>gb|AC146718.2| Oryza sativa chromosome 3  B1130H05 genomic sequence, complete sequence
          Length = 49565

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                         
Query: 317   gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
             ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 34004 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 34063

                                      
Query: 377   cgcttcttcttgacgctgtccgccc 401
             ||||||||||| |||||||||||||
Sbjct: 34064 cgcttcttcttcacgctgtccgccc 34088

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                            
Query: 317      gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
                ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 26151822 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 26151763

                                         
Query: 377      cgcttcttcttgacgctgtccgccc 401
                ||||||||||| |||||||||||||
Sbjct: 26151762 cgcttcttcttcacgctgtccgccc 26151738

>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence,
            complete sequence
          Length = 139187

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                        
Query: 317  gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
            ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 4728 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 4787

                                     
Query: 377  cgcttcttcttgacgctgtccgccc 401
            ||||||||||| |||||||||||||
Sbjct: 4788 cgcttcttcttcacgctgtccgccc 4812

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                            
Query: 317      gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
                ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 26243131 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 26243072

                                         
Query: 377      cgcttcttcttgacgctgtccgccc 401
                ||||||||||| |||||||||||||
Sbjct: 26243071 cgcttcttcttcacgctgtccgccc 26243047

>dbj|AK064735.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C07, full
           insert sequence
          Length = 661

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                       
Query: 317 gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
           ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 397 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 338

                                    
Query: 377 cgcttcttcttgacgctgtccgccc 401
           ||||||||||| |||||||||||||
Sbjct: 337 cgcttcttcttcacgctgtccgccc 313

>dbj|AK063641.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G09, full
           insert sequence
          Length = 749

 Score =  137 bits (69), Expect = 3e-29
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                       
Query: 317 gtctggcggcggaggcgcttccggagcttgcgcagcttgtgcttgttcatcttgcgtttc 376
           ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 395 gtctggcggcggaggcgcttccgtagcttgcggagcttgtgcttgttcatcttgcgcttc 336

                                    
Query: 377 cgcttcttcttgacgctgtccgccc 401
           ||||||||||| |||||||||||||
Sbjct: 335 cgcttcttcttcacgctgtccgccc 311

>emb|AL139077.2|CJ11168X4 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             4/6
          Length = 282183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   ctcctataaccaaaccaaaat 212
             |||||||||||||||||||||
Sbjct: 86124 ctcctataaccaaaccaaaat 86144

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 288     gccgggatccaggcgcggcggcggc 312
               |||||||||||||||| ||||||||
Sbjct: 2804401 gccgggatccaggcgctgcggcggc 2804425

>gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complete sequence
          Length = 162214

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    aaccaaaataacaggaggaaa 224
              |||||||||||||||||||||
Sbjct: 146950 aaccaaaataacaggaggaaa 146970

>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete
              sequence
          Length = 174754

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    ccagtgtggcagcagcactg 258
              ||||||||||||||||||||
Sbjct: 118617 ccagtgtggcagcagcactg 118598

>gb|AC161121.3| Pan troglodytes BAC clone CH251-720M8 from chromosome 7, complete
             sequence
          Length = 183573

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatgagttagaccagcattt 72
             ||||||||||||||||||||
Sbjct: 67411 aatgagttagaccagcattt 67392

>gb|AC084381.6| Homo sapiens BAC clone RP11-20K20 from 7, complete sequence
          Length = 129727

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatgagttagaccagcattt 72
             ||||||||||||||||||||
Sbjct: 74177 aatgagttagaccagcattt 74158

>gb|AY232099.1| Drosophila yakuba clone yak-ad_CG11876 mRNA sequence
          Length = 597

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 350 agcttgtgcttgttcatcttgcgt 373
           ||||||||||| ||||||||||||
Sbjct: 581 agcttgtgcttcttcatcttgcgt 558

>emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 in linkage group 21,
             complete sequence
          Length = 110730

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   gcttgtgcttgttcatcttg 370
             ||||||||||||||||||||
Sbjct: 70199 gcttgtgcttgttcatcttg 70180

>emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 105068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ccaggcgcggcggcggctca 315
             ||||||||||||||||||||
Sbjct: 98799 ccaggcgcggcggcggctca 98818

>ref|XM_964957.1| PREDICTED: Tribolium castaneum similar to CG2083-PA (LOC658580), mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  cgtttccgcttcttcttgac 390
            ||||||||||||||||||||
Sbjct: 1181 cgtttccgcttcttcttgac 1162

>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    aggcgcggcggcggctcagg 317
              ||||||||||||||||||||
Sbjct: 226441 aggcgcggcggcggctcagg 226422

>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    aggcgcggcggcggctcagg 317
              ||||||||||||||||||||
Sbjct: 138911 aggcgcggcggcggctcagg 138892

>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   aggcgcggcggcggctcagg 317
             ||||||||||||||||||||
Sbjct: 86103 aggcgcggcggcggctcagg 86122

>emb|AJ312124.1|EAC312124 Eubacterium acidaminophilum ORF1 (partial), ORF2, ORF3, uvrC, hprK,
            hymA, hymb, hymC, hymD, fdhB-I, fdhA-I, mog, mobA and
            fdhD genes
          Length = 16133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  tcctggctccttgtcattacagtg 137
            |||||||| |||||||||||||||
Sbjct: 1238 tcctggcttcttgtcattacagtg 1215

>emb|AJ243297.1|HSA243297 Homo sapiens partial RET gene, exons 2 to 20
          Length = 30430

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cagcccattcctggctcctt 125
             ||||||||||||||||||||
Sbjct: 25966 cagcccattcctggctcctt 25947

>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tggggaaagaacagtacaaa 54
             ||||||||||||||||||||
Sbjct: 56972 tggggaaagaacagtacaaa 56991

>gb|AC008646.7| Homo sapiens chromosome 5 clone CTB-182O9, complete sequence
          Length = 174928

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    tttgaagctttatttgccagaaat 93
             |||||||||||||||| |||||||
Sbjct: 54987 tttgaagctttatttggcagaaat 55010

>gb|AE005738.1| Caulobacter crescentus CB15 section 64 of 359 of the complete genome
          Length = 10037

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 299  ggcgcggcggcggctcaggt 318
            ||||||||||||||||||||
Sbjct: 4645 ggcgcggcggcggctcaggt 4664

>gb|AC124971.15| Medicago truncatula clone mth2-22h8, complete sequence
          Length = 122754

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   catttgaagctttatttgcc 87
            ||||||||||||||||||||
Sbjct: 8280 catttgaagctttatttgcc 8261

>gb|AC010864.11| Homo sapiens chromosome 10 clone RP11-351D16, complete sequence
          Length = 205794

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    cagcccattcctggctcctt 125
              ||||||||||||||||||||
Sbjct: 123723 cagcccattcctggctcctt 123704

>gb|AC008415.6| Homo sapiens chromosome 5 clone CTC-283O18, complete sequence
          Length = 168368

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 70     tttgaagctttatttgccagaaat 93
              |||||||||||||||| |||||||
Sbjct: 139056 tttgaagctttatttggcagaaat 139079

>gb|AC151582.3| Pan troglodytes BAC clone RP43-3F18 from chromosome 7, complete
             sequence
          Length = 197992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aatgagttagaccagcattt 72
             ||||||||||||||||||||
Sbjct: 58122 aatgagttagaccagcattt 58141

>emb|AL928988.14| Mouse DNA sequence from clone RP23-402M7 on chromosome 2, complete
             sequence
          Length = 121977

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   attacagtgtttgaaggtac 148
             ||||||||||||||||||||
Sbjct: 42109 attacagtgtttgaaggtac 42090

>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2
          Length = 83478

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   caaaataacaggaggaaaccatca 230
             |||||||||| |||||||||||||
Sbjct: 63548 caaaataacaagaggaaaccatca 63525

>gb|AC005993.2|AC005993 Homo sapiens PAC clone RP6-114E22 from 14, complete sequence
          Length = 143943

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     gaacagtacaaatgagttagacca 66
              |||||||||||||||| |||||||
Sbjct: 113067 gaacagtacaaatgagatagacca 113090

>emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequence BAC R-233L14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195007

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    gaacagtacaaatgagttagacca 66
             |||||||||||||||| |||||||
Sbjct: 78188 gaacagtacaaatgagatagacca 78211

>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    agcttgtgcttgttcatctt 369
              ||||||||||||||||||||
Sbjct: 275563 agcttgtgcttgttcatctt 275544

>emb|AL713968.9| Mouse DNA sequence from clone RP23-387L21 on chromosome X, complete
            sequence
          Length = 100240

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 207  caaaataacaggaggaaaccatca 230
            ||||||||||||| ||||||||||
Sbjct: 8560 caaaataacaggaagaaaccatca 8583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,073,568
Number of Sequences: 3902068
Number of extensions: 4073568
Number of successful extensions: 80701
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80485
Number of HSP's gapped (non-prelim): 216
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)