| Clone Name | rbast34g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 44.1 bits (22), Expect = 0.024 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 aacatatttgctcaaaataaat 42 |||||||||||||||||||||| Sbjct: 456908 aacatatttgctcaaaataaat 456929
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acatatttgctcaaaataaa 41 |||||||||||||||||||| Sbjct: 146571 acatatttgctcaaaataaa 146552
>gb|AE017336.2| Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 atatttgctcaaaataaata 43 |||||||||||||||||||| Sbjct: 118575 atatttgctcaaaataaata 118594
>gb|AF065404.1| Bacillus anthracis virulence plasmid PX01, complete sequence Length = 181654 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 atatttgctcaaaataaata 43 |||||||||||||||||||| Sbjct: 160658 atatttgctcaaaataaata 160639
>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence Length = 160275 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acatatttgctcaaaataaa 41 |||||||||||||||||||| Sbjct: 80311 acatatttgctcaaaataaa 80292
>gb|AE011190.1| Bacillus anthracis str. A2012 plasmid pXO1, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 atatttgctcaaaataaata 43 |||||||||||||||||||| Sbjct: 118575 atatttgctcaaaataaata 118594
>emb|BX510312.7| Zebrafish DNA sequence from clone CH211-240B21 in linkage group 5, complete sequence Length = 177177 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aacatatttgctcaaaataa 40 |||||||||||||||||||| Sbjct: 88481 aacatatttgctcaaaataa 88500
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acatatttgctcaaaataaa 41 |||||||||||||||||||| Sbjct: 18673456 acatatttgctcaaaataaa 18673437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ccaacatatttgctcaaaat 38 |||||||||||||||||||| Sbjct: 21627764 ccaacatatttgctcaaaat 21627783 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 40463266 tttgctcaaaataaataa 40463283
>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697C12 Length = 149098 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ccaacatatttgctcaaaat 38 |||||||||||||||||||| Sbjct: 84317 ccaacatatttgctcaaaat 84336
>dbj|AK065822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042A04, full insert sequence Length = 1906 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ccaacatatttgctcaaaat 38 |||||||||||||||||||| Sbjct: 474 ccaacatatttgctcaaaat 493
>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20, complete sequence Length = 153569 Score = 40.1 bits (20), Expect = 0.37 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aacatatttgctcaaaataa 40 |||||||||||||||||||| Sbjct: 10982 aacatatttgctcaaaataa 10963
>emb|AL354774.17| Human DNA sequence from clone RP11-67L17 on chromosome 13, complete sequence Length = 125693 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 acatatttgctcaaaataaataa 44 |||||||||| |||||||||||| Sbjct: 70271 acatatttgcacaaaataaataa 70293
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187921 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tatttgctcaaaataaata 43 ||||||||||||||||||| Sbjct: 140661 tatttgctcaaaataaata 140679
>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21, complete sequence Length = 181237 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 22 acatatttgctcaaaataaataa 44 ||||||||||| ||||||||||| Sbjct: 171360 acatatttgctgaaaataaataa 171338
>gb|AC007494.8| Homo sapiens chromosome 16 clone RP11-329J18, complete sequence Length = 206262 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 acccaacatatttgctcaa 35 ||||||||||||||||||| Sbjct: 49505 acccaacatatttgctcaa 49487
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tatttgctcaaaataaata 43 ||||||||||||||||||| Sbjct: 222232 tatttgctcaaaataaata 222250
>emb|AL590443.1|CNS07EGA chromosome III of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 194439 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 caacatatttgctcaaaat 38 ||||||||||||||||||| Sbjct: 55038 caacatatttgctcaaaat 55020
>gb|AC104918.13| Mus musculus chromosome 7, clone RP23-335G1, complete sequence Length = 204099 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 ttaaatacccaacatatt 28 |||||||||||||||||| Sbjct: 91876 ttaaatacccaacatatt 91893
>gb|AC129943.8| Mus musculus chromosome 5, clone RP23-410M21, complete sequence Length = 178544 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 13 aaatacccaacatatttgctca 34 |||| ||||||||||||||||| Sbjct: 126587 aaatgcccaacatatttgctca 126608
>ref|XM_711633.1| Candida albicans SC5314 endo-1,3-beta-glucanase (CaO19_3417), mRNA Length = 2205 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 atatttgctcaaaataaa 41 |||||||||||||||||| Sbjct: 1336 atatttgctcaaaataaa 1353
>gb|AC084159.2| Caenorhabditis elegans cosmid Y73B3A, complete sequence Length = 122855 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 atttgctcaaaataaata 43 |||||||||||||||||| Sbjct: 55335 atttgctcaaaataaata 55318
>emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in linkage group 15, complete sequence Length = 173535 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 17 acccaacatatttgctcaaaat 38 |||||| ||||||||||||||| Sbjct: 120685 acccaagatatttgctcaaaat 120706
>gb|AC123551.5| Mus musculus BAC clone RP24-330P10 from chromosome 1, complete sequence Length = 167597 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 123494 taaatacccaacatattt 123511
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence Length = 203739 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 atttgctcaaaataaata 43 |||||||||||||||||| Sbjct: 163041 atttgctcaaaataaata 163058
>emb|BX928741.7| Zebrafish DNA sequence from clone CH211-119L15 in linkage group 8, complete sequence Length = 58030 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 25 tatttgctcaaaataaataacc 46 ||||| |||||||||||||||| Sbjct: 40814 tatttcctcaaaataaataacc 40793
>gb|AC098743.3| Mus musculus BAC clone RP23-122O4 from 1, complete sequence Length = 225868 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 36924 taaatacccaacatattt 36941
>gb|AC006333.3| Homo sapiens BAC clone RP11-390E23 from 7, complete sequence Length = 187532 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 aacatatttgctcaaaat 38 |||||||||||||||||| Sbjct: 152569 aacatatttgctcaaaat 152552
>gb|AC006478.2| Homo sapiens PAC clone RP5-847G17 from 7, complete sequence Length = 173239 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 aacatatttgctcaaaat 38 |||||||||||||||||| Sbjct: 169388 aacatatttgctcaaaat 169405
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 125599 tttgctcaaaataaataa 125616
>gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, complete sequence Length = 181482 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 aacatatttgctcaaaat 38 |||||||||||||||||| Sbjct: 41648 aacatatttgctcaaaat 41631
>gb|AC126011.9| Medicago truncatula clone mth2-24f16, complete sequence Length = 92933 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 91446 tttgctcaaaataaataa 91463
>emb|AL049732.11|HSDA14C6 Human DNA sequence from clone RP6-14C6 on chromosome Xp11.21-11.23 Contains the 3' end of the PFKFB1 gene for 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1, and the TRO gene for trophinin, complete sequence Length = 103115 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 atatttgctcaaaataaa 41 |||||||||||||||||| Sbjct: 60094 atatttgctcaaaataaa 60111
>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 7/17 Length = 348813 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 atatttgctcaaaataaa 41 |||||||||||||||||| Sbjct: 340742 atatttgctcaaaataaa 340759
>emb|AL033391.1|CAC20C1 C.albicans cosmid Ca20C1 Length = 37968 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 atatttgctcaaaataaa 41 |||||||||||||||||| Sbjct: 37392 atatttgctcaaaataaa 37375
>gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163709 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 aaatacccaacatatttg 30 |||||||||||||||||| Sbjct: 88352 aaatacccaacatatttg 88369
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 aaatacccaacatatttg 30 |||||||||||||||||| Sbjct: 172171 aaatacccaacatatttg 172188
>gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143444 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 23 catatttgctcaaaataaataa 44 |||||||||| ||||||||||| Sbjct: 83828 catatttgcttaaaataaataa 83849
>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome Length = 305107 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 15997 taaatacccaacatattt 15980
>gb|AC019179.4|AC019179 Homo sapiens BAC clone RP11-240A16 from 4, complete sequence Length = 196721 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 175863 tttgctcaaaataaataa 175846
>emb|AL670860.6| Mouse DNA sequence from clone RP23-50K11 on chromosome 2, complete sequence Length = 83914 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 75795 tttgctcaaaataaataa 75812
>gb|AC053523.5| Homo sapiens BAC clone RP11-563J6 from 2, complete sequence Length = 172405 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 163085 tttgctcaaaataaataa 163068
>gb|AF369029.2| White spot syndrome virus, complete genome Length = 292967 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 64953 taaatacccaacatattt 64936
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 114507 tttgctcaaaataaataa 114524
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 24890 tttgctcaaaataaataa 24907
>gb|AC163632.3| Mus musculus BAC clone RP23-339H2 from chromosome 16, complete sequence Length = 190341 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 23 catatttgctcaaaataaataa 44 ||||||||| |||||||||||| Sbjct: 38930 catatttgcccaaaataaataa 38951
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence Length = 169897 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 119581 tttgctcaaaataaataa 119598
>gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence Length = 123805 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 109204 tttgctcaaaataaataa 109221
>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome Length = 307287 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 49586 taaatacccaacatattt 49569
>gb|AY897234.1| Shrimp white spot syndrome virus envelope protein (VP108) mRNA, complete cds Length = 3027 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 taaatacccaacatattt 29 |||||||||||||||||| Sbjct: 1031 taaatacccaacatattt 1048
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 aaatacccaacatatttg 30 |||||||||||||||||| Sbjct: 245181 aaatacccaacatatttg 245198
>emb|BX000439.11| Mouse DNA sequence from clone RP23-430L20 on chromosome 2, complete sequence Length = 128388 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 ttaaatacccaacatatt 28 |||||||||||||||||| Sbjct: 67969 ttaaatacccaacatatt 67952
>dbj|AP006142.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08A24, TM0250, complete sequence Length = 104321 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 45385 tttgctcaaaataaataa 45402
>gb|AF047661.2| Caenorhabditis elegans cosmid M70, complete sequence Length = 40314 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 atttgctcaaaataaata 43 |||||||||||||||||| Sbjct: 24845 atttgctcaaaataaata 24828
>gb|AC158523.2| Mus musculus BAC clone RP23-371I11 from chromosome 12, complete sequence Length = 176139 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 aacatatttgctcaaaat 38 |||||||||||||||||| Sbjct: 78805 aacatatttgctcaaaat 78788
>emb|AL805920.7| Mouse DNA sequence from clone RP23-162M7 on chromosome X, complete sequence Length = 125192 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 tttgctcaaaataaataa 44 |||||||||||||||||| Sbjct: 22903 tttgctcaaaataaataa 22920 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,015,223 Number of Sequences: 3902068 Number of extensions: 1015223 Number of successful extensions: 223362 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222993 Number of HSP's gapped (non-prelim): 369 length of query: 46 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 26 effective length of database: 17,155,003,908 effective search space: 446030101608 effective search space used: 446030101608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)