>RUMA_THIDA (Q3SK67) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 432

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 82  LDPKAARAGKLNLSLTFPLLHGVAW 156
           L+   AR GK+  S+  P LHG +W
Sbjct: 94  LEENLARIGKVRPSVLLPALHGPSW 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,990,609
Number of Sequences: 219361
Number of extensions: 745218
Number of successful extensions: 1525
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)