ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast36a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin... 25 2.6
2ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 29 3.2
3GPR52_HUMAN (Q9Y2T5) Probable G-protein coupled receptor 52 29 3.2
4WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interactin... 25 3.4
5WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ... 25 3.4
6HAND1_SHEEP (Q28555) Heart- and neural crest derivatives-express... 28 7.2

>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 25.4 bits (54), Expect(2) = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 GAPPPQPPFFSLNKNYAD 181
           GAPPP PP  S+   + D
Sbjct: 426 GAPPPPPPSTSIRNGFQD 443



 Score = 22.3 bits (46), Expect(2) = 2.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 50  KHGSTQSTKPKAHEHSTKSQLQQ*ITGAPPPQPP 151
           ++GST    P   +  ++S +    +G  PP PP
Sbjct: 387 RNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPP 420



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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
            (Ataxin-2-related protein)
          Length = 1075

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 23   LYSPHFAACKHGSTQSTKPKAHEHSTKSQLQQ*ITGAPPPQP 148
            +Y+ H     HG T         H T++ +Q  IT APPP P
Sbjct: 945  VYAIHHQQLPHGFTNMA------HVTQAHVQTGITAAPPPHP 980



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>GPR52_HUMAN (Q9Y2T5) Probable G-protein coupled receptor 52|
          Length = 361

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
 Frame = -1

Query: 205 LVVPCLLRICIVFI-----------------*GKEGRLWWWCSCYXXXXXXLGTMFMGFG 77
           LV PC LRICI+ I                  G  G ++ WC+            F GF 
Sbjct: 152 LVTPCRLRICIILIWIYSCLIFLPSFFGWGKPGYHGDIFEWCA----TSWLTSAYFTGFI 207

Query: 76  FCTLSRP-VFASC-KVWRIKSVCQ 11
            C L  P  F  C   + I  +C+
Sbjct: 208 VCLLYAPAAFVVCFTYFHIFKICR 231



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>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 493

 Score = 25.0 bits (53), Expect(2) = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 GAPPPQPPFFSLNKNYAD 181
           GAPPP PP  S+   + D
Sbjct: 416 GAPPPPPPSTSVRNGFQD 433



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 50  KHGSTQSTKPKAHEHSTKSQLQQ*ITGAPPPQPP 151
           ++GST    P   +  ++S +    +G  PP PP
Sbjct: 377 RNGSTARALPATPQLPSRSGMDSPRSGPRPPLPP 410



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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 25.0 bits (53), Expect(2) = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 GAPPPQPPFFSLNKNYAD 181
           GAPPP PP  S+   + D
Sbjct: 410 GAPPPPPPSTSVRNGFQD 427



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 50  KHGSTQSTKPKAHEHSTKSQLQQ*ITGAPPPQPP 151
           ++GST    P   +  ++S +    +G  PP PP
Sbjct: 371 RNGSTARALPATPQLPSRSGMDSPRSGPRPPLPP 404



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>HAND1_SHEEP (Q28555) Heart- and neural crest derivatives-expressed protein 1|
           (Extraembryonic tissues, heart, autonomic nervous system
           and neural crest derivatives-expressed protein 1)
           (eHAND)
          Length = 204

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 87  MNIVPSHSYNSK*QEHHHHNLPSFP 161
           MN+V S++++     HHHH  P+ P
Sbjct: 1   MNLVGSYAHHHHHHHHHHHPHPAHP 25


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,192,652
Number of Sequences: 219361
Number of extensions: 941455
Number of successful extensions: 2181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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