ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast36g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC091584.1| Xenopus tropicalis MGC97537 protein, mRNA (cDNA c... 38 5.7
2ref|NM_001030460.1| Xenopus tropicalis MGC97537 protein (MGC9753... 38 5.7
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.7
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 5.7
5emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 38 5.7

>gb|BC091584.1| Xenopus tropicalis MGC97537 protein, mRNA (cDNA clone MGC:97537
            IMAGE:5383384), complete cds
          Length = 2479

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   gggccatattatacccagt 37
            |||||||||||||||||||
Sbjct: 1945 gggccatattatacccagt 1963



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>ref|NM_001030460.1| Xenopus tropicalis MGC97537 protein (MGC97537), mRNA
          Length = 2479

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   gggccatattatacccagt 37
            |||||||||||||||||||
Sbjct: 1945 gggccatattatacccagt 1963



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       atattatacccagtaacaa 42
                |||||||||||||||||||
Sbjct: 21958604 atattatacccagtaacaa 21958586



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       atattatacccagtaacaa 42
                |||||||||||||||||||
Sbjct: 21886949 atattatacccagtaacaa 21886931



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>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138308

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    atattatacccagtaacaa 42
             |||||||||||||||||||
Sbjct: 64732 atattatacccagtaacaa 64714


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 726,276
Number of Sequences: 3902068
Number of extensions: 726276
Number of successful extensions: 40654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40619
Number of HSP's gapped (non-prelim): 35
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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