| Clone Name | rbast34h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1755 Score = 165 bits (83), Expect = 1e-37 Identities = 140/159 (88%) Strand = Plus / Minus Query: 182 acttccaagaaaatcctacaaagtcaggctctcagggtcctcgataattttcgcaaaagt 241 ||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || |||||||| Sbjct: 1532 acttccaaggaaatcttacaaagttaagctctcaggatcctcaataatctttgcaaaagt 1473 Query: 242 ttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtgacgttgac 301 ||||||||||||||||| ||||||||| || ||||| | ||||||||| ||||| || || Sbjct: 1472 ttgcaggaatgctgccagatcagcaccgtatacaattctgtgatcagcagtgacattaac 1413 Query: 302 cagcattttgttctgaacactaaagaaaccatctttatc 340 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 1412 cagcattttgctcttgacactaaagaaaccatctttatc 1374
>dbj|AK070015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040H11, full insert sequence Length = 1754 Score = 165 bits (83), Expect = 1e-37 Identities = 140/159 (88%) Strand = Plus / Minus Query: 182 acttccaagaaaatcctacaaagtcaggctctcagggtcctcgataattttcgcaaaagt 241 ||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || |||||||| Sbjct: 1531 acttccaaggaaatcttacaaagttaagctctcaggatcctcaataatctttgcaaaagt 1472 Query: 242 ttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtgacgttgac 301 ||||||||||||||||| ||||||||| || ||||| | ||||||||| ||||| || || Sbjct: 1471 ttgcaggaatgctgccagatcagcaccgtatacaattctgtgatcagcagtgacattaac 1412 Query: 302 cagcattttgttctgaacactaaagaaaccatctttatc 340 |||||||||| ||| ||||||||||||||||||||||| Sbjct: 1411 cagcattttgctcttgacactaaagaaaccatctttatc 1373
>gb|AY111087.1| Zea mays CL10585_1 mRNA sequence Length = 891 Score = 149 bits (75), Expect = 7e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 198 tacaaagtcaggctctcagggtcctcgataattttcgcaaaagtttgcaggaatgctgcc 257 |||||||| | ||||||||| ||||| ||||| || ||||||||||| || ||||||||| Sbjct: 248 tacaaagttaagctctcaggatcctcaataatctttgcaaaagtttgtagaaatgctgcc 307 Query: 258 aaatcagcaccatacacaatccggtgatcagctgtgacgttgaccagcattttgttctga 317 ||||||||||| || ||||||| ||||||||| ||||| ||||||||||||||| ||| Sbjct: 308 aaatcagcaccgtatacaatcctgtgatcagcagtgacattgaccagcattttgctcttg 367 Query: 318 acactaaagaaaccatctttatc 340 || |||||||||||||||||||| Sbjct: 368 acgctaaagaaaccatctttatc 390
>dbj|AK060606.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B10, full insert sequence Length = 1752 Score = 123 bits (62), Expect = 4e-25 Identities = 122/142 (85%) Strand = Plus / Minus Query: 196 cctacaaagtcaggctctcagggtcctcgataattttcgcaaaagtttgcaggaatgctg 255 ||||||| || ||||||||||| ||||| || || |||||||| || ||||||||||||| Sbjct: 1574 cctacaatgttaggctctcaggatcctcaatgatcttcgcaaatgtctgcaggaatgctg 1515 Query: 256 ccaaatcagcaccatacacaatccggtgatcagctgtgacgttgaccagcattttgttct 315 |||||||||||||||| | ||||| ||| ||||| || || ||||||||||||| ||||| Sbjct: 1514 ccaaatcagcaccatatataatcctgtggtcagcagtaacattgaccagcatttcgttct 1455 Query: 316 gaacactaaagaaaccatcttt 337 | ||||||||||||||||| Sbjct: 1454 tgatgctaaagaaaccatcttt 1433
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 115 bits (58), Expect = 1e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 182 acttccaagaaaatcctacaaagtcaggctctcagggtcctcgataattttcgcaaaagt 241 ||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || |||||||| Sbjct: 20851813 acttccaaggaaatcttacaaagttaagctctcaggatcctcaataatctttgcaaaagt 20851872 Query: 242 ttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtgac 295 ||||||||||||||||| ||||||||| || ||||| | ||||||||| ||||| Sbjct: 20851873 ttgcaggaatgctgccagatcagcaccgtatacaattctgtgatcagcagtgac 20851926 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 300 accagcattttgttctgaacactaaagaaaccatctttatc 340 |||||||||||| ||| ||||||||||||||||||||||| Sbjct: 20853229 accagcattttgctcttgacactaaagaaaccatctttatc 20853269 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 atttatttccaaaatttcataaca 24 ||||||||||||||||| |||||| Sbjct: 7452784 atttatttccaaaatttgataaca 7452761
>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_B08 Length = 131184 Score = 115 bits (58), Expect = 1e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 182 acttccaagaaaatcctacaaagtcaggctctcagggtcctcgataattttcgcaaaagt 241 ||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || |||||||| Sbjct: 30114 acttccaaggaaatcttacaaagttaagctctcaggatcctcaataatctttgcaaaagt 30173 Query: 242 ttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtgac 295 ||||||||||||||||| ||||||||| || ||||| | ||||||||| ||||| Sbjct: 30174 ttgcaggaatgctgccagatcagcaccgtatacaattctgtgatcagcagtgac 30227 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 300 accagcattttgttctgaacactaaagaaaccatctttatc 340 |||||||||||| ||| ||||||||||||||||||||||| Sbjct: 31530 accagcattttgctcttgacactaaagaaaccatctttatc 31570
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 115 bits (58), Expect = 1e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 182 acttccaagaaaatcctacaaagtcaggctctcagggtcctcgataattttcgcaaaagt 241 ||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || |||||||| Sbjct: 82946 acttccaaggaaatcttacaaagttaagctctcaggatcctcaataatctttgcaaaagt 83005 Query: 242 ttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtgac 295 ||||||||||||||||| ||||||||| || ||||| | ||||||||| ||||| Sbjct: 83006 ttgcaggaatgctgccagatcagcaccgtatacaattctgtgatcagcagtgac 83059 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 300 accagcattttgttctgaacactaaagaaaccatctttatc 340 |||||||||||| ||| ||||||||||||||||||||||| Sbjct: 84362 accagcattttgctcttgacactaaagaaaccatctttatc 84402
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 93.7 bits (47), Expect = 3e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 196 cctacaaagtcaggctctcagggtcctcgataattttcgcaaaagtttgcaggaatgctg 255 ||||||| || ||||||||||| ||||| || || |||||||| || ||||||||||||| Sbjct: 14400292 cctacaatgttaggctctcaggatcctcaatgatcttcgcaaatgtctgcaggaatgctg 14400351 Query: 256 ccaaatcagcaccatacacaatccggtgatcagctgtgacgttgacc 302 |||||||||||||||| | ||||| ||| ||||| || || |||||| Sbjct: 14400352 ccaaatcagcaccatatataatcctgtggtcagcagtaacattgacc 14400398
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 93.7 bits (47), Expect = 3e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 196 cctacaaagtcaggctctcagggtcctcgataattttcgcaaaagtttgcaggaatgctg 255 ||||||| || ||||||||||| ||||| || || |||||||| || ||||||||||||| Sbjct: 92095 cctacaatgttaggctctcaggatcctcaatgatcttcgcaaatgtctgcaggaatgctg 92154 Query: 256 ccaaatcagcaccatacacaatccggtgatcagctgtgacgttgacc 302 |||||||||||||||| | ||||| ||| ||||| || || |||||| Sbjct: 92155 ccaaatcagcaccatatataatcctgtggtcagcagtaacattgacc 92201
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 198 tacaaagtcaggctctcagggtcctcgataattttcgcaaaagtttgcaggaatgctgcc 257 ||||| || ||||| ||||| ||||| | ||| || ||||| |||||||||||||||||| Sbjct: 86434 tacaatgtgaggctttcaggatcctcaacaatctttgcaaatgtttgcaggaatgctgcc 86375 Query: 258 aaatcagcaccatacacaatccggtgatcagc 289 |||||||||||||| | ||||| ||||||||| Sbjct: 86374 aaatcagcaccatagataatcctgtgatcagc 86343
>ref|NM_113489.2| Arabidopsis thaliana LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein bi> AT3G25860 (LTA2) mRNA, complete cds Length = 1717 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1478 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1419 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1418 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1372
>gb|AY045935.1| Arabidopsis thaliana putative dihydrolipoamide S-acetyltransferase (At3g25860) mRNA, partial cds Length = 1338 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1073 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1014 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1013 acattcaccagcattgtgttttttacactgaagaatccatccttatc 967
>gb|AY037262.1| Arabidopsis thaliana AT3g25860/MPE11_1 mRNA, complete cds Length = 1710 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1478 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1419 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1418 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1372
>emb|BX823568.1|CNS0A5BH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1663 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1462 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1403 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1402 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1356
>emb|BX822783.1|CNS0A4PC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZA03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1660 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1464 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1405 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1404 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1358
>gb|BT002343.1| Arabidopsis thaliana clone C104935 putative dihydrolipoamide S-acetyltransferase (At3g25860) mRNA, complete cds Length = 1474 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1406 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1347 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1346 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1300
>gb|AF066079.1|AF066079 Arabidopsis thaliana dihydrolipoamide S-acetyltransferase (LTA2) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1714 Score = 46.1 bits (23), Expect = 0.073 Identities = 86/107 (80%) Strand = Plus / Minus Query: 234 gcaaaagtttgcaggaatgctgccaaatcagcaccatacacaatccggtgatcagctgtg 293 ||||| ||||| || || || ||||| ||||| ||||||||||| || ||||| || || Sbjct: 1464 gcaaaggtttggagaaaagcagccaagtcagctccatacacaatgcgatgatctgcagtc 1405 Query: 294 acgttgaccagcattttgttctgaacactaaagaaaccatctttatc 340 || || ||||||||| |||| | ||||| ||||| ||||| ||||| Sbjct: 1404 acattcaccagcattgtgttttttacactgaagaatccatccttatc 1358
>gb|AE014825.1| Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence Length = 250053 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 atttatttccaaaatttcataa 22 |||||||||||||||||||||| Sbjct: 102067 atttatttccaaaatttcataa 102088
>ref|XM_721148.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05738) partial mRNA Length = 1950 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 117 aaaaggaaaaccaaaaacaaactcaa 142 ||||||||||||||||||||| |||| Sbjct: 698 aaaaggaaaaccaaaaacaaaatcaa 723
>gb|AC093155.2| Homo sapiens chromosome 1 clone RP11-384B12, complete sequence Length = 189760 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Minus Query: 108 aaagatacaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||| ||||||||| Sbjct: 130619 aaagatacaaaaaagaaaacaaaaaacaaa 130590
>gb|AC073172.5| Homo sapiens chromosome 11, clone RP11-531H8, complete sequence Length = 168080 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 108 aaagatacaaaaaggaaaaccaaaaa 133 ||||||||||||| |||||||||||| Sbjct: 78181 aaagatacaaaaaagaaaaccaaaaa 78156
>gb|AC099016.1| Drosophila melanogaster, chromosome 2R, region 56A-56A, BAC clone BACR27C21, complete sequence Length = 173373 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 13 aatttcataacatcataaccaatttc 38 ||||||||||||||| |||||||||| Sbjct: 115020 aatttcataacatcaaaaccaatttc 114995
>dbj|AB120598.1| Cyprinus carpio TCRalpha mRNA, unproductive transcript, clone:Cpl48 Length = 690 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 ggaaatgaactggtggttgaat 180 |||||||||||||||||||||| Sbjct: 207 ggaaatgaactggtggttgaat 186
>gb|AC153858.3| Mus musculus 10 BAC RP23-139H21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198030 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 aaaaggaaaaccaaaaacaaac 138 |||||||||||||||||||||| Sbjct: 117274 aaaaggaaaaccaaaaacaaac 117253
>gb|AE003797.3| Drosophila melanogaster chromosome 2R, section 53 of 73 of the complete sequence Length = 306854 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 13 aatttcataacatcataaccaatttc 38 ||||||||||||||| |||||||||| Sbjct: 13679 aatttcataacatcaaaaccaatttc 13654
>emb|AL672226.30| Mouse DNA sequence from clone RP23-413H14 on chromosome X, complete sequence Length = 114117 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 atttatttccaaaatttcataa 22 |||||||||||||||||||||| Sbjct: 60789 atttatttccaaaatttcataa 60810
>gb|AC004298.1|AC004298 Drosophila melanogaster DNA sequence (P1 DS02599 (D184)), complete sequence Length = 81522 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 13 aatttcataacatcataaccaatttc 38 ||||||||||||||| |||||||||| Sbjct: 13501 aatttcataacatcaaaaccaatttc 13526
>gb|AC121845.3| Mus musculus BAC clone RP24-82B23 from 5, complete sequence Length = 217530 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 aaaaggaaaaccaaaaacaaac 138 |||||||||||||||||||||| Sbjct: 93194 aaaaggaaaaccaaaaacaaac 93215
>ref|XM_458971.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D12694g) partial mRNA Length = 1371 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 aaccaaaaacaaactcaacga 145 ||||||||||||||||||||| Sbjct: 144 aaccaaaaacaaactcaacga 124
>gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, complete sequence Length = 213077 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 ttgcaggaatgctgccaaatc 262 ||||||||||||||||||||| Sbjct: 201267 ttgcaggaatgctgccaaatc 201287
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 aaccaaaaacaaactcaacga 145 ||||||||||||||||||||| Sbjct: 961960 aaccaaaaacaaactcaacga 961940
>gb|AC094105.3| Homo sapiens chromosome 5 clone RP11-468D11, complete sequence Length = 186314 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atttatttccaaaatttcata 21 ||||||||||||||||||||| Sbjct: 49566 atttatttccaaaatttcata 49546
>gb|AC096916.2| Homo sapiens chromosome 3 clone RP11-92I24, complete sequence Length = 163539 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 ttgcaggaatgctgccaaatc 262 ||||||||||||||||||||| Sbjct: 66038 ttgcaggaatgctgccaaatc 66058
>gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosome 18, complete sequence Length = 197898 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 109 aagatacaaaaaggaaaaccaaaaacaaa 137 ||||| ||||||||||||| ||||||||| Sbjct: 151925 aagattcaaaaaggaaaacaaaaaacaaa 151897
>gb|AF532116.1| Mus musculus strain 129/SvJ BAC clone citb585c7 from the MHC region, complete sequence Length = 192871 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaac 134 ||||||||||||||||||||| Sbjct: 65633 acaaaaaggaaaaccaaaaac 65653
>gb|AC175394.3| Gallus gallus BAC clone TAM31-49F22 from chromosome w, complete sequence Length = 123919 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaacaaac 138 |||||||| |||||||||||||||| Sbjct: 121577 acaaaaagaaaaaccaaaaacaaac 121553
>gb|AC101740.7| Mus musculus chromosome 18, clone RP23-478L7, complete sequence Length = 190209 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 109 aagatacaaaaaggaaaaccaaaaacaaa 137 ||||| ||||||||||||| ||||||||| Sbjct: 64133 aagattcaaaaaggaaaacaaaaaacaaa 64105
>emb|AL773565.17| Mouse DNA sequence from clone RP23-76A20 on chromosome X, complete sequence Length = 132915 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 caacagcatccagtattccca 59 ||||||||||||||||||||| Sbjct: 78314 caacagcatccagtattccca 78334 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 caacagcatccagtattccca 59 ||||||||||||||||||||| Sbjct: 60272 caacagcatccagtattccca 60252 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 caacagcatccagtattccca 59 ||||||||||||||||||||| Sbjct: 23301 caacagcatccagtattccca 23281
>emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chromosome 4, complete sequence Length = 89437 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 105 ctcaaagatacaaaaaggaaaaccaaaaacaaa 137 |||||||| ||||||| ||||||||||||||| Sbjct: 56897 ctcaaagaaacaaaaaacaaaaccaaaaacaaa 56865
>gb|AC009749.9| Drosophila melanogaster clone BACR40I04, complete sequence Length = 161276 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 21909 aaaaccaaaaacaaactcaa 21890
>gb|AC004633.1| Homo sapiens chromosome 5, P1 clone 41e13 (LBNL H151), complete sequence Length = 89484 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaa 133 |||||||||||||||||||| Sbjct: 72302 acaaaaaggaaaaccaaaaa 72321
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgaatcacttccaagaaaat 195 |||||||||||||||||||| Sbjct: 1001190 tgaatcacttccaagaaaat 1001171
>gb|AC137676.11| Mus musculus chromosome 5, clone RP23-1N19, complete sequence Length = 187726 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 caaaaaggaaaaccaaaaacaaac 138 |||||||||||| ||||||||||| Sbjct: 127754 caaaaaggaaaaacaaaaacaaac 127777
>gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p11.4, complete sequence Length = 138039 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 65561 acaaaaaggaaaaacaaaaacaaa 65584
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tgaatcacttccaagaaaat 195 |||||||||||||||||||| Sbjct: 823772 tgaatcacttccaagaaaat 823791
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tgaatcacttccaagaaaat 195 |||||||||||||||||||| Sbjct: 792506 tgaatcacttccaagaaaat 792525
>gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 map human ortholog p11.4 complete sequence Length = 141470 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 90815 acaaaaaggaaaaacaaaaacaaa 90838
>gb|AC004906.3| Homo sapiens PAC clone RP5-852O24 from 7, complete sequence Length = 97749 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||| |||||||||||||||| Sbjct: 55866 acaaaaacgaaaaccaaaaacaaa 55843
>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209149 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 cagtattcccaagtgaaaacagta 72 ||||||||||||||| |||||||| Sbjct: 132104 cagtattcccaagtgcaaacagta 132081
>gb|AC148758.19| Medicago truncatula clone mth2-50l17, complete sequence Length = 128831 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 54583 acaaaaaggaaaaacaaaaacaaa 54606
>emb|AL449363.12| Human DNA sequence from clone CTA-444M12 on chromosome 6 Contains the 5' part of the SLC2A12 gene for solute carrier family 2 (facilitated glucose transporter) member 12 and a high-mobility group (nonhistone chromosomal) protein variants I and Y (HMGIY) pseudogene, complete sequence Length = 141289 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 138558 acaaaaaggaaaaacaaaaacaaa 138535
>emb|AL359715.12| Human DNA sequence from clone RP11-250B2 on chromosome 6 Contains a 60S ribosomal protein L17 (RPL17) pseudogene, a novel gene and a laminin receptor 1 (LAMR1) pseudogene, complete sequence Length = 122379 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaacaaactca 141 |||||||||||| ||||||| ||||||| Sbjct: 100990 acaaaaaggaaatccaaaaataaactca 100963
>emb|AL355390.4| Human DNA sequence from clone RP11-512C24 on chromosome 13 Contains a 60S ribosomal protein 21 (RPL21) pseudogene and a novel gene, complete sequence Length = 158951 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aaggaaaaccaaaaacaaac 138 |||||||||||||||||||| Sbjct: 1918 aaggaaaaccaaaaacaaac 1899
>gb|AC162874.2| Mus musculus chromosome 5, clone RP24-289G19, complete sequence Length = 152182 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 caaaaaggaaaaccaaaaacaaac 138 |||||||||||| ||||||||||| Sbjct: 66422 caaaaaggaaaaacaaaaacaaac 66399
>emb|AJ851642.1| Gallus gallus mRNA for hypothetical protein, clone 14m6 Length = 3322 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aaaaaggaaaaccaaaaaca 135 |||||||||||||||||||| Sbjct: 2573 aaaaaggaaaaccaaaaaca 2592
>gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, complete sequence Length = 183453 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 138007 acaaaaaggaaaaacaaaaacaaa 138030
>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3, complete sequence Length = 193659 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 attttgttctgaacactaaagaaa 329 ||||||| |||||||||||||||| Sbjct: 105350 attttgtgctgaacactaaagaaa 105373
>emb|CR456624.7| Zebrafish DNA sequence from clone CH211-69E5 in linkage group 13, complete sequence Length = 172195 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ccaaatcagcaccatacaca 275 |||||||||||||||||||| Sbjct: 69990 ccaaatcagcaccatacaca 69971
>gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, complete sequence Length = 258929 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acaaaaaggaaaaccaaaaa 133 |||||||||||||||||||| Sbjct: 40778 acaaaaaggaaaaccaaaaa 40797
>emb|BX323597.9| Zebrafish DNA sequence from clone CH211-227N13 in linkage group 11, complete sequence Length = 177773 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ccaaatcagcaccatacaca 275 |||||||||||||||||||| Sbjct: 141871 ccaaatcagcaccatacaca 141852
>gb|AC079595.19| Homo sapiens 12q BAC RP11-337M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156280 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tacaaaaaggaaaaccaaaa 132 |||||||||||||||||||| Sbjct: 14240 tacaaaaaggaaaaccaaaa 14221
>gb|AC093880.4| Homo sapiens BAC clone RP11-651C2 from 4, complete sequence Length = 169968 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaagcaatatccccttgagt 103 |||||||||||||||||||| Sbjct: 136753 aaagcaatatccccttgagt 136772
>gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, complete sequence Length = 180650 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 7224 aaaaccaaaaacaaactcaa 7205
>gb|AC018612.7| Homo sapiens chromosome 8, clone RP11-34K13, complete sequence Length = 178525 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttccaacagcatccagtatt 55 |||||||||||||||||||| Sbjct: 128938 ttccaacagcatccagtatt 128957
>gb|AC016194.7| Homo sapiens chromosome 8, clone RP11-24F20, complete sequence Length = 146768 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 51829 aaaaccaaaaacaaactcaa 51810
>gb|AC011853.7| Homo sapiens chromosome 8, clone RP11-403D15, complete sequence Length = 171541 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttccaacagcatccagtatt 55 |||||||||||||||||||| Sbjct: 36186 ttccaacagcatccagtatt 36205
>gb|AC091700.4| Homo sapiens chromosome 15 clone CTD-2173F13 map 15q22, complete sequence Length = 97653 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 8127 aaaaccaaaaacaaactcaa 8146
>gb|AC092079.2| Homo sapiens chromosome 15 clone RP11-568G20 map 15q22, complete sequence Length = 195554 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 123418 aaaaccaaaaacaaactcaa 123437
>gb|AC010490.6| Homo sapiens chromosome 5 clone CTD-2333M24, complete sequence Length = 127188 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 104205 aaaaccaaaaacaaactcaa 104186
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 ctgccaaatcagcaccatacacaa 276 ||||||||||||||| |||||||| Sbjct: 5490856 ctgccaaatcagcacaatacacaa 5490879
>gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, region 25C-25C, BAC clone BACR13M11, complete sequence Length = 162387 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 45545 aaaaccaaaaacaaactcaa 45564
>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence Length = 217615 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaaggaaaaccaaaaacaaa 137 |||||||||||||||||||| Sbjct: 76419 aaaggaaaaccaaaaacaaa 76438
>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence Length = 170528 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaaggaaaaccaaaaacaaa 137 |||||||||||||||||||| Sbjct: 294 aaaggaaaaccaaaaacaaa 313
>gb|AC109816.3| Homo sapiens BAC clone RP11-98I18 from 2, complete sequence Length = 70135 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaaggaaaaccaaaaacaaa 137 |||||||||||||||||||| Sbjct: 16451 aaaggaaaaccaaaaacaaa 16432
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgaatcacttccaagaaaat 195 |||||||||||||||||||| Sbjct: 1330541 tgaatcacttccaagaaaat 1330522
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 ctgccaaatcagcaccatacacaa 276 ||||||||||||||| |||||||| Sbjct: 87696 ctgccaaatcagcacaatacacaa 87719
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tgaatcacttccaagaaaat 195 |||||||||||||||||||| Sbjct: 566344 tgaatcacttccaagaaaat 566363
>gb|AF225925.1|AF225925 Musca domestica staufen gene, complete cds; and brain tumor (brat) gene, partial cds Length = 8002 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaaggaaaaccaaaaacaaa 137 |||||||||||||||||||| Sbjct: 1863 aaaggaaaaccaaaaacaaa 1882
>dbj|AP003877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_E09 Length = 100932 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 atttatttccaaaatttcataaca 24 ||||||||||||||||| |||||| Sbjct: 62824 atttatttccaaaatttgataaca 62801
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence Length = 177555 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gagtactcaaagatacaaaa 119 |||||||||||||||||||| Sbjct: 163762 gagtactcaaagatacaaaa 163743
>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22, complete sequence Length = 141779 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ccaaatcagcaccatacaca 275 |||||||||||||||||||| Sbjct: 115005 ccaaatcagcaccatacaca 115024
>gb|AE003608.5| Drosophila melanogaster chromosome 2L, section 17 of 83 of the complete sequence Length = 174887 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaaccaaaaacaaactcaa 142 |||||||||||||||||||| Sbjct: 47818 aaaaccaaaaacaaactcaa 47837
>dbj|AP003100.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-27G22, complete sequence Length = 200276 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaaaaccaaaaacaaactca 141 |||||||||||||||||||| Sbjct: 96496 gaaaaccaaaaacaaactca 96515
>dbj|AP002981.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1167D1 Length = 166666 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaacaaa 137 ||||||||||||| |||||||||| Sbjct: 107562 acaaaaaggaaaaacaaaaacaaa 107539
>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete sequence Length = 191255 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tcaaagatacaaaaaggaaa 125 |||||||||||||||||||| Sbjct: 118140 tcaaagatacaaaaaggaaa 118159
>dbj|D21196.1|DDIMTRP Dictyostelium discoideum mitochondrial DNA Length = 11779 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 aaaaggaaaaccaaaaacaa 136 |||||||||||||||||||| Sbjct: 6643 aaaaggaaaaccaaaaacaa 6662
>dbj|AB000109.1| Dictyostelium discoideum mitochondrial DNA, complete sequence Length = 55564 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 aaaaggaaaaccaaaaacaa 136 |||||||||||||||||||| Sbjct: 37422 aaaaggaaaaccaaaaacaa 37441
>emb|AL672246.8| Mouse DNA sequence from clone RP23-345N9 on chromosome X, complete sequence Length = 137490 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 acaaaaaggaaaaccaaaaa 133 |||||||||||||||||||| Sbjct: 90512 acaaaaaggaaaaccaaaaa 90493 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,375,507 Number of Sequences: 3902068 Number of extensions: 4375507 Number of successful extensions: 103760 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103376 Number of HSP's gapped (non-prelim): 384 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)