ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast34g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K13, full insert sequence Length = 1545 Score = 168 bits (85), Expect = 4e-39 Identities = 112/121 (92%) Strand = Plus / Minus Query: 96 ctcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatc 155 ||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 1087 ctcagcttctgttcttgcatttctccattgccctcggtgcaaggccaatagcttctgatc 1028 Query: 156 ctttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtccccga 215 |||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||| |||| Sbjct: 1027 ctttcattatcctaaggcgcttgcatgattcaacaaacatctcccatgggacgtcgccga 968 Query: 216 c 216 | Sbjct: 967 c 967
>gb|AY781902.1| Saccharum hybrid cultivar isolate c57 auxin-induced protein mRNA, partial cds Length = 1046 Score = 155 bits (78), Expect = 7e-35 Identities = 111/122 (90%) Strand = Plus / Minus Query: 95 cctcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgat 154 |||||||| |||||||||||||||||||| ||||| || || |||||||| ||||||||| Sbjct: 571 cctcagcttctgttcttgcatttctccatggccctcggcgcgaggccaatggcttctgat 512 Query: 155 cctttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtccccg 214 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 511 cctttcatgatccgaaggcgcttgcatgattcgacgaacatctcccacggcacgtcgccg 452 Query: 215 ac 216 || Sbjct: 451 ac 450
>gb|AY103836.1| Zea mays PCO135053 mRNA sequence Length = 1519 Score = 155 bits (78), Expect = 7e-35 Identities = 102/110 (92%) Strand = Plus / Minus Query: 95 cctcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgat 154 |||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||| Sbjct: 998 cctcagcttctgttcttgcatttctccatggcccttggtgccaggccaatggcttctgat 939 Query: 155 cctttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgg 204 |||||||| |||||||||||||||||||| || ||||||||||||||||| Sbjct: 938 cctttcatgatccgaaggcgcttgcatgattcgacgaacatctcccacgg 889
>ref|XM_468970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 707 Score = 113 bits (57), Expect = 2e-22 Identities = 96/109 (88%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| || | Sbjct: 702 tcttgcatttctccactgcccttggtgcaaggccaatggcttcagaccctttcatgattc 643 Query: 168 gaaggcgcttgcatgactcaacgaacatctcccacgggacgtccccgac 216 | ||||| ||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 642 ggaggcgtttgcacgactcgacgaacatctcccacgggacgtcgccgac 594
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 99.6 bits (50), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| Sbjct: 25345133 caaggccaatagcttctgatcctttcattatcctaaggcgcttgcatgattcaacaaaca 25345192 Query: 195 tc 196 || Sbjct: 25345193 tc 25345194 Score = 52.0 bits (26), Expect = 7e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 96 ctcagctcctgttcttgcatttctccatcgccct 129 ||||||| |||||||||||||||||||| ||||| Sbjct: 25344953 ctcagcttctgttcttgcatttctccattgccct 25344986
>emb|AJ306829.1|PTR306829 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA6 gene) Length = 1206 Score = 99.6 bits (50), Expect = 3e-18 Identities = 83/94 (88%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 |||||||||||||||| || ||||| ||||| |||| |||||| |||||||||||||| | Sbjct: 1027 tcttgcatttctccattgctcttggtgcaagtccaacagcttcagatcctttcattatgc 968 Query: 168 gaaggcgcttgcatgactcaacgaacatctccca 201 | ||||||||||||| ||||| ||||||||||| Sbjct: 967 gcgggcgcttgcatgaatcaacaaacatctccca 934
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 99.6 bits (50), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| Sbjct: 25273309 caaggccaatagcttctgatcctttcattatcctaaggcgcttgcatgattcaacaaaca 25273368 Query: 195 tc 196 || Sbjct: 25273369 tc 25273370 Score = 52.0 bits (26), Expect = 7e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 96 ctcagctcctgttcttgcatttctccatcgccct 129 ||||||| |||||||||||||||||||| ||||| Sbjct: 25273129 ctcagcttctgttcttgcatttctccattgccct 25273162
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 99.6 bits (50), Expect = 3e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| Sbjct: 11943 caaggccaatagcttctgatcctttcattatcctaaggcgcttgcatgattcaacaaaca 12002 Query: 195 tc 196 || Sbjct: 12003 tc 12004 Score = 52.0 bits (26), Expect = 7e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 96 ctcagctcctgttcttgcatttctccatcgccct 129 ||||||| |||||||||||||||||||| ||||| Sbjct: 11763 ctcagcttctgttcttgcatttctccattgccct 11796
>emb|AJ843999.1| Plantago major mRNA for auxin resistance protein (axr2 gene) Length = 1195 Score = 95.6 bits (48), Expect = 5e-17 Identities = 96/112 (85%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctt 158 |||| ||| |||||||||||||||| ||||| || ||||| ||||| || || | ||||| Sbjct: 835 agcttctgctcttgcatttctccatggccctgggtgcaagtccaatggcctcagttcctt 776 Query: 159 tcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 ||||||| || |||||||||||||| |||| ||||||||||| |||||||| Sbjct: 775 tcattatgcgcaggcgcttgcatgatccaacaaacatctcccatgggacgtc 724
>gb|AF123509.1|AF123509 Nicotiana tabacum Nt-iaa4.1 deduced protein mRNA, complete cds Length = 884 Score = 89.7 bits (45), Expect = 3e-15 Identities = 90/105 (85%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 |||||| ||||||||||||||||||| || ||||| || || ||||| || |||||||| Sbjct: 741 tcagcttctgttcttgcatttctccactgctcttggtgctagtccaattgcctctgatcc 682 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctccca 201 ||||||||||| | ||| |||||||| ||||| ||||||||||| Sbjct: 681 tttcattatccttaagcgtttgcatgaatcaacaaacatctccca 637
>gb|AF123508.1|AF123508 Nicotiana tabacum Nt-iaa28 deduced protein mRNA, complete cds Length = 943 Score = 81.8 bits (41), Expect = 8e-13 Identities = 89/105 (84%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 |||||| ||||||||||||||||||| || ||||| || || ||||| || || ||||| Sbjct: 783 tcagcttctgttcttgcatttctccactgctcttggtgctagtccaatggcctcagatcc 724 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctccca 201 ||||||||||| | ||| |||||||| ||||| ||||||||||| Sbjct: 723 tttcattatccttaagcgtttgcatgaatcaacaaacatctccca 679
>dbj|AB029148.1| Cucumis sativus mRNA expressed in cucumber hypocotyls, complete cds Length = 1187 Score = 81.8 bits (41), Expect = 8e-13 Identities = 92/109 (84%) Strand = Plus / Minus Query: 96 ctcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatc 155 ||||||| || ||||||||||||||||| |||||||| ||||| ||||| || ||| || Sbjct: 825 ctcagcttctattcttgcatttctccatagcccttggtgcaagtccaatggcctcttttc 766 Query: 156 ctttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgg 204 ||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct: 765 ctttcatgatacgtagacgtttgcaagattcaacaaacatctcccacgg 717
>ref|NM_111345.2| Arabidopsis thaliana IAA16; transcription factor AT3G04730 (IAA16) mRNA, complete cds Length = 1279 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 891 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 832 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 831 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 785
>gb|BT000857.1| Arabidopsis thaliana At3g04730/F7O18_22 mRNA, complete cds Length = 711 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 704 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 645 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 644 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 598
>gb|AF375420.1| Arabidopsis thaliana AT3g04730/F7O18_22 mRNA, complete cds Length = 1261 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 887 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 828 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 827 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 781
>dbj|AK221957.1| Arabidopsis thaliana mRNA for auxin-induced protein, complete cds, clone: RAFL22-51-M14 Length = 519 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 244 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 185 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 184 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 138
>gb|AF332400.1| Arabidopsis thaliana clone C00021 (e) auxin-induced protein IAA16 (At3g04730) mRNA, complete cds Length = 711 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 704 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 645 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 644 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 598
>emb|BX823949.1|CNS0A6JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZF01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1096 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 846 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 787 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 786 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 740
>emb|BX824584.1|CNS0A4VR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH58ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1234 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 875 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 816 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 815 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 769
>gb|AY087195.1| Arabidopsis thaliana clone 32727 mRNA, complete sequence Length = 1140 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 891 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 832 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 831 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 785
>gb|U49072.1|ATU49072 Arabidopsis thaliana early auxin-induced (IAA16) mRNA, complete cds Length = 1169 Score = 69.9 bits (35), Expect = 3e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| || || | |||||||| ||||| || || ||||||||||| |||||| Sbjct: 870 ctgttcttgcacttttctaatgcccttggagcaagtccgattgcttctgatcccttcatt 811 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 || || | || |||||||| ||||| |||||||||||||| ||||| Sbjct: 810 attcgtatacgtttgcatgaatcaacaaacatctcccacggtacgtc 764
>dbj|AP006633.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L11, TM0071, complete sequence Length = 69786 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 |||| ||||| |||||||||||||||||||| || ||||| ||||||||| |||| |||| Sbjct: 23388 caagaccaattgcttctgatcctttcattattcgcaggcgtttgcatgacccaacaaaca 23329 Query: 195 tc 196 || Sbjct: 23328 tc 23327 Score = 42.1 bits (21), Expect = 0.69 Identities = 33/37 (89%) Strand = Plus / Minus Query: 96 ctcagctcctgttcttgcatttctccatcgcccttgg 132 ||||||| ||||| |||||||||||||| || ||||| Sbjct: 23559 ctcagcttctgtttttgcatttctccatggctcttgg 23523
>ref|NM_117535.4| Arabidopsis thaliana IAA14 (SOLITARY ROOT); transcription factor AT4G14550 (IAA14) mRNA, complete cds Length = 1482 Score = 65.9 bits (33), Expect = 5e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||| | |||||||| || ||||| ||||| ||||| ||||| |||||||||||| Sbjct: 776 ctgttcttgaacttctccattgctcttggagcaagtccaattgcttcggatcctttcatt 717 Query: 164 atccgaaggcgcttgcatgactcaacgaacatc 196 || || | || ||||||||||| || |||||| Sbjct: 716 atgcgcaaacgtttgcatgactcgacaaacatc 684
>gb|AF334718.1| Arabidopsis thaliana IAA14 (At4g14550) mRNA, complete cds Length = 687 Score = 65.9 bits (33), Expect = 5e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||| | |||||||| || ||||| ||||| ||||| ||||| |||||||||||| Sbjct: 680 ctgttcttgaacttctccattgctcttggagcaagtccaattgcttcggatcctttcatt 621 Query: 164 atccgaaggcgcttgcatgactcaacgaacatc 196 || || | || ||||||||||| || |||||| Sbjct: 620 atgcgcaaacgtttgcatgactcgacaaacatc 588
>gb|U18416.1|ATU18416 Arabidopsis thaliana IAA14 (IAA14) gene, partial cds Length = 732 Score = 65.9 bits (33), Expect = 5e-08 Identities = 78/93 (83%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||| | |||||||| || ||||| ||||| ||||| ||||| |||||||||||| Sbjct: 488 ctgttcttgaacttctccattgctcttggagcaagtccaattgcttcggatcctttcatt 429 Query: 164 atccgaaggcgcttgcatgactcaacgaacatc 196 || || | || ||||||||||| || |||||| Sbjct: 428 atgcgcaaacgtttgcatgactcgacaaacatc 396
>emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA2 gene) Length = 1763 Score = 61.9 bits (31), Expect = 7e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctccatcgcccttggggcaaggccaat 144 ||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 1280 tcctgtttttgcatttctccatggcccttggggctaggccaat 1238
>gb|AY137961.1| Mirabilis jalapa clone SM-36 Aux/IAA1 mRNA, partial cds Length = 291 Score = 60.0 bits (30), Expect = 3e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| |||||||| || ||||| ||||| ||| ||| ||| ||||||||| Sbjct: 287 ctgttcttgcacttctccatggctcttggagcaagtccagcagcctcttttcctttcatg 228 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctccca 201 || ||||| | ||||||||||| || ||||||||||| Sbjct: 227 atgcgaagccttttgcatgactccacaaacatctccca 190
>gb|AY129669.1| Mirabilis jalapa auxin-responsive protein IAA1 mRNA, partial cds Length = 990 Score = 60.0 bits (30), Expect = 3e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| |||||||| || ||||| ||||| ||| ||| ||| ||||||||| Sbjct: 578 ctgttcttgcacttctccatggctcttggagcaagtccagcagcctcttttcctttcatg 519 Query: 164 atccgaaggcgcttgcatgactcaacgaacatctccca 201 || ||||| | ||||||||||| || ||||||||||| Sbjct: 518 atgcgaagccttttgcatgactccacaaacatctccca 481
>emb|BX827786.1|CNS0A3TV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH21ZC02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1476 Score = 60.0 bits (30), Expect = 3e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||| | |||||||| || ||||| ||||| ||||| ||||| |||||||||||| Sbjct: 769 ctgttcttgaacttctccattgctcttggagcaagtccaattgcttcggatcctttcatt 710 Query: 164 at 165 || Sbjct: 709 at 708
>gb|AY137963.1| Mirabilis jalapa clone RS-74 Aux/IAA3 mRNA, partial cds Length = 301 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 143 atagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaacatctcccac 202 |||||||||||||| |||||||| ||||| || ||||| || | |||||||||||||| Sbjct: 101 atagcttctgatcccttcattatacgaagacgtttgcacgagttcacgaacatctcccaa 42 Query: 203 gggacgtc 210 || ||||| Sbjct: 41 ggaacgtc 34
>gb|DQ442404.1| Striga asiatica clone StIAA-2 auxin-regulated protein mRNA, complete cds Length = 1126 Score = 56.0 bits (28), Expect = 5e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 146 gcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaacatctccca 201 ||||||| ||||||||| || ||||||||||| ||||| ||||| |||||| |||| Sbjct: 698 gcttctgttcctttcataatacgaaggcgcttacatgattcaacaaacatccccca 643
>gb|AF373100.1| Populus tremula x Populus tremuloides auxin-regulated protein (IAA1) mRNA, complete cds Length = 1313 Score = 56.0 bits (28), Expect = 5e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 104 ctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcatt 163 ||||||||||| ||||||| || |||||||| || ||||| || || || |||||||| Sbjct: 875 ctgttcttgcacttctccacagctcttggggcgagtccaatggcctcagaccctttcatg 816 Query: 164 atccgaaggcgcttgcatgactcaacgaacat 195 |||| | |||||||||||| ||||| ||||| Sbjct: 815 atcctcaagcgcttgcatgaatcaacaaacat 784
>gb|DQ252491.1| Solanum tuberosum clone 060E03 Aux/IAA protein-like mRNA, complete cds Length = 1590 Score = 56.0 bits (28), Expect = 5e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 116 ttctccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 |||||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 1168 ttctccatagcccttggggcgaggccaatggcatctgaacctttcatgatcc 1117
>ref|XM_469684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 811 Score = 54.0 bits (27), Expect = 2e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 ||||||| |||||||| | || ||| | || ||||| ||||| ||||| ||||| || || Sbjct: 811 tcagctcttgttcttgtacttgtcctttgctcttggtgcaagaccaatggcttcggaacc 752 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggac 207 ||||| |||| | ||| ||||||||||| || ||||||| ||||||||| Sbjct: 751 cttcatgatcctcaagcgtttgcatgactcgacaaacatctgccacgggac 701
>emb|AJ306830.1|PTR306830 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA7 gene) Length = 1178 Score = 54.0 bits (27), Expect = 2e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 154 tcctttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtcccc 213 |||||||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || Sbjct: 705 tcctttcattattcgcagccgcttgcatgattcaacaaacatgtcccatgggacatcacc 646 Query: 214 gac 216 ||| Sbjct: 645 gac 643
>emb|AJ251791.1|OSA251791 Oryza sativa partial mRNA for putative IAA1 protein (iaa1 gene) Length = 1068 Score = 54.0 bits (27), Expect = 2e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 ||||||| |||||||| | || ||| | || ||||| ||||| ||||| ||||| || || Sbjct: 863 tcagctcttgttcttgtacttgtcctttgctcttggtgcaagaccaatggcttcggaacc 804 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggac 207 ||||| |||| | ||| ||||||||||| || ||||||| ||||||||| Sbjct: 803 cttcatgatcctcaagcgtttgcatgactcgacaaacatctgccacgggac 753
>dbj|AK100790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121A20, full insert sequence Length = 1092 Score = 54.0 bits (27), Expect = 2e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 ||||||| |||||||| | || ||| | || ||||| ||||| ||||| ||||| || || Sbjct: 873 tcagctcttgttcttgtacttgtcctttgctcttggtgcaagaccaatggcttcggaacc 814 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggac 207 ||||| |||| | ||| ||||||||||| || ||||||| ||||||||| Sbjct: 813 cttcatgatcctcaagcgtttgcatgactcgacaaacatctgccacgggac 763
>dbj|AK062852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A04, full insert sequence Length = 430 Score = 54.0 bits (27), Expect = 2e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 ||||||| |||||||| | || ||| | || ||||| ||||| ||||| ||||| || || Sbjct: 136 tcagctcttgttcttgtacttgtcctttgctcttggtgcaagaccaatggcttcggaacc 77 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggac 207 ||||| |||| | ||| ||||||||||| || ||||||| ||||||||| Sbjct: 76 cttcatgatcctcaagcgtttgcatgactcgacaaacatctgccacgggac 26
>dbj|AK059838.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C11, full insert sequence Length = 1180 Score = 54.0 bits (27), Expect = 2e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 97 tcagctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcc 156 ||||||| |||||||| | || ||| | || ||||| ||||| ||||| ||||| || || Sbjct: 868 tcagctcttgttcttgtacttgtcctttgctcttggtgcaagaccaatggcttcggaacc 809 Query: 157 tttcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggac 207 ||||| |||| | ||| ||||||||||| || ||||||| ||||||||| Sbjct: 808 cttcatgatcctcaagcgtttgcatgactcgacaaacatctgccacgggac 758
>gb|BT013567.1| Lycopersicon esculentum clone 132305F, mRNA sequence Length = 1626 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 1263 tccatagcccttggggccaggccaatggcatctgaacctttcatgatcc 1215
>emb|AJ937282.1| Lycopersicon esculentum partial mRNA for Aux/IAA protein (iaa9 gene) Length = 1752 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 1262 tccatagcccttggggccaggccaatggcatctgaacctttcatgatcc 1214
>gb|AY098938.1| Solanum tuberosum Aux/IAA protein mRNA, complete cds Length = 1589 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 1228 tccatagcccttggggcgaggccaatggcatctgaacctttcatgatcc 1180
>gb|DQ115325.1| Lycopersicon esculentum AUX/IAA protein (IAA4) mRNA, complete cds Length = 1707 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 1263 tccatagcccttggggccaggccaatggcatctgaacctttcatgatcc 1215
>emb|AJ249996.1|LES249996 Lycopersicon esculentum partial mRNA for auxin-responsive protein (ctd1 gene) Length = 454 Score = 50.1 bits (25), Expect = 0.003 Identities = 43/49 (87%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatcc 167 ||||| ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct: 93 tccatagcccttggggccaggccaatggcatctgaacctttcatgatcc 45
>gb|DQ191055.1| Glycine max clone DD7.2 SP-5 mRNA, complete cds Length = 478 Score = 48.1 bits (24), Expect = 0.011 Identities = 39/44 (88%) Strand = Plus / Minus Query: 173 cgcttgcatgactcaacgaacatctcccacgggacgtccccgac 216 ||||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct: 311 cgcttgcatgattcaacaaacatctcccatgggacatcaccgac 268 Score = 42.1 bits (21), Expect = 0.69 Identities = 39/45 (86%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttctccatcgcccttggggcaaggccaa 143 ||||||||||||||||||| |||| || ||||| ||||| |||| Sbjct: 391 agctcctgttcttgcattttgccatggctcttggtgcaagaccaa 347
>emb|AJ575098.1|TAE575098 Triticum aestivum partial mRNA for IAA1 protein Length = 1104 Score = 48.1 bits (24), Expect = 0.011 Identities = 90/112 (80%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctt 158 ||||| |||||||| | || ||| | |||||||| ||||| || || ||||| || || | Sbjct: 776 agctcttgttcttgtacttgtccttggcccttggtgcaagaccgatggcttcggacccct 717 Query: 159 tcattatccgaaggcgcttgcatgactcaacgaacatctcccacgggacgtc 210 |||| |||| | ||| |||||||| |||| ||||||||||| |||||||| Sbjct: 716 tcatgatcctcaagcgtttgcatgaagcaacaaacatctcccatgggacgtc 665
>gb|J03919.1|SOYAUX28 Soybean auxin-regulated protein (Aux28) mRNA, complete cds Length = 1784 Score = 48.1 bits (24), Expect = 0.011 Identities = 39/44 (88%) Strand = Plus / Minus Query: 173 cgcttgcatgactcaacgaacatctcccacgggacgtccccgac 216 ||||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct: 1161 cgcttgcatgattcaacaaacatctcccatgggacatcaccgac 1118 Score = 42.1 bits (21), Expect = 0.69 Identities = 39/45 (86%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttctccatcgcccttggggcaaggccaa 143 ||||||||||||||||||| |||| || ||||| ||||| |||| Sbjct: 1241 agctcctgttcttgcattttgccatggctcttggtgcaagaccaa 1197
>ref|NM_100306.2| Arabidopsis thaliana AXR3 (AUXIN RESISTANT 3); transcription factor AT1G04250 (AXR3) mRNA, complete cds Length = 1057 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 803 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 749
>gb|AF336916.1| Arabidopsis thaliana auxin-induced protein, IAA17/AXR3-1 (At1g04250) mRNA, complete cds Length = 690 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 679 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 625
>gb|AY117183.1| Arabidopsis thaliana auxin-induced protein IAA17/AXR3-1 (At1g04250) mRNA, complete cds Length = 721 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 679 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 625
>gb|AY070094.1| Arabidopsis thaliana auxin-induced protein IAA17/AXR3-1 (At1g04250) mRNA, complete cds Length = 1033 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 761 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 707
>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14, complete sequence Length = 189425 Score = 46.1 bits (23), Expect = 0.045 Identities = 23/23 (100%) Strand = Plus / Minus Query: 60 attttgattcttgcataacattt 82 ||||||||||||||||||||||| Sbjct: 13185 attttgattcttgcataacattt 13163
>dbj|AK221076.1| Arabidopsis thaliana mRNA for putative auxin-induced protein, IAA17/AXR3-1, complete cds, clone: RAFL22-79-F09 Length = 452 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 206 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 152
>gb|AY087284.1| Arabidopsis thaliana clone 33613 mRNA, complete sequence Length = 1021 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 803 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 749
>gb|U49073.1|ATU49073 Arabidopsis thaliana early auxin-induced (IAA17) mRNA, complete cds Length = 971 Score = 46.1 bits (23), Expect = 0.045 Identities = 47/55 (85%) Strand = Plus / Minus Query: 108 tcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| |||||||||||||| || || || ||||| || || ||||||||||| Sbjct: 740 tcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 686
>emb|AM040278.1| Capsicum chinense mRNA for auxin induced protein (aux/iaa gene) Length = 1778 Score = 44.1 bits (22), Expect = 0.18 Identities = 79/98 (80%) Strand = Plus / Minus Query: 119 tccatcgcccttggggcaaggccaatagcttctgatcctttcattatccgaaggcgcttg 178 ||||| ||||||||||| || ||||| || ||||| |||||||| |||| || | |||| Sbjct: 1294 tccatagcccttggggctagaccaatggcatctgaacctttcatgatcctcagcctcttg 1235 Query: 179 catgactcaacgaacatctcccacgggacgtccccgac 216 || | |||| ||||||||||| ||||| || ||||| Sbjct: 1234 caggtatcaataaacatctcccaggggacatcaccgac 1197
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1 Length = 206606 Score = 44.1 bits (22), Expect = 0.18 Identities = 52/62 (83%) Strand = Plus / Plus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 |||| ||||| ||||| |||||||||||||| || | || ||||||||||| || |||| Sbjct: 106636 caagtccaattgcttcggatcctttcattatgcgcaaacgtttgcatgactcgacaaaca 106695 Query: 195 tc 196 || Sbjct: 106696 tc 106697
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39 Length = 197976 Score = 44.1 bits (22), Expect = 0.18 Identities = 52/62 (83%) Strand = Plus / Plus Query: 135 caaggccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaaca 194 |||| ||||| ||||| |||||||||||||| || | || ||||||||||| || |||| Sbjct: 52132 caagtccaattgcttcggatcctttcattatgcgcaaacgtttgcatgactcgacaaaca 52191 Query: 195 tc 196 || Sbjct: 52192 tc 52193
>gb|AF123504.1|AF123504 Nicotiana tabacum Nt-iaa2.3 deduced protein mRNA, complete cds Length = 756 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 gcttctgatcctttcattatcc 167 |||||||||||||||||||||| Sbjct: 564 gcttctgatcctttcattatcc 543
>ref|NM_001033838.1| Ciona intestinalis LIM and SH3 protein (lasp), mRNA Length = 711 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttct 119 ||||||||||||||||||||| Sbjct: 672 agctcctgttcttgcatttct 652
>gb|DQ191056.1| Glycine max clone DD8.1 SP-6 mRNA, complete cds Length = 402 Score = 42.1 bits (21), Expect = 0.69 Identities = 39/45 (86%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttctccatcgcccttggggcaaggccaa 143 ||||||||||||||||||| |||| || ||||| ||||| |||| Sbjct: 310 agctcctgttcttgcattttgccatggctcttggtgcaagaccaa 266
>gb|DQ442403.1| Striga asiatica clone StIAA-1 auxin-regulated protein mRNA, complete cds Length = 1228 Score = 42.1 bits (21), Expect = 0.69 Identities = 48/57 (84%) Strand = Plus / Minus Query: 106 gttcttgcatttctccatcgcccttggggcaaggccaatagcttctgatcctttcat 162 ||||||| ||||||||| ||||| || || || |||||||| || ||||||||||| Sbjct: 909 gttcttggatttctccacagccctgggagctagtccaatagcatcggatcctttcat 853
>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence Length = 198687 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 tcctgttcttgcatttctcca 122 ||||||||||||||||||||| Sbjct: 191268 tcctgttcttgcatttctcca 191288
>gb|AC091879.2| Homo sapiens chromosome 5 clone CTD-3136G21, complete sequence Length = 170712 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcca 122 ||||||||||||||||||||| Sbjct: 168732 tcctgttcttgcatttctcca 168712
>gb|AY082522.1| Vitis vinifera Aux/IAA protein mRNA, complete cds Length = 1481 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcca 122 ||||||||||||||||||||| Sbjct: 1075 tcctgttcttgcatttctcca 1055
>dbj|AB182287.1| Ciona intestinalis mRNA for lasp, complete cds Length = 711 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 agctcctgttcttgcatttct 119 ||||||||||||||||||||| Sbjct: 672 agctcctgttcttgcatttct 652
>emb|X68217.1|PSIAA6R P.sativum mRNA for auxin-induced protein (clone pIAA6) Length = 702 Score = 42.1 bits (21), Expect = 0.69 Identities = 30/33 (90%) Strand = Plus / Minus Query: 175 cttgcatgactcaacgaacatctcccacgggac 207 |||||||||||||| ||||||||||| ||||| Sbjct: 394 cttgcatgactcaataaacatctcccaagggac 362
>emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chromosome X, complete sequence Length = 218612 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 ggacagaaaatatgatccagg 36 ||||||||||||||||||||| Sbjct: 83661 ggacagaaaatatgatccagg 83641
>ref|XM_652254.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (2.t00121) partial mRNA Length = 2247 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 caatagcttctgatcctttc 160 |||||||||||||||||||| Sbjct: 670 caatagcttctgatcctttc 651
>gb|AY337616.1| Gossypium barbadense Gbiaa-Re (iaa-re) mRNA, complete cds Length = 1043 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tagcttctgatcctttcattatcc 167 ||||||||||||||||||| |||| Sbjct: 610 tagcttctgatcctttcatgatcc 587
>emb|AL513493.11| Human DNA sequence from clone RP11-433N2 on chromosome 1 Contains the 5' end of the PDE4B gene for phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), complete sequence Length = 165780 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 20832 tcctgttcttgcatttctcc 20851
>gb|AY962829.1| Prunus armeniaca auxin-induced protein mRNA, partial cds Length = 364 Score = 40.1 bits (20), Expect = 2.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 175 cttgcatgactcaacgaacatctcccacgggacgtc 210 ||||||||||||| ||||||||||| |||||||| Sbjct: 162 cttgcatgactcagtaaacatctcccaagggacgtc 127
>gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complete sequence Length = 179139 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 91797 tcctgttcttgcatttctcc 91778
>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14, complete sequence Length = 151836 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcccttggggcaaggccaat 144 |||||||||||||||||||| Sbjct: 98528 gcccttggggcaaggccaat 98509
>gb|AY254569.1| Gossypium barbadense auxin responsive protein IAA-Re (iaa-Re) mRNA, complete cds Length = 750 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tagcttctgatcctttcattatcc 167 ||||||||||||||||||| |||| Sbjct: 317 tagcttctgatcctttcatgatcc 294
>gb|AC136355.7| Homo sapiens chromosome 15, clone RP11-54M9, complete sequence Length = 65183 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 18021 tcctgttcttgcatttctcc 18040
>gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, complete sequence Length = 178845 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 82053 tcctgttcttgcatttctcc 82072
>gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, complete sequence Length = 194789 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 63054 tcctgttcttgcatttctcc 63073
>gb|AC134980.3| Homo sapiens chromosome 15, clone RP11-69H14, complete sequence Length = 151383 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 36192 tcctgttcttgcatttctcc 36173
>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence Length = 45702 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 gcatttctccatcgcccttggggc 135 ||||||||||||||||| |||||| Sbjct: 34940 gcatttctccatcgcccatggggc 34963
>gb|AC171780.2| Homo sapiens chromosome 15, clone RP11-350K22, complete sequence Length = 192478 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 38659 tcctgttcttgcatttctcc 38640
>gb|AC171558.2| Homo sapiens chromosome 15, clone RP11-983G14, complete sequence Length = 201265 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 67139 tcctgttcttgcatttctcc 67120
>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185605 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tcctgttcttgcatttctcc 121 |||||||||||||||||||| Sbjct: 6170 tcctgttcttgcatttctcc 6151
>dbj|AP006398.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT29J15, TM0280b, complete sequence Length = 68747 Score = 40.1 bits (20), Expect = 2.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 140 ccaatagcttctgatcctttcattatccgaaggcgcttgcatgactcaacgaacat 195 ||||| ||||| || ||||||||||| || || |||||||| || || |||||||| Sbjct: 4408 ccaattgcttcagaacctttcattatgcggagacgcttgcaagattctacgaacat 4463
>dbj|D86559.1| Glycyrrhiza glabra mRNA for polyketide reductase (GGPKR2), complete cds Length = 1197 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 caagcaaggttataggtattttga 66 |||||||||||||||| ||||||| Sbjct: 192 caagcaaggttataggcattttga 215 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,905,950 Number of Sequences: 3902068 Number of extensions: 1905950 Number of successful extensions: 130956 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130767 Number of HSP's gapped (non-prelim): 188 length of query: 216 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 194 effective length of database: 17,147,199,772 effective search space: 3326556755768 effective search space used: 3326556755768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
