagaaaag 158
              ||||||||||||||||||||
Sbjct: 167197 tatttttatttaaagaaaag 167216
to top
>gb|AC024995.8| Homo sapiens, clone RP11-328L11, complete sequence
          Length = 171873

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   catggccagccctggacaga 371
             ||||||||||||||||||||
Sbjct: 39610 catggccagccctggacaga 39629
to top
>dbj|AB168350.1| Macaca fascicularis testis cDNA clone: QtsA-11432, similar to human
            integral membrane protein 2B (ITM2B), mRNA, RefSeq:
            NM_021999.2
          Length = 1851

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1763 ttatttttatttaaagaaaa 1744
to top
>gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone
             BACR05N10, complete sequence
          Length = 169600

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   gtttatttttatttaaagaaaagc 159
             ||||||||||||||||| ||||||
Sbjct: 94491 gtttatttttatttaaaaaaaagc 94468
to top
>ref|NM_072717.2| Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA, complete cds
          Length = 2215

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  tttatttttatttaaagaaa 156
            ||||||||||||||||||||
Sbjct: 2208 tttatttttatttaaagaaa 2189
to top
>gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, complete cds
          Length = 2144

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 2083 ttatttttatttaaagaaaa 2064
to top
>gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone
             BACR01A03, complete sequence
          Length = 155254

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   gtttatttttatttaaagaaaagc 159
             ||||||||||||||||| ||||||
Sbjct: 67577 gtttatttttatttaaaaaaaagc 67554
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 283     cccctgagggagcgcccagttgaa 306
               |||||||| |||||||||||||||
Sbjct: 3214193 cccctgagcgagcgcccagttgaa 3214170
to top
>gb|AF136973.1|AF136973 Homo sapiens putative transmembrane protein E3-16 mRNA, complete cds
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1821 ttatttttatttaaagaaaa 1802
to top
>ref|XM_344562.2| PREDICTED: Rattus norvegicus similar to CG4502-PA (predicted)
           (LOC364660), mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 caggatgaactccgtgttgg 344
           ||||||||||||||||||||
Sbjct: 405 caggatgaactccgtgttgg 386
to top
>gb|AF449578.1| Pycreus mundtii trnL-trnF intergenic spacer region, plastid
           sequence
          Length = 409

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 141 tttttatttaaagaaaagcatatagaaa 168
           ||||| |||||| |||||||||||||||
Sbjct: 170 tttttttttaaataaaagcatatagaaa 143
to top
>gb|AF246221.1|AF246221 Homo sapiens transmembrane protein BRI mRNA, complete cds
          Length = 1853

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1786 ttatttttatttaaagaaaa 1767
to top
>emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in linkage group 8,
             complete sequence
          Length = 149121

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    gaaataacacaacaaattaa 106
             ||||||||||||||||||||
Sbjct: 12200 gaaataacacaacaaattaa 12181
to top
>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9,
             complete sequence
          Length = 171835

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   tttttatttaaagaaaagcatata 164
             ||||||||||||||| ||||||||
Sbjct: 18789 tttttatttaaagaacagcatata 18766
to top
>dbj|AK130048.1| Homo sapiens cDNA FLJ26538 fis, clone KDN09296, highly similar to
            Integral membrane protein 2B
          Length = 1825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1765 ttatttttatttaaagaaaa 1746
to top
>gb|AF152462.1|AF152462 Homo sapiens transmembrane protein BRI (BRI) mRNA, complete cds
          Length = 1843

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1776 ttatttttatttaaagaaaa 1757
to top
>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete
              sequence
          Length = 262745

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    gtttatttttatttaaagaaaagc 159
              ||||||||||||||||| ||||||
Sbjct: 168226 gtttatttttatttaaaaaaaagc 168203
to top
>gb|DQ307173.1| Glossina morsitans morsitans clone TC1637 serine protease inhibitor 4
            (Spn4) mRNA, complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  ttatttttatttaaagaaaa 157
            ||||||||||||||||||||
Sbjct: 1361 ttatttttatttaaagaaaa 1342
to top
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete
             sequence
          Length = 207724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tttatttttatttaaagaaa 156
             ||||||||||||||||||||
Sbjct: 91146 tttatttttatttaaagaaa 91165
to top
>emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on chromosome X, complete
            sequence
          Length = 202742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  acttctcctccttgtctggg 193
            ||||||||||||||||||||
Sbjct: 9870 acttctcctccttgtctggg 9851
to top
>gb|AC012557.23| Homo sapiens 3 BAC RP11-245J9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 189220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   tttaaagaaaagcatataga 166
             ||||||||||||||||||||
Sbjct: 31347 tttaaagaaaagcatataga 31366
to top
>dbj|AP004220.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1483D9
          Length = 162604

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   catggccagccctggacaga 371
             ||||||||||||||||||||
Sbjct: 29375 catggccagccctggacaga 29356
to top
>emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chromosome 6, complete
             sequence
          Length = 163140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttatttttatttaaagaaaa 157
             ||||||||||||||||||||
Sbjct: 64981 ttatttttatttaaagaaaa 65000


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,955,315
Number of Sequences: 3902068
Number of extensions: 4955315
Number of successful extensions: 142069
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141787
Number of HSP's gapped (non-prelim): 282
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top