ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast36d12 |
|---|---|
| Clone Library Name | barley_pub |
>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)| Length = 390 Score = 101 bits (252), Expect = 4e-22 Identities = 50/73 (68%), Positives = 57/73 (78%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRRSSRRTYTLLGSMLFMFVV 223 G GN FM AD+VQALPLVSTFWG++LFGEYRRSSR+TYTLL SML MF+V Sbjct: 318 GFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRRSSRKTYTLLISMLLMFIV 377 Query: 222 AMSVLMASSAHRK 184 A++VLMASS HRK Sbjct: 378 AVAVLMASSGHRK 390
>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)| Length = 398 Score = 100 bits (249), Expect = 8e-22 Identities = 51/73 (69%), Positives = 55/73 (75%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRRSSRRTYTLLGSMLFMFVV 223 G GN FM ADSVQALPLVSTFWGVVLFGEYRRSSR+TY LL MLFMF+ Sbjct: 326 GFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFIS 385 Query: 222 AMSVLMASSAHRK 184 A++VLMASS HRK Sbjct: 386 AVAVLMASSGHRK 398
>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)| Length = 401 Score = 99.0 bits (245), Expect = 2e-21 Identities = 49/73 (67%), Positives = 55/73 (75%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRRSSRRTYTLLGSMLFMFVV 223 G GN FM ADSVQALPLVSTFWG+VLFGEYR+SS+RTY LL SML MFV Sbjct: 329 GFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGIVLFGEYRKSSKRTYALLVSMLAMFVA 388 Query: 222 AMSVLMASSAHRK 184 A+++LMASS HRK Sbjct: 389 AVAILMASSGHRK 401
>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)| Length = 413 Score = 87.8 bits (216), Expect = 6e-18 Identities = 43/73 (58%), Positives = 50/73 (68%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRRSSRRTYTLLGSMLFMFVV 223 G GN FM +D+VQALPLVSTFWG+ LFGEYRRSS RTY LL ML MF V Sbjct: 337 GFGNGLQFMGGQAAGYAASDAVQALPLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTV 396 Query: 222 AMSVLMASSAHRK 184 A+ +LMAS+ R+ Sbjct: 397 AVGLLMASAGERE 409
>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)| Length = 376 Score = 42.7 bits (99), Expect = 2e-04 Identities = 22/48 (45%), Positives = 26/48 (54%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRRSSRRTY 259 G GN+ FM + L FWGV+LFGEYRRSSR+TY Sbjct: 328 GFGNSLQFMGGQAAGYQQQSLCRHF-LCKHFWGVLLFGEYRRSSRKTY 374
>Y2503_LACPL (Q88UI3) Putative sugar uptake protein lp_2503| Length = 285 Score = 37.0 bits (84), Expect = 0.011 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = -3 Query: 402 GLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLGSMLFMF- 229 G+GN F FM A S+ + +V STF + L GE++ Y ++GS+L + Sbjct: 217 GIGNLFMFMAMAQIGQAVAYSLSQMGIVISTFGSIYLLGEHKTKREMVYVVIGSILVIVG 276 Query: 228 VVAMSVLMA 202 VA+S++ A Sbjct: 277 GVALSLMKA 285
>GCH1_RHOBA (Q7UJJ7) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 229 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 77 YTTSVLIEELASLSAVAIQAPDRHAMHEQRWLRQSGFLCAEEAM 208 +T + LIE+ S VA+ H+ R +R+ G LC AM Sbjct: 163 HTVANLIEDRLSARGVAVVVESTHSCMTMRGIRKPGSLCLTSAM 206
>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2| Length = 364 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -2 Query: 169 PTLLMHGMA---IGSLDSDGREASKFFDEDGCCVNLDECDACHIL 44 PTL H MA + + D G E K ED C NL +A H L Sbjct: 252 PTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTL 296
>TLN1_MOUSE (P26039) Talin-1| Length = 2541 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 170 LRQSGFLCAEEAMSTDMATTNMKSMLPSSVYVLLDDLRYSPNSTTPQ 310 + S L A +A+STD A+ N+KS L ++ + D + T Q Sbjct: 1310 MSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMCTQQ 1356
>TMEM8_HUMAN (Q9HCN3) Transmembrane protein 8 precursor (M83 protein)| Length = 771 Score = 28.1 bits (61), Expect = 5.2 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 8/98 (8%) Frame = -3 Query: 270 RRTYTLLGSMLFMFVVAMSVLMASSAHRKPL*RNQRCSCMAWRSGAWIATAERLASSSMR 91 R + +LG LF FV+ S+ HR+ +C +W+ A+ L SM Sbjct: 653 RGMWNMLGPCLFAFVIMASMWAYRCGHRR------QCYPTSWQRWAFYL----LPGVSMA 702 Query: 90 TDVV*TWTSAMHATSYRW--------LENSGTVIISPP 1 + + +TS M + +Y + L S +++ PP Sbjct: 703 SVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPP 740
>TLN1_HUMAN (Q9Y490) Talin-1| Length = 2541 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 170 LRQSGFLCAEEAMSTDMATTNMKSMLPSSVYVLLDDLRYSPNSTTPQ 310 + S L A +A+STD A N+KS L ++ + D + T Q Sbjct: 1310 MSSSKLLLAAKALSTDPAAPNLKSQLAAAARAVTDSINQLITMCTQQ 1356
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -2 Query: 163 LLMHGMAIGS-LDSDGREASKFFDEDGCCVNLDE 65 LLMHG +GS + G K +E G +N+ E Sbjct: 18 LLMHGKEVGSIIGKKGESVKKMREESGARINISE 51
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -2 Query: 163 LLMHGMAIGS-LDSDGREASKFFDEDGCCVNLDE 65 LLMHG +GS + G K +E G +N+ E Sbjct: 18 LLMHGKEVGSIIGKKGESVKKMREESGARINISE 51
>YKGA_BACSU (O34497) Hypothetical protein ykgA| Length = 263 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +2 Query: 86 SVLIEELASLSAVAIQAPDRHAMHEQRWLRQSGFLCAEEAMSTDM 220 S L+E L S + + P R + EQ + R GF+ E+A + M Sbjct: 60 SRLVEALRSHNVEVVLLPVRDGLPEQVFTRDIGFVIGEKAFLSSM 104
>NADA_SALTI (Q8Z8B8) Quinolinate synthetase A| Length = 347 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Frame = +2 Query: 74 VYTTSV---LIEELASLSAVAIQAPDRHAMHEQRWLRQSGFLCAEEAMST-----DMATT 229 V T+S+ LIE L SL I APDRH + + ++ LC + A A T Sbjct: 153 VVTSSIAVELIEHLDSLGEKIIWAPDRHLGNYVQKQTRADVLCWQGACIVHDEFKTQALT 212 Query: 230 NMKSMLPSSVYVL 268 +K + P + ++ Sbjct: 213 RLKKIYPDAAILV 225
>DUS_RHILP (P41504) Probable tRNA-dihydrouridine synthase (EC 1.-.-.-)| Length = 317 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -3 Query: 153 MAWRSGAWIATAERLASSSMRTDVV*TWTSAMHATSYR 40 +AWR GA + E +AS + D +W S + A +R Sbjct: 23 LAWRFGAGLVVTEMVASRELVNDTAESW-SRLKAAGFR 59
>ATKA_SALTI (Q8Z8E4) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 559 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 294 FGEYRRSSRRTYTLLGSMLFMFVVAMSVLMASSAHRKP 181 FGE R+ LL +M F+FVV ++V+M + P Sbjct: 270 FGEAAGDRRQGRALLWAMSFIFVVCVAVVMWAEVQGNP 307
>ATKA_SALPA (Q5PCJ8) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 559 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 294 FGEYRRSSRRTYTLLGSMLFMFVVAMSVLMASSAHRKP 181 FGE R+ LL +M F+FVV ++V+M + P Sbjct: 270 FGEAAGDRRQGRALLWAMSFIFVVCVAVVMWAEVQGNP 307
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -2 Query: 163 LLMHGMAIGS-LDSDGREASKFFDEDGCCVNLDE 65 LLMHG +GS + G K +E G +N+ E Sbjct: 18 LLMHGKEVGSIIGKKGETVKKMREESGARINISE 51
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -2 Query: 163 LLMHGMAIGS-LDSDGREASKFFDEDGCCVNLDE 65 LLMHG +GS + G K +E G +N+ E Sbjct: 18 LLMHGKEVGSIIGKKGETVKKMREESGARINISE 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,536,476 Number of Sequences: 219361 Number of extensions: 609933 Number of successful extensions: 1867 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1867 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
