ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast35d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 3e-26
2gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
3gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AK098913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
6dbj|AK062166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
7ref|NM_187487.1| Oryza sativa (japonica cultivar-group), predic... 88 2e-14
8dbj|AK069762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
9dbj|AK058655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
10emb|AL935282.14| Zebrafish DNA sequence from clone CH211-281O21 ... 50 0.005
11ref|NM_128490.2| Arabidopsis thaliana oxidoreductase AT2G29360 m... 44 0.32
12ref|NM_128472.1| Arabidopsis thaliana oxidoreductase AT2G29150 m... 44 0.32
13gb|DQ056552.1| Arabidopsis thaliana putative tropinone reductase... 44 0.32
14gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map... 44 0.32
15gb|AY090333.1| Arabidopsis thaliana At2g29360/F16P2.26 mRNA, com... 44 0.32
16gb|AY045613.1| Arabidopsis thaliana At2g29360/F16P2.26 mRNA, com... 44 0.32
17gb|AY086609.1| Arabidopsis thaliana clone 2618 mRNA, complete se... 44 0.32
18emb|CR846084.6| Zebrafish DNA sequence from clone DKEYP-121E7 in... 42 1.3
19emb|BX897743.8| Zebrafish DNA sequence from clone CH211-164N21 i... 42 1.3
20gb|AE008753.1| Salmonella typhimurium LT2, section 57 of 220 of ... 42 1.3
21emb|BX936308.13| Zebrafish DNA sequence from clone CH211-152F6 i... 42 1.3
22emb|BX950197.23| Zebrafish DNA sequence from clone CH211-123N8 i... 42 1.3
23gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 1.3
24ref|NM_100618.3| Arabidopsis thaliana oxidoreductase AT1G07440 t... 40 4.9
25ref|NM_001035910.1| Arabidopsis thaliana oxidoreductase AT1G0744... 40 4.9
26ref|NM_123620.2| Arabidopsis thaliana unknown protein AT5G42560 ... 40 4.9
27gb|AC153878.11| Mus musculus 6 BAC RP23-229B22 (Roswell Park Can... 40 4.9
28gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome... 40 4.9
29gb|BT025253.1| Arabidopsis thaliana At5g42560 mRNA, complete cds 40 4.9
30ref|NM_001030395.1| Xenopus tropicalis dlx3 protein (dlx3), mRNA 40 4.9
31gb|BC090605.1| Xenopus tropicalis dlx3 protein, mRNA (cDNA clone... 40 4.9
32gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hosp... 40 4.9
33emb|AL009192.1|DMC133E12 Drosophila melanogaster cosmid clone 13... 40 4.9
34gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell P... 40 4.9
35gb|AF361621.1| Arabidopsis thaliana At1g07440/F22G5_16 mRNA, com... 40 4.9
36gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell... 40 4.9
37gb|AY055094.1| Arabidopsis thaliana At1g07440/F22G5_16 mRNA, com... 40 4.9
38dbj|AK036397.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 4.9
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
40emb|BX813921.1|CNS0AE3Y Arabidopsis thaliana Full-length cDNA Co... 40 4.9
41dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 4.9
42emb|BX832901.1|CNS09YRT Arabidopsis thaliana Full-length cDNA Co... 40 4.9
43gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana... 40 4.9
44gb|AY085687.1| Arabidopsis thaliana clone 17101 mRNA, complete s... 40 4.9
45dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
46dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
47dbj|AB022210.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.9
48emb|CR942714.2| Xenopus tropicalis finished cDNA, clone TNeu022o06 40 4.9
49gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 o... 40 4.9
50gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, co... 40 4.9
51gb|AY091089.1| Arabidopsis thaliana At5g42560 mRNA sequence 40 4.9
52emb|AL671935.30| Mouse DNA sequence from clone RP23-421J13 on ch... 40 4.9
53emb|CT485608.3| Mouse DNA sequence from clone RP23-427F9 on chro... 40 4.9
54gb|AC153922.6| Mus musculus 6 BAC RP23-81P16 (Roswell Park Cance... 40 4.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                           
Query: 174     ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
               ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 8917716 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 8917775

                                                                           
Query: 234     cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
                |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 8917776 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 8917835

                       
Query: 294     ggagttcg 301
               ||||||||
Sbjct: 8917836 ggagttcg 8917843



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                           
Query: 152     ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
               ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 8922623 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 8922682

                                                                           
Query: 212     gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
               ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 8922683 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 8922742

                           
Query: 272     aggttctcccac 283
                |||||||||||
Sbjct: 8922743 tggttctcccac 8922754
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>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
              complete sequence
          Length = 126027

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                          
Query: 174    ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
              ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 108604 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 108663

                                                                          
Query: 234    cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
               |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 108664 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 108723

                      
Query: 294    ggagttcg 301
              ||||||||
Sbjct: 108724 ggagttcg 108731



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                          
Query: 152    ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
              ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 113511 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 113570

                                                                          
Query: 212    gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
              ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 113571 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 113630

                          
Query: 272    aggttctcccac 283
               |||||||||||
Sbjct: 113631 tggttctcccac 113642
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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0071M09, complete sequence
          Length = 143595

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                         
Query: 174   ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
             ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 42577 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 42636

                                                                         
Query: 234   cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
              |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 42637 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 42696

                     
Query: 294   ggagttcg 301
             ||||||||
Sbjct: 42697 ggagttcg 42704



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                         
Query: 152   ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
             ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 47484 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 47543

                                                                         
Query: 212   gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
             ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 47544 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 47603

                         
Query: 272   aggttctcccac 283
              |||||||||||
Sbjct: 47604 tggttctcccac 47615
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                           
Query: 174     ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
               ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 8915551 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 8915610

                                                                           
Query: 234     cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
                |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 8915611 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 8915670

                       
Query: 294     ggagttcg 301
               ||||||||
Sbjct: 8915671 ggagttcg 8915678



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                           
Query: 152     ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
               ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 8920458 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 8920517

                                                                           
Query: 212     gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
               ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 8920518 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 8920577

                           
Query: 272     aggttctcccac 283
                |||||||||||
Sbjct: 8920578 tggttctcccac 8920589
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>dbj|AK098913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I11, full
           insert sequence
          Length = 937

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                       
Query: 174 ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
           ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 786 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 727

                                                                       
Query: 234 cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
            |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 726 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 667

                   
Query: 294 ggagttcg 301
           ||||||||
Sbjct: 666 ggagttcg 659
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>dbj|AK062166.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B08, full
           insert sequence
          Length = 1007

 Score =  127 bits (64), Expect = 3e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                       
Query: 174 ccatttatggtcatgccgccatcaaccgagatcgtctggccagtgatgtaagatgaaccg 233
           ||||| |||||||| || |||||||||||||||||||||||||| ||||||   ||||| 
Sbjct: 853 ccattaatggtcatacctccatcaaccgagatcgtctggccagtaatgtaactggaacca 794

                                                                       
Query: 234 cgcatacagagaaatgccaccagcgatgatacttcttcaggttctcccacacgcctcatt 293
            |||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
Sbjct: 793 ggcatgcaaagaaaagcaaccagcgatgatacttcttcaggttctccaacacgcctaagt 734

                   
Query: 294 ggagttcg 301
           ||||||||
Sbjct: 733 ggagttcg 726
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>ref|NM_187487.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 927

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 152 ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
           ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 927 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 868

                                                                       
Query: 212 gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
           ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 867 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 808

                       
Query: 272 aggttctcccac 283
            |||||||||||
Sbjct: 807 tggttctcccac 796
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>dbj|AK069762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027K22, full
           insert sequence
          Length = 1272

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 152 ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
           ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 961 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 902

                                                                       
Query: 212 gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
           ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 901 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 842

                       
Query: 272 aggttctcccac 283
            |||||||||||
Sbjct: 841 tggttctcccac 830
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>dbj|AK058655.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F07, full
           insert sequence
          Length = 1166

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Minus

                                                                       
Query: 152 ctagttctcagtcggatacatgccatttatggtcatgccgccatcaaccgagatcgtctg 211
           ||||| || ||| |||||||  || ||||||||||||||||| || ||||||||||||||
Sbjct: 843 ctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctg 784

                                                                       
Query: 212 gccagtgatgtaagatgaaccgcgcatacagagaaatgccaccagcgatgatacttcttc 271
           ||| |||||||| || |  ||| |||| || || || || ||||||||||| || |||||
Sbjct: 783 gccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttc 724

                       
Query: 272 aggttctcccac 283
            |||||||||||
Sbjct: 723 tggttctcccac 712
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>emb|AL935282.14| Zebrafish DNA sequence from clone CH211-281O21 in linkage group 2,
             complete sequence
          Length = 173134

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 99    tatttaaatatagctacaggacaca 123
             |||||||||||||||||||||||||
Sbjct: 15270 tatttaaatatagctacaggacaca 15246
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>ref|NM_128490.2| Arabidopsis thaliana oxidoreductase AT2G29360 mRNA, complete cds
          Length = 954

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 243 agaaatgccaccagcgatgatacttc 268
           ||||||||||| ||||||||||||||
Sbjct: 746 agaaatgccacaagcgatgatacttc 721
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>ref|NM_128472.1| Arabidopsis thaliana oxidoreductase AT2G29150 mRNA, complete cds
          Length = 807

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 239 acagagaaatgccaccagcgatgatacttc 268
           |||||||||||| || ||||||||||||||
Sbjct: 723 acagagaaatgcgacaagcgatgatacttc 694
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>gb|DQ056552.1| Arabidopsis thaliana putative tropinone reductase/tropine
           dehydrogenase (At2g29150) mRNA, complete cds
          Length = 807

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 239 acagagaaatgccaccagcgatgatacttc 268
           |||||||||||| || ||||||||||||||
Sbjct: 723 acagagaaatgcgacaagcgatgatacttc 694
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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
              sequence
          Length = 131743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 239    acagagaaatgccaccagcgatgatacttc 268
              |||||||||||| || ||||||||||||||
Sbjct: 123939 acagagaaatgcgacaagcgatgatacttc 123910



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 243   agaaatgccaccagcgatgatacttc 268
             ||||||||||| ||||||||||||||
Sbjct: 54711 agaaatgccacaagcgatgatacttc 54736



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 240    cagagaaatgccaccagcgatgatacttc 268
              ||||||||||| || ||||||||||||||
Sbjct: 120957 cagagaaatgcgacaagcgatgatacttc 120929
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>gb|AY090333.1| Arabidopsis thaliana At2g29360/F16P2.26 mRNA, complete cds
          Length = 816

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 243 agaaatgccaccagcgatgatacttc 268
           ||||||||||| ||||||||||||||
Sbjct: 722 agaaatgccacaagcgatgatacttc 697
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>gb|AY045613.1| Arabidopsis thaliana At2g29360/F16P2.26 mRNA, complete cds
          Length = 958

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 243 agaaatgccaccagcgatgatacttc 268
           ||||||||||| ||||||||||||||
Sbjct: 749 agaaatgccacaagcgatgatacttc 724
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>gb|AY086609.1| Arabidopsis thaliana clone 2618 mRNA, complete sequence
          Length = 938

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 243 agaaatgccaccagcgatgatacttc 268
           ||||||||||| ||||||||||||||
Sbjct: 732 agaaatgccacaagcgatgatacttc 707
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>emb|CR846084.6| Zebrafish DNA sequence from clone DKEYP-121E7 in linkage group 3,
             complete sequence
          Length = 77230

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   acacataattccaacagaact 139
             |||||||||||||||||||||
Sbjct: 70207 acacataattccaacagaact 70227
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>emb|BX897743.8| Zebrafish DNA sequence from clone CH211-164N21 in linkage group 10,
             complete sequence
          Length = 112314

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   atttaaatatagctacaggac 120
             |||||||||||||||||||||
Sbjct: 98272 atttaaatatagctacaggac 98292
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>gb|AE008753.1| Salmonella typhimurium LT2, section 57 of 220 of the complete genome
          Length = 22182

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   tgccatttatggtcatgccgc 192
             |||||||||||||||||||||
Sbjct: 14284 tgccatttatggtcatgccgc 14264
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>emb|BX936308.13| Zebrafish DNA sequence from clone CH211-152F6 in linkage group 3,
             complete sequence
          Length = 110020

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   acacataattccaacagaact 139
             |||||||||||||||||||||
Sbjct: 61990 acacataattccaacagaact 62010
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>emb|BX950197.23| Zebrafish DNA sequence from clone CH211-123N8 in linkage group 10,
             complete sequence
          Length = 155683

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   atttaaatatagctacaggac 120
             |||||||||||||||||||||
Sbjct: 56612 atttaaatatagctacaggac 56632
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     tgccatttatggtcatgccgc 192
               |||||||||||||||||||||
Sbjct: 1292926 tgccatttatggtcatgccgc 1292906
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>ref|NM_100618.3| Arabidopsis thaliana oxidoreductase AT1G07440 transcript variant
           AT1G07440.1 mRNA, complete cds
          Length = 961

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 235 gcatacagagaaatgccaccagcgatgatacttcttcagg 274
           ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 738 gcatacatagaaaagccacaagcgaggacacttcttcagg 699
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>ref|NM_001035910.1| Arabidopsis thaliana oxidoreductase AT1G07440 transcript variant
           AT1G07440.2 mRNA, complete cds
          Length = 1240

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 235 gcatacagagaaatgccaccagcgatgatacttcttcagg 274
           ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 867 gcatacatagaaaagccacaagcgaggacacttcttcagg 828
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>ref|NM_123620.2| Arabidopsis thaliana unknown protein AT5G42560 mRNA, complete cds
          Length = 1121

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 atgatacttcttcaggttct 278
           ||||||||||||||||||||
Sbjct: 734 atgatacttcttcaggttct 715
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>gb|AC153878.11| Mus musculus 6 BAC RP23-229B22 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 185647

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   aatttctattatttaaatat 109
            ||||||||||||||||||||
Sbjct: 8176 aatttctattatttaaatat 8195
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>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence
          Length = 197161

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      taataattccatgataatca 26
              ||||||||||||||||||||
Sbjct: 129810 taataattccatgataatca 129791
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>gb|BT025253.1| Arabidopsis thaliana At5g42560 mRNA, complete cds
          Length = 891

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 atgatacttcttcaggttct 278
           ||||||||||||||||||||
Sbjct: 544 atgatacttcttcaggttct 525
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>ref|NM_001030395.1| Xenopus tropicalis dlx3 protein (dlx3), mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   tctattatttaaatatagct 113
            ||||||||||||||||||||
Sbjct: 1371 tctattatttaaatatagct 1352
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>gb|BC090605.1| Xenopus tropicalis dlx3 protein, mRNA (cDNA clone MGC:69301
            IMAGE:5308608), complete cds
          Length = 1854

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   tctattatttaaatatagct 113
            ||||||||||||||||||||
Sbjct: 1371 tctattatttaaatatagct 1352
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>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    catacagagaaatgccacca 255
              ||||||||||||||||||||
Sbjct: 198333 catacagagaaatgccacca 198352
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>emb|AL009192.1|DMC133E12 Drosophila melanogaster cosmid clone 133E12
          Length = 32000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   cgtctggccagtgatgtaag 225
             ||||||||||||||||||||
Sbjct: 26775 cgtctggccagtgatgtaag 26756
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>gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169618

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cgtctggccagtgatgtaag 225
              ||||||||||||||||||||
Sbjct: 135483 cgtctggccagtgatgtaag 135464
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>gb|AF361621.1| Arabidopsis thaliana At1g07440/F22G5_16 mRNA, complete cds
          Length = 935

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 235 gcatacagagaaatgccaccagcgatgatacttcttcagg 274
           ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 725 gcatacatagaaaagccacaagcgaggacacttcttcagg 686
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>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 177724

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  cgtctggccagtgatgtaag 225
            ||||||||||||||||||||
Sbjct: 1908 cgtctggccagtgatgtaag 1889
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>gb|AY055094.1| Arabidopsis thaliana At1g07440/F22G5_16 mRNA, complete cds
          Length = 801

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 235 gcatacagagaaatgccaccagcgatgatacttcttcagg 274
           ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 715 gcatacatagaaaagccacaagcgaggacacttcttcagg 676
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>dbj|AK036397.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830005E11 product:unclassifiable, full
            insert sequence
          Length = 4779

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    taataattccatgataatca 26
            ||||||||||||||||||||
Sbjct: 4357 taataattccatgataatca 4376
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 175      catttatggtcatgccgccatcaa 198
                |||||||| |||||||||||||||
Sbjct: 11588093 catttatgctcatgccgccatcaa 11588116
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>emb|BX813921.1|CNS0AE3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB48ZA07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 499

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 235 gcatacagagaaatgccaccagcgatgatacttcttcagg 274
           ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 286 gcatacatagaaaagccacaagcgaggacacttcttcagg 247
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 4       aagtaataattccatgataa 23
               ||||||||||||||||||||
Sbjct: 1042324 aagtaataattccatgataa 1042343
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>emb|BX832901.1|CNS09YRT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL20ZG01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1188

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 atgatacttcttcaggttct 278
           ||||||||||||||||||||
Sbjct: 713 atgatacttcttcaggttct 694
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>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
             complete sequence
          Length = 104830

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 235   gcatacagagaaatgccaccagcgatgatacttcttcagg 274
             ||||||| ||||| ||||| ||||| || |||||||||||
Sbjct: 57539 gcatacatagaaaagccacaagcgaggacacttcttcagg 57500
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>gb|AY085687.1| Arabidopsis thaliana clone 17101 mRNA, complete sequence
          Length = 1364

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 atgatacttcttcaggttct 278
           ||||||||||||||||||||
Sbjct: 734 atgatacttcttcaggttct 715
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>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1034_C08
          Length = 154441

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 175    catttatggtcatgccgccatcaa 198
              |||||||| |||||||||||||||
Sbjct: 142227 catttatgctcatgccgccatcaa 142250
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>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   catttatggtcatgccgccatcaa 198
             |||||||| |||||||||||||||
Sbjct: 48364 catttatgctcatgccgccatcaa 48387
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>dbj|AB022210.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E1
          Length = 33963

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  atgatacttcttcaggttct 278
            ||||||||||||||||||||
Sbjct: 9613 atgatacttcttcaggttct 9594
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>emb|CR942714.2| Xenopus tropicalis finished cDNA, clone TNeu022o06
          Length = 1860

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   tctattatttaaatatagct 113
            ||||||||||||||||||||
Sbjct: 1400 tctattatttaaatatagct 1381
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>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete
              sequence
          Length = 300933

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cgtctggccagtgatgtaag 225
              ||||||||||||||||||||
Sbjct: 262460 cgtctggccagtgatgtaag 262441
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>gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, complete sequence
          Length = 206811

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    atttctattatttaaatata 110
             ||||||||||||||||||||
Sbjct: 71264 atttctattatttaaatata 71245
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>gb|AY091089.1| Arabidopsis thaliana At5g42560 mRNA sequence
          Length = 1249

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 atgatacttcttcaggttct 278
           ||||||||||||||||||||
Sbjct: 725 atgatacttcttcaggttct 706
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>emb|AL671935.30| Mouse DNA sequence from clone RP23-421J13 on chromosome X, complete
              sequence
          Length = 194258

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ataattccaacagaactttc 142
              ||||||||||||||||||||
Sbjct: 110320 ataattccaacagaactttc 110339
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>emb|CT485608.3| Mouse DNA sequence from clone RP23-427F9 on chromosome 14, complete
             sequence
          Length = 182099

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     taataattccatgataatca 26
             ||||||||||||||||||||
Sbjct: 94481 taataattccatgataatca 94462
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>gb|AC153922.6| Mus musculus 6 BAC RP23-81P16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 234722

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aatttctattatttaaatat 109
             ||||||||||||||||||||
Sbjct: 95164 aatttctattatttaaatat 95183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,570
Number of Sequences: 3902068
Number of extensions: 3083570
Number of successful extensions: 61035
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60859
Number of HSP's gapped (non-prelim): 169
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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