ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast36f03 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC6_MOUSE (Q8R313) Exocyst complex component 6 (Exocyst complex component| Sec15A) (Sec15-like 1) Length = 802 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +1 Query: 109 HYPQEHTIYITDTVKHHTSCIYMEVLKSSPLHLHHSVELMKENCAYMGKSRRINQDQ 279 +Y Y ++++ H+ I +K + SV L K+N GK+ +N D+ Sbjct: 192 NYCMSDLTYGLESIRKHSDKIGEAAMKQAQQQKSFSVALQKQNNMRFGKNMHVNNDR 248
>DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus| antigen) Length = 2871 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +1 Query: 73 QKHQRVVLVPCFHYPQEHTIYITDTVKHHTSC 168 QKH + +++ YPQ T+ T+ + HH +C Sbjct: 616 QKHYQTLVIQLPGYPQHQTVTTTE-ITHHGTC 646
>RNG2_SCHPO (O14188) Ras GTPase-activating-like protein rng2 (Ring assembly| protein 2) Length = 1489 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 43 KHSSIKYHKQQKHQRVVLVPCFHYPQEHTIYIT 141 + S KY + + R VLV H PQ+ +YIT Sbjct: 1390 RFGSFKYPALKLYDRGVLVSISHMPQKEKLYIT 1422
>MRAY_STAAW (Q8NX36) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAU (P68784) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAS (Q6GA30) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAR (Q6GHQ3) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAN (P68783) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAM (P68782) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAC (Q5HGP9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAAB (Q2YXE0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>MRAY_STAA3 (Q2FHQ5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 321 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +2 Query: 101 LVFITLKNIPSTSLIQLNIIHHAF----IWKYSSLHHYTCITAWNS*KKIAHIWA 253 L+FI L + T + L + I+K S +HH+ + W+ K + WA Sbjct: 252 LIFIGLVFVIETLSVMLQVASFKLTGKRIFKMSPIHHHFELIGWSEWKVVTVFWA 306
>YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic| region Length = 2014 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +2 Query: 56 SSITNNRSTKGLY*YLVFITLKNIPSTSLIQLNIIHHAFIWKYSSLHHYT 205 +S ++N KGL +++ I L N ++L I WK H YT Sbjct: 576 TSTSSNLYFKGLLCWILLIGLMNYKDEQYLKLQIPQLFLFWKVLLTHTYT 625 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,001,807 Number of Sequences: 219361 Number of extensions: 804250 Number of successful extensions: 1877 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1877 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
