ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast36e12 |
|---|---|
| Clone Library Name | barley_pub |
>OSTA_XYLFT (Q87AI9) Organic solvent tolerance protein precursor| Length = 792 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 123 FCLRLVFLVSIASLSFVCGQWGRGETWS 40 F RLV + S++SL G +G GETW+ Sbjct: 331 FSSRLVGMSSLSSLQSTVGVYGTGETWT 358
>OSTA_XYLFA (Q9PF41) Organic solvent tolerance protein precursor| Length = 792 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 123 FCLRLVFLVSIASLSFVCGQWGRGETWS 40 F RLV + S++SL G +G GETW+ Sbjct: 331 FSSRLVGMSSLSSLQSTVGVYGTGETWT 358
>THAP3_HUMAN (Q8WTV1) THAP domain-containing protein 3| Length = 239 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +2 Query: 44 QVSPRPHCPQTNDKLAIDTRKTNLRQNPNKQKSSFSQLL 160 QVSPR PQ + + T LR+ PNKQ S S L Sbjct: 146 QVSPRR--PQATEAVGRPTGPAGLRRTPNKQPSDHSYAL 182
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 105 FLVSIASLSFVCGQWGRGETWSDVTLPPKKKEK 7 F +IA+ + VC Q G+ TW TL P+ E+ Sbjct: 1100 FCDTIAAYAHVCAQHGKVVTWRTATLCPQSCEE 1132
>ROS1_ARATH (Q9SJQ6) ROS1 protein (Repressor of silencing 1) (DEMETER-like| protein 1) Length = 1393 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 68 PQTNDKLAIDTRKTNLRQNPNKQKSS 145 PQ N+K+ +DTR T ++ P K + S Sbjct: 416 PQQNNKILVDTRVTVSKKKPTKSEKS 441
>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2067 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +2 Query: 35 TSDQVSPRPHCPQTNDKLAIDTRKTNLRQNPNKQKSSFSQLLAARV 172 T ++ SPRP+ PQT + T + + +P + +S + L ++ Sbjct: 1214 TPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQI 1259
>DHAS_SYNY3 (Q55512) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 280 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = -1 Query: 361 KGAALNAVQIAEML 320 KGAALNAVQIAE+L Sbjct: 261 KGAALNAVQIAELL 274
>STON2_HUMAN (Q8WXE9) Stonin-2 (Stoned B)| Length = 905 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -3 Query: 344 RCPDCRNAMK*PPFYHCFMCHIALSIDGLM---YSSHFELSFGLST 216 R PD +A P HCF CH+ L D + +++H + F + T Sbjct: 797 RLPDKNSASGHP---HCFFCHLELGSDREVPSRFANHVNVEFSMPT 839
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +2 Query: 35 TSDQVSPRPHCPQTNDKLAIDTRKTNLRQNPNKQKSSFSQLLAARV 172 T ++ SPRP+ PQT + T + + +P + +S + L ++ Sbjct: 1211 TPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQI 1256
>DHAS_PROMA (P49420) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 343 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -1 Query: 361 KGAALNAVQIAEML 320 KGAALNA+QIAE+L Sbjct: 326 KGAALNAIQIAELL 339
>DHAS_MYCTU (P0A542) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 345 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -1 Query: 361 KGAALNAVQIAEML*SD 311 KGAALN +QIAE+L +D Sbjct: 328 KGAALNTIQIAELLTAD 344
>DHAS_MYCBO (P0A543) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 345 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -1 Query: 361 KGAALNAVQIAEML*SD 311 KGAALN +QIAE+L +D Sbjct: 328 KGAALNTIQIAELLTAD 344
>DHAS_MYCSM (P41404) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 346 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -1 Query: 361 KGAALNAVQIAEML*SD 311 KGAALN +QIAE+L +D Sbjct: 329 KGAALNTIQIAELLAAD 345
>NBEA_MOUSE (Q9EPN1) Protein neurobeachin (Lysosomal trafficking regulator 2)| Length = 2936 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 326 NAMK*PPFYHCFMCHIALSIDGLMYSSHFELSFGLST*QKERKTGFSHLLHAHVQP 159 N K P+ +CF + G+ YS+HF + + T K + GF H + QP Sbjct: 262 NVDKDKPYLYCFR-----TSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQP 312
>NBEA_HUMAN (Q8NFP9) Protein neurobeachin (Lysosomal trafficking regulator 2)| (Protein BCL8B) Length = 2946 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 326 NAMK*PPFYHCFMCHIALSIDGLMYSSHFELSFGLST*QKERKTGFSHLLHAHVQP 159 N K P+ +CF + G+ YS+HF + + T K + GF H + QP Sbjct: 272 NVDKDKPYLYCFR-----TSKGVGYSAHFVGNCLIVTSLKSKGKGFQHCVKYDFQP 322
>FUMH_YEAST (P08417) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)| (Fumarase) Length = 488 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 20 LGGKVTSDQVSPRPHCPQT 76 LGGK+ S QV P HC Q+ Sbjct: 144 LGGKIGSKQVHPNNHCNQS 162
>ACSA_CRYPV (Q27549) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 694 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 146 RSFFACLDFALGWSFWCQLQVCRSSVDNGVEVKP 45 RS CL L W +L VC + VD E++P Sbjct: 95 RSSGTCLQDRLAWFLNGKLNVCDNCVDRWAEIQP 128
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +2 Query: 38 SDQVSPRPHCPQTNDKLAIDTRKTNLRQNPNKQKSSFSQLLAARV 172 S Q SPRPH P ND+L+I T+ ++K F + + AR+ Sbjct: 1327 SPQSSPRPHRP-NNDRLSILTKLV----KKGEKKGLFVEKMPARI 1366
>VWF_PIG (Q28833) Von Willebrand factor precursor (vWF) (Fragment)| Length = 2482 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 105 FLVSIASLSFVCGQWGRGETWSDVTLPPKKKEK 7 F +IA+ + VC Q G+ TW TL P+ E+ Sbjct: 774 FCDTIAAYARVCAQHGKVVTWRTATLCPQNCEE 806 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,155,194 Number of Sequences: 219361 Number of extensions: 886928 Number of successful extensions: 2089 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2089 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
