ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast36b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450594.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
3dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
4dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
5gb|AY108404.1| Zea mays PCO135296 mRNA sequence 141 2e-30
6dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 44 0.36
7ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative... 42 1.4
8gb|AC125620.5| Rattus norvegicus 4 BAC CH230-9J2 (Children's Hos... 42 1.4
9gb|AC027655.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.4
10ref|NM_024260.3| Mus musculus RIKEN cDNA 1700034M03 gene (170003... 42 1.4
11gb|BC002304.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 1.4
12gb|AY254697.1| Mus musculus Bcl2-like protein mRNA, complete cds 42 1.4
13dbj|AK134533.1| Mus musculus adult male medulla oblongata cDNA, ... 42 1.4
14gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, c... 42 1.4
15dbj|AK006602.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.4
16dbj|AK042031.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.4
17dbj|AK075898.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 1.4
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19gb|BC036294.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 1.4
20gb|BC043092.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cD... 42 1.4
21gb|AC066688.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.4
22ref|XM_231428.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.4
23dbj|AK217072.1| Mus musculus cDNA, clone:Y2G0140I16, strand:minu... 42 1.4
24dbj|AK129458.1| Mus musculus mRNA for mKIAA1861 protein 42 1.4
25gb|BC091288.1| Rattus norvegicus similar to RIKEN cDNA 1700034M0... 42 1.4
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
27emb|AL670181.6| Mouse DNA sequence from clone RP23-216P24 on chr... 42 1.4
28gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, compl... 40 5.6
29ref|XM_001003992.1| PREDICTED: Mus musculus similar to cingulin-... 40 5.6
30emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 40 5.6
31gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, comp... 40 5.6
32gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.6
33emb|X60784.1|CGTUBB1 Cricetulus griseus (chinese hamster) mRNA f... 40 5.6
34gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Canc... 40 5.6
35gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell... 40 5.6
36ref|NM_176339.1| Drosophila melanogaster CG9674-RD, transcript v... 40 5.6
37ref|NM_168687.1| Drosophila melanogaster CG9674-RC, transcript v... 40 5.6
38ref|NM_168686.1| Drosophila melanogaster CG9674-RB, transcript v... 40 5.6
39ref|NM_140665.1| Drosophila melanogaster CG9674-RA, transcript v... 40 5.6
40gb|AY094734.1| Drosophila melanogaster GH26789 full insert cDNA 40 5.6
41gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell... 40 5.6
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.6
43gb|BT003224.1| Drosophila melanogaster LP11387 full insert cDNA 40 5.6
44dbj|AB186125.1| Mus musculus JACOP mRNA for junction-associated ... 40 5.6
45dbj|AK173252.1| Mus musculus mRNA for mKIAA1749 protein 40 5.6
46ref|XM_563658.1| Anopheles gambiae str. PEST ENSANGP00000026985 ... 40 5.6
47gb|BC039211.1| Mus musculus cingulin-like 1, mRNA (cDNA clone IM... 40 5.6
48gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, r... 40 5.6
49gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59... 40 5.6
50gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 5.6
51emb|AM040443.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS... 40 5.6
52emb|AM040442.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS... 40 5.6
53ref|NM_026599.4| Mus musculus cingulin-like 1 (Cgnl1), transcrip... 40 5.6 
>ref|XM_450594.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1737

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 287  gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 346
            |||||||||||||||||| | ||||||||||||||||| |||||| | ||||||||||||
Sbjct: 1404 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 1345

                                                                        
Query: 347  gcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccagaggcgg 406
            || |||||||||   ||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 1344 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 1285

                           
Query: 407  tcgccggcgcggacg 421
            || ||||| ||||||
Sbjct: 1284 tcaccggcacggacg 1270
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Plus

                                                                            
Query: 287      gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 346
                |||||||||||||||||| | ||||||||||||||||| |||||| | ||||||||||||
Sbjct: 11690439 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 11690498

                                                                            
Query: 347      gcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccagaggcgg 406
                || |||||||||   ||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 11690499 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 11690558

                               
Query: 407      tcgccggcgcggacg 421
                || ||||| ||||||
Sbjct: 11690559 tcaccggcacggacg 11690573
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Plus

                                                                          
Query: 287    gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 346
              |||||||||||||||||| | ||||||||||||||||| |||||| | ||||||||||||
Sbjct: 125073 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 125132

                                                                          
Query: 347    gcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccagaggcgg 406
              || |||||||||   ||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 125133 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 125192

                             
Query: 407    tcgccggcgcggacg 421
              || ||||| ||||||
Sbjct: 125193 tcaccggcacggacg 125207
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>dbj|AK105487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full
            insert sequence
          Length = 1737

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 287  gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 346
            |||||||||||||||||| | ||||||||||||||||| |||||| | ||||||||||||
Sbjct: 1404 gggtagcggtgggcgcatgcattccaggggttgtcggcatcgggtgcagagtcacggagc 1345

                                                                        
Query: 347  gcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccagaggcgg 406
            || |||||||||   ||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 1344 gcacgccagacgttactgcaagccttgaagccggtgccgaaggcaagcatccagaggcgg 1285

                           
Query: 407  tcgccggcgcggacg 421
            || ||||| ||||||
Sbjct: 1284 tcaccggcacggacg 1270
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>gb|AY108404.1| Zea mays PCO135296 mRNA sequence
          Length = 554

 Score =  141 bits (71), Expect = 2e-30
 Identities = 119/135 (88%)
 Strand = Plus / Minus

                                                                       
Query: 287 gggtagcggtgggcgcatccgttccaggggttgtcggcgtcgggtccggagtcacggagc 346
           |||||||||||| ||||||||||||| |||||||||||||||||  ||| ||| ||||||
Sbjct: 226 gggtagcggtggacgcatccgttccatgggttgtcggcgtcgggcgcggcgtcgcggagc 167

                                                                       
Query: 347 gcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccagaggcgg 406
           ||||||||||||  |||||| |||||| | || || ||||| || |||||||||||||||
Sbjct: 166 gcgcgccagacgttgctgcacgccttgaaccccgtcccgaacgccagcatccagaggcgg 107

                          
Query: 407 tcgccggcgcggacg 421
           |||||||| ||||||
Sbjct: 106 tcgccggcccggacg 92
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 97      gatggagcggagtggatcaagg 118
               ||||||||||||||||||||||
Sbjct: 3028260 gatggagcggagtggatcaagg 3028239
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>ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative senescence-associated
            protein 15 (OSJNBa0036D19.6), mRNA
          Length = 1797

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 341  cggagcgcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccag 400
            |||||||||||||||||| |||||  |  |||| |||||| ||||||| ||| |  ||||
Sbjct: 1487 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaagccgatctgccag 1428

                                 
Query: 401  aggcggtcgccggcgcggacg 421
            | ||||| ||||  |||||||
Sbjct: 1427 acgcggtggccgcggcggacg 1407
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>gb|AC125620.5| Rattus norvegicus 4 BAC CH230-9J2 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 122542

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    ttaggagaagcatctgttcat 76
             |||||||||||||||||||||
Sbjct: 20272 ttaggagaagcatctgttcat 20252
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>gb|AC027655.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-318M11, complete
              sequence
          Length = 104804

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     ttaggagaagcatctgttcat 76
              |||||||||||||||||||||
Sbjct: 100455 ttaggagaagcatctgttcat 100435
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>ref|NM_024260.3| Mus musculus RIKEN cDNA 1700034M03 gene (1700034M03Rik), mRNA
          Length = 3543

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>gb|BC002304.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:8233
            IMAGE:3591600), complete cds
          Length = 2124

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 1067 ttaggagaagcatctgttcat 1047
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>gb|AY254697.1| Mus musculus Bcl2-like protein mRNA, complete cds
          Length = 3539

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2515 ttaggagaagcatctgttcat 2495
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>dbj|AK134533.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330404O15 product:Bcl2-like
            protein homolog [Mus musculus], full insert sequence
          Length = 5256

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 4321 ttaggagaagcatctgttcat 4301
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>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence
          Length = 144359

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 341   cggagcgcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccag 400
             |||||||||||||||||| |||||  |  |||| |||||| ||||||| ||| |  ||||
Sbjct: 71834 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaagccgatctgccag 71893

                                  
Query: 401   aggcggtcgccggcgcggacg 421
             | ||||| ||||  |||||||
Sbjct: 71894 acgcggtggccgcggcggacg 71914
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>dbj|AK006602.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700034M03 product:RIKEN cDNA 1700034M03
           gene, full insert sequence
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  ttaggagaagcatctgttcat 76
           |||||||||||||||||||||
Sbjct: 748 ttaggagaagcatctgttcat 728
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>dbj|AK042031.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630053E16 product:hypothetical protein,
            full insert sequence
          Length = 3678

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2502 ttaggagaagcatctgttcat 2482
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>dbj|AK075898.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310043D14 product:hypothetical protein,
            full insert sequence
          Length = 3543

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                           
Query: 341     cggagcgcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccag 400
               |||||||||||||||||| |||||  |  |||| |||||| ||||||| ||| |  ||||
Sbjct: 3638993 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaagccgatctgccag 3639052

                                    
Query: 401     aggcggtcgccggcgcggacg 421
               | ||||| ||||  |||||||
Sbjct: 3639053 acgcggtggccgcggcggacg 3639073
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>gb|BC036294.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:30584
            IMAGE:3500316), complete cds
          Length = 3516

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2462 ttaggagaagcatctgttcat 2442
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>gb|BC043092.1| Mus musculus RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:58011
            IMAGE:6405356), complete cds
          Length = 4854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2479 ttaggagaagcatctgttcat 2459
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>gb|AC066688.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-438J16, complete
            sequence
          Length = 176367

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 7973 ttaggagaagcatctgttcat 7953
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>ref|XM_231428.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene
            (predicted) (LOC312083), mRNA
          Length = 3541

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2511 ttaggagaagcatctgttcat 2491
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>dbj|AK217072.1| Mus musculus cDNA, clone:Y2G0140I16, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000050225, based on BLAT search
          Length = 413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  ttaggagaagcatctgttcat 76
           |||||||||||||||||||||
Sbjct: 319 ttaggagaagcatctgttcat 299
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>dbj|AK129458.1| Mus musculus mRNA for mKIAA1861 protein
          Length = 3504

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 2472 ttaggagaagcatctgttcat 2452
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>gb|BC091288.1| Rattus norvegicus similar to RIKEN cDNA 1700034M03 gene, mRNA (cDNA
            clone IMAGE:7304986), partial cds
          Length = 2133

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ttaggagaagcatctgttcat 76
            |||||||||||||||||||||
Sbjct: 1073 ttaggagaagcatctgttcat 1053
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                           
Query: 341     cggagcgcgcgccagacgacgctgcaggccttgtagccggtgccgaaggcgagcatccag 400
               |||||||||||||||||| |||||  |  |||| |||||| ||||||| ||| |  ||||
Sbjct: 3638914 cggagcgcgcgccagacggcgctgttgcacttgaagccggagccgaagccgatctgccag 3638973

                                    
Query: 401     aggcggtcgccggcgcggacg 421
               | ||||| ||||  |||||||
Sbjct: 3638974 acgcggtggccgcggcggacg 3638994
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>emb|AL670181.6| Mouse DNA sequence from clone RP23-216P24 on chromosome X, complete
              sequence
          Length = 166660

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 229    gggttggggctggggttggtagttg 253
              ||||||||||||||| |||||||||
Sbjct: 101051 gggttggggctgggggtggtagttg 101027
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>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   cagctgcttcttctgctccgcctc 207
             |||||||| |||||||||||||||
Sbjct: 37946 cagctgctccttctgctccgcctc 37969
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>ref|XM_001003992.1| PREDICTED: Mus musculus similar to cingulin-like 1 isoform 1
            (LOC677485), mRNA
          Length = 6465

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            |||||||| |||||||||||||||
Sbjct: 2890 cagctgctccttctgctccgcctc 2867
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>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    ttgtagccggtgccgaaggc 390
              ||||||||||||||||||||
Sbjct: 159098 ttgtagccggtgccgaaggc 159079
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>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence
          Length = 233476

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    cagctgcttcttctgctccgcctc 207
              |||||||| |||||||||||||||
Sbjct: 124439 cagctgctccttctgctccgcctc 124462
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     gaggcggtcgccggcgcgga 419
               ||||||||||||||||||||
Sbjct: 3028592 gaggcggtcgccggcgcgga 3028573
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>emb|X60784.1|CGTUBB1 Cricetulus griseus (chinese hamster) mRNA for beta tubulin (clone
           B16T)
          Length = 1609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 gaagccagcacaaatttatt 140
           ||||||||||||||||||||
Sbjct: 36  gaagccagcacaaatttatt 55
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>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166452

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 235    gggctggggttggtagttgtgcct 258
              ||||||||| ||||||||||||||
Sbjct: 129849 gggctggggatggtagttgtgcct 129826
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>gb|AC010688.6| Drosophila melanogaster 3L BAC RP98-11G5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 201313

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    cagctgcttcttctgctccgcctc 207
              ||||||||||||||||| ||||||
Sbjct: 201281 cagctgcttcttctgctgcgcctc 201304
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>ref|NM_176339.1| Drosophila melanogaster CG9674-RD, transcript variant D (CG9674),
            mRNA
          Length = 7298

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 6034 cagctgcttcttctgctgcgcctc 6011
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>ref|NM_168687.1| Drosophila melanogaster CG9674-RC, transcript variant C (CG9674),
            mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 2243 cagctgcttcttctgctgcgcctc 2220
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>ref|NM_168686.1| Drosophila melanogaster CG9674-RB, transcript variant B (CG9674),
            mRNA
          Length = 3693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 2429 cagctgcttcttctgctgcgcctc 2406
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>ref|NM_140665.1| Drosophila melanogaster CG9674-RA, transcript variant A (CG9674),
            mRNA
          Length = 7191

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 5927 cagctgcttcttctgctgcgcctc 5904
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>gb|AY094734.1| Drosophila melanogaster GH26789 full insert cDNA
          Length = 6745

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 5889 cagctgcttcttctgctgcgcctc 5866
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>gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181437

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    cagctgcttcttctgctccgcctc 207
              ||||||||||||||||| ||||||
Sbjct: 128448 cagctgcttcttctgctgcgcctc 128425
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     gttccaggggttgtcggcgt 326
               ||||||||||||||||||||
Sbjct: 6953543 gttccaggggttgtcggcgt 6953562



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     gttccaggggttgtcggcgt 326
               ||||||||||||||||||||
Sbjct: 6589047 gttccaggggttgtcggcgt 6589066
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>gb|BT003224.1| Drosophila melanogaster LP11387 full insert cDNA
          Length = 3073

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            ||||||||||||||||| ||||||
Sbjct: 2225 cagctgcttcttctgctgcgcctc 2202
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>dbj|AB186125.1| Mus musculus JACOP mRNA for junction-associated coiled-coil protein,
            complete cds
          Length = 4492

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            |||||||| |||||||||||||||
Sbjct: 3333 cagctgctccttctgctccgcctc 3310
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>dbj|AK173252.1| Mus musculus mRNA for mKIAA1749 protein
          Length = 5522

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            |||||||| |||||||||||||||
Sbjct: 1661 cagctgctccttctgctccgcctc 1638
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>ref|XM_563658.1| Anopheles gambiae str. PEST ENSANGP00000026985
           (ENSANGG00000023805), partial mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 265 ggtgggcaccggcaatgcca 284
           ||||||||||||||||||||
Sbjct: 850 ggtgggcaccggcaatgcca 831
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>gb|BC039211.1| Mus musculus cingulin-like 1, mRNA (cDNA clone IMAGE:4188141),
           partial cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 184 cagctgcttcttctgctccgcctc 207
           |||||||| |||||||||||||||
Sbjct: 379 cagctgctccttctgctccgcctc 356
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>gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone
              BACR48E21, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    cagctgcttcttctgctccgcctc 207
              ||||||||||||||||| ||||||
Sbjct: 110940 cagctgcttcttctgctgcgcctc 110917
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>gb|AE003526.4| Drosophila melanogaster chromosome 3L, section 59 of 83 of the complete
              sequence
          Length = 281100

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    cagctgcttcttctgctccgcctc 207
              ||||||||||||||||| ||||||
Sbjct: 205154 cagctgcttcttctgctgcgcctc 205177
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 389     gcgagcatccagaggcggtc 408
               ||||||||||||||||||||
Sbjct: 2169904 gcgagcatccagaggcggtc 2169885
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>emb|AM040443.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS1 and 23S rRNA gene
           (partial), strain BMG5.11, isolate J7
          Length = 501

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 gggttggggctggggttggt 248
           ||||||||||||||||||||
Sbjct: 205 gggttggggctggggttggt 224
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>emb|AM040442.1| Frankia sp. BMG5.11 16S rRNA gene (partial), ITS1 and 23S rRNA gene
           (partial), strain BMG5.11, isolate J1
          Length = 507

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 gggttggggctggggttggt 248
           ||||||||||||||||||||
Sbjct: 211 gggttggggctggggttggt 230
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>ref|NM_026599.4| Mus musculus cingulin-like 1 (Cgnl1), transcript variant 1, mRNA
          Length = 6754

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  cagctgcttcttctgctccgcctc 207
            |||||||| |||||||||||||||
Sbjct: 2893 cagctgctccttctgctccgcctc 2870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,779,836
Number of Sequences: 3902068
Number of extensions: 2779836
Number of successful extensions: 54661
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54355
Number of HSP's gapped (non-prelim): 306
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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