ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast35c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FA21C_HUMAN (Q9Y4E1) Protein FAM21C 31 0.88
2AB140_YEAST (Q08641) Actin-binding protein ABP140 29 3.4
3CATF_MOUSE (Q9R013) Cathepsin F precursor (EC 3.4.22.41) 28 4.4
4CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor) 28 4.4
5EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimul... 28 5.7
6EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimul... 28 5.7
7BCAR3_MOUSE (Q9QZK2) Breast cancer anti-estrogen resistance prot... 28 5.7
8CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ... 28 5.7
9CATF_HUMAN (Q9UBX1) Cathepsin F precursor (EC 3.4.22.41) (CATSF) 28 5.7
10TPR1_SCHPO (O42668) Tetratricopeptide repeat protein 1 28 7.5
11POP1_YEAST (P41812) Ribonucleases P/MRP protein subunit POP1 (EC... 28 7.5
12GCP5_HUMAN (Q96RT8) Gamma-tubulin complex component 5 (GCP-5) 28 7.5
13GCP2_HUMAN (Q9BSJ2) Gamma-tubulin complex component 2 (GCP-2) (S... 28 7.5
14JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem... 27 9.8
15JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem... 27 9.8
16BCAR3_MACFA (Q4R8R1) Breast cancer anti-estrogen resistance prot... 27 9.8

>FA21C_HUMAN (Q9Y4E1) Protein FAM21C|
          Length = 1320

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 85  EKKLYGKQLDSTDLVSYKRASNLRGASII 171
           +K L+  + DS DL S + ASNL+GAS++
Sbjct: 534 QKGLFSDEEDSEDLFSSQSASNLKGASLL 562



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>AB140_YEAST (Q08641) Actin-binding protein ABP140|
          Length = 627

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 52  DKEQKDQTKLWEKKLYGK----QLDSTDLVSYKRASNLRGASIIRHI*ERDPGEESNSQE 219
           ++E +++  + E K+Y K     ++  D   YK   N     +   + E D  +E  ++E
Sbjct: 84  NEEDEEEGSMSENKIYSKGENADINVNDFQEYKEMENTGAEVLASSVEESDAIQEGVAEE 143

Query: 220 ARRSSLPKELRN 255
               + PK+  N
Sbjct: 144 TEGIATPKQKEN 155



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>CATF_MOUSE (Q9R013) Cathepsin F precursor (EC 3.4.22.41)|
          Length = 462

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 GRVKFAGSETVLSSEGTQESPPC 266
           GRV+ AG  ++ S E T E PPC
Sbjct: 69  GRVRRAGQGSLFSLEATLEEPPC 91



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>CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor)|
          Length = 681

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 313 ANARRQRSRSIFPRWKQGGDS*VPSEERTV 224
           ++ RR+RS  I P W  G     PSEE  +
Sbjct: 626 SSGRRERSGGIVPEWSPGYSEQFPSEENRI 655



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>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated|
           phosphoprotein-like)
          Length = 416

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 206 QIRRKRDGPLFRRNSGISTLLPPGEDGSRPLSPCICWPP 322
           Q +++R   L RR S    +LPPG   S   +P  C  P
Sbjct: 144 QHQQQRQESLERRTSATGPILPPGHPSSAASAPVSCSGP 182



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>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated|
           phosphoprotein-like)
          Length = 422

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 206 QIRRKRDGPLFRRNSGISTLLPPGEDGSRPLSPCICWPP 322
           Q +++R   L RR S    +LPPG   S   +P  C  P
Sbjct: 150 QHQQQRQESLERRTSATGPILPPGHPSSAASAPVSCSGP 188



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>BCAR3_MOUSE (Q9QZK2) Breast cancer anti-estrogen resistance protein 3|
           (p130Cas-binding protein AND-34)
          Length = 820

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 218 KRDGPLFRRNSGISTLLPPGEDGSRPLSPCICWPPFAV 331
           K++GP   RNSGI+ ++  G+D +R       W P AV
Sbjct: 456 KQNGPSGPRNSGINYMILDGDDQARH------WDPLAV 487



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>CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ras 1|
           (Connector enhancer of KSR1) (hCNK1) (Connector enhancer
           of KSR-like) (CNK homolog protein 1)
          Length = 720

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 189 GSWGRVKFAGSETVLSSEGTQESP 260
           G+WG  +  GS  +L+S+ T++SP
Sbjct: 670 GAWGVAQAEGSSHILTSDSTEQSP 693



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>CATF_HUMAN (Q9UBX1) Cathepsin F precursor (EC 3.4.22.41) (CATSF)|
          Length = 484

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 GRVKFAGSETVLSSEGTQESPPC 266
           GRV+ AG  ++ S E T E PPC
Sbjct: 67  GRVRRAGQGSLYSLEATLEEPPC 89



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>TPR1_SCHPO (O42668) Tetratricopeptide repeat protein 1|
          Length = 1039

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
 Frame = +1

Query: 1   LQHWHAHSYTLL----AVTFQDKE---QKDQTKLWEKKLYGKQLDSTDLV---SYKRASN 150
           L+HWH   Y+L+    A   Q +E     D+ KL  +KLY K + S D       K A  
Sbjct: 611 LRHWHDDIYSLVQLGNAYMRQAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNAHA 670

Query: 151 LRGASII 171
            +G +II
Sbjct: 671 AQGIAII 677



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>POP1_YEAST (P41812) Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)|
           (RNases P/MRP 100.4 kDa subunit) (RNA-processing protein
           POP1)
          Length = 875

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 167 SSGISEKGILGK-----SQIRRKRDGPLFRRNSGISTLLPPGEDGSRPLSPC 307
           S G   K I+GK     + +R+ R+G +  +    S     GED ++PL PC
Sbjct: 305 SEGDFLKSIIGKLTAERANLRKYREGQVLFQGLIYSFNEENGEDSTKPLGPC 356



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>GCP5_HUMAN (Q96RT8) Gamma-tubulin complex component 5 (GCP-5)|
          Length = 1024

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 230 PLFRRNSGISTLLPPGE--DGSRPLSPCICW 316
           PL R +SGI     P E  D +R L PCI W
Sbjct: 176 PLSREDSGIQVDRTPLEEQDQNRKLDPCISW 206



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>GCP2_HUMAN (Q9BSJ2) Gamma-tubulin complex component 2 (GCP-2) (Spindle pole|
           body protein Spc97 homolog) (hSpc97) (hGCP2) (h103p)
          Length = 902

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 50  KIKNRKIKQNYGKKNSTENN*TLPIWYLTRGHLIYEGQVSSGIS 181
           ++K + ++    KKNS ++    P W   R  LI +  + +GIS
Sbjct: 155 ELKRKMLRDKQNKKNSGQHLPIFPAWVYERPALIGDFLIGAGIS 198



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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 304 RRQRSRSIFPRWKQGGDS*VPSEER 230
           ++Q+ RSI P  ++G DS +P EE+
Sbjct: 120 QQQQQRSIRPNKRKGSDSSIPDEEK 144



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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C) (Thyroid receptor-interacting protein 8)
           (TRIP-8)
          Length = 2540

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 304 RRQRSRSIFPRWKQGGDS*VPSEER 230
           ++Q+ RSI P  ++G DS +P EE+
Sbjct: 302 QQQQQRSIRPNKRKGSDSSIPDEEK 326



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>BCAR3_MACFA (Q4R8R1) Breast cancer anti-estrogen resistance protein 3|
          Length = 825

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 KRDGPLFRRNSGISTLLPPGEDGSRPLSP 304
           K++G L  RNSGI+ L+   +D  RP  P
Sbjct: 461 KQNGALGPRNSGINYLILDDDDRERPWEP 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,120,713
Number of Sequences: 219361
Number of extensions: 959737
Number of successful extensions: 3142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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