ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast34f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 206 2e-50
2gb|U76261.1|HVU76261 Hordeum vulgare highly repeated, retrotrans... 206 2e-50
3gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 149 3e-33
4gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 107 1e-20
5ref|NM_125486.2| Arabidopsis thaliana ATP binding / microtubule ... 38 7.9
6gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.9
7ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predic... 38 7.9
8gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, com... 38 7.9
9ref|XM_384806.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 38 7.9
10gb|AC129331.4| Mus musculus BAC clone RP23-75C8 from chromosome ... 38 7.9
11gb|AC138311.3| Mus musculus BAC clone RP23-61L14 from chromosome... 38 7.9
12emb|AL445989.17| Human DNA sequence from clone RP11-473M10 on ch... 38 7.9
13emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on ch... 38 7.9
14emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chr... 38 7.9
15gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, com... 38 7.9
16gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 38 7.9
17gb|CP000264.1| Jannaschia sp. CCS1, complete genome 38 7.9
18gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 38 7.9
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
21gb|AC102926.14| Mus musculus chromosome 3, clone RP24-237D17, co... 38 7.9
22gb|AC108068.3| Homo sapiens BAC clone RP11-574H22 from 2, comple... 38 7.9
23dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
24dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
25dbj|AK118373.1| Arabidopsis thaliana At5g60930 mRNA for putative... 38 7.9
26dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 7.9
27dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.9
28gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, com... 38 7.9
29emb|CR855311.15| Zebrafish DNA sequence from clone DKEY-97I18 in... 38 7.9
30gb|AC107835.8| Mus musculus chromosome 8, clone RP23-267M21, com... 38 7.9
31gb|AF013140.1|AF013140 Stagnicola caperata internal transcribed ... 38 7.9
32gb|AF013139.1|AF013139 Stagnicola caperata internal transcribed ... 38 7.9
33emb|AL929221.6| Mouse DNA sequence from clone RP23-431D4 on chro... 38 7.9
34dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9

>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score =  206 bits (104), Expect = 2e-50
 Identities = 116/120 (96%)
 Strand = Plus / Minus

                                                                          
Query: 2      tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61
              ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323485 tagtctccgaatacaattcatcatattagtctccgaatttaaaataccgaacaaagttag 323426

                                                                          
Query: 62     aacattacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcgatatc 121
              ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323425 aacattacaagtctcgaaaccgcgagtagcgagtttgtcttcacattacaagtcgatatc 323366



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>gb|U76261.1|HVU76261 Hordeum vulgare highly repeated, retrotransposon-like sequence
          Length = 5050

 Score =  206 bits (104), Expect = 2e-50
 Identities = 116/120 (96%)
 Strand = Plus / Minus

                                                                        
Query: 2    tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61
            ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 2080 tagtctccgaatacaattcatcatattagtctctgaatttaaaataccgaacaaagttag 2021

                                                                        
Query: 62   aacattacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcgatatc 121
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2020 aacattacaagtctcgagaccgcgagtagcgagtttgtcttcacattacaagtcgatatc 1961



 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 104  acattacaagtcgatatctaa 124
            |||||||||||||||||||||
Sbjct: 1941 acattacaagtcgatatctaa 1921



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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score =  149 bits (75), Expect = 3e-33
 Identities = 93/99 (93%)
 Strand = Plus / Minus

                                                                         
Query: 2     tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61
             ||||||||||||||| ||||||||||||||||||||| | |||| ||||||| ||| |||
Sbjct: 15816 tagtctccgaatacaattcatcatattagtctccgaaatcaaaagaccgaacaaagatag 15757

                                                    
Query: 62    aacattacaagtctcgagaccgcgagtagcgagtttgtc 100
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 15756 aacattacaagtctcgagaccgcgagtagcgagtttgtc 15718



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 2     tagtctccgaatacatttcatcatattagtctccgaat 39
             ||||||| ||||||| |||||||| |||||||||||||
Sbjct: 15842 tagtctctgaatacaattcatcattttagtctccgaat 15805



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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score =  107 bits (54), Expect = 1e-20
 Identities = 137/166 (82%), Gaps = 19/166 (11%)
 Strand = Plus / Plus

                                                                          
Query: 2      tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61
              ||||||| ||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||
Sbjct: 101050 tagtctctgaatacaattcatcatattagtctccgaattgaaaagaccgaacaaagatag 101109

                                                                          
Query: 62     aac-----attacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcg 116
              |||     ||||||||||||||||||       ||||||||||||| |||||||||||||
Sbjct: 101110 aacattatattacaagtctcgagacc-------gcgagtttgtcttcacattacaagtcg 101162

                                                            
Query: 117    at-------atctaaactatcatcacctagaagagggttgcggtca 155
              ||       ||||||||||||||||| |||||||| | ||||||||
Sbjct: 101163 atatcgatcatctaaactatcatcacatagaagagagctgcggtca 101208



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>ref|NM_125486.2| Arabidopsis thaliana ATP binding / microtubule motor AT5G60930 mRNA,
            complete cds
          Length = 3885

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   gaaccaagttagaacatta 68
            |||||||||||||||||||
Sbjct: 2625 gaaccaagttagaacatta 2643



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>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07,
             complete sequence
          Length = 114135

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    gcgagtttgtcttgacatt 108
             |||||||||||||||||||
Sbjct: 68336 gcgagtttgtcttgacatt 68354



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>ref|XM_476089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3717

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   gcgagtttgtcttgacatt 108
            |||||||||||||||||||
Sbjct: 1412 gcgagtttgtcttgacatt 1430



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>gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, complete sequence
          Length = 181633

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    tcgatatctaaactatcat 132
              |||||||||||||||||||
Sbjct: 151454 tcgatatctaaactatcat 151472



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>ref|XM_384806.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04630.1)
           partial mRNA
          Length = 660

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  agcgagtttgtcttgacat 107
           |||||||||||||||||||
Sbjct: 19  agcgagtttgtcttgacat 1



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>gb|AC129331.4| Mus musculus BAC clone RP23-75C8 from chromosome 8, complete sequence
          Length = 257765

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    tttgtcttgacattacaag 113
             |||||||||||||||||||
Sbjct: 32024 tttgtcttgacattacaag 32006



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>gb|AC138311.3| Mus musculus BAC clone RP23-61L14 from chromosome 7, complete sequence
          Length = 181340

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    agtttgtcttgacattaca 111
             |||||||||||||||||||
Sbjct: 26364 agtttgtcttgacattaca 26382



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>emb|AL445989.17| Human DNA sequence from clone RP11-473M10 on chromosome 13 Contains two
              novel genes and a pseudogene similar to part of olfactory
              receptor proteins, complete sequence
          Length = 163218

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     aatacatttcatcatatta 29
              |||||||||||||||||||
Sbjct: 154790 aatacatttcatcatatta 154772



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>emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on chromosome 13 Contains a
             protein phosphatase 1, regulatory (inhibitor) subunit 2
             (PPP1R2) pseudogene, a novel gene and an olfactory
             receptor pseudogene, complete sequence
          Length = 174801

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aatacatttcatcatatta 29
             |||||||||||||||||||
Sbjct: 64416 aatacatttcatcatatta 64434



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>emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chromosome 13q14.11-14.3
             Contains a protein phosphatase 1 regulatory (inhibitor)
             subunit 2 (PPP1R2) (IPP2) pseudogene, an olfactory
             receptor pseudogene, the gene for a novel protein similar
             to COX17 homolog cytochrome c oxidase assembly protein
             (yeast) (COX17) and a FK506 binding protein 1A 12kDa
             (FKBP1A) pseudogene and two novel genes, complete sequence
          Length = 116524

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aatacatttcatcatatta 29
             |||||||||||||||||||
Sbjct: 57923 aatacatttcatcatatta 57941



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>gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, complete sequence
          Length = 157029

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   tcgatatctaaactatcat 132
             |||||||||||||||||||
Sbjct: 38751 tcgatatctaaactatcat 38733



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>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gagtagcgagtttgtcttg 103
             |||||||||||||||||||
Sbjct: 71030 gagtagcgagtttgtcttg 71012



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 140     aagagggttgcggtcacga 158
               |||||||||||||||||||
Sbjct: 2017932 aagagggttgcggtcacga 2017950



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>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    taaaataccgaaccaagtt 59
             |||||||||||||||||||
Sbjct: 77087 taaaataccgaaccaagtt 77069



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 90      gcgagtttgtcttgacatt 108
               |||||||||||||||||||
Sbjct: 5861572 gcgagtttgtcttgacatt 5861590



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 13       tacatttcatcatattagt 31
                |||||||||||||||||||
Sbjct: 10154750 tacatttcatcatattagt 10154768



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>gb|AC102926.14| Mus musculus chromosome 3, clone RP24-237D17, complete sequence
          Length = 177195

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    tgtcttgacattacaagtc 115
             |||||||||||||||||||
Sbjct: 88511 tgtcttgacattacaagtc 88529



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>gb|AC108068.3| Homo sapiens BAC clone RP11-574H22 from 2, complete sequence
          Length = 79667

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    aatacatttcatcatatta 29
             |||||||||||||||||||
Sbjct: 55485 aatacatttcatcatatta 55467



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>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0581F09
          Length = 154248

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     tacatttcatcatattagt 31
              |||||||||||||||||||
Sbjct: 102219 tacatttcatcatattagt 102237



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>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    tacatttcatcatattagt 31
             |||||||||||||||||||
Sbjct: 20064 tacatttcatcatattagt 20082



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>dbj|AK118373.1| Arabidopsis thaliana At5g60930 mRNA for putative
           microtubule-associated motor, complete cds, clone:
           RAFL19-64-A22
          Length = 2242

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  gaaccaagttagaacatta 68
           |||||||||||||||||||
Sbjct: 751 gaaccaagttagaacatta 769



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>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3
          Length = 61634

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    gaaccaagttagaacatta 68
             |||||||||||||||||||
Sbjct: 27737 gaaccaagttagaacatta 27719



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>dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full
            insert sequence
          Length = 4316

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   gcgagtttgtcttgacatt 108
            |||||||||||||||||||
Sbjct: 1611 gcgagtttgtcttgacatt 1629



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>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence
          Length = 226595

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 60    agaacattacaagtctcgagacc 82
             ||||||||||||| |||||||||
Sbjct: 68251 agaacattacaagactcgagacc 68273



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>emb|CR855311.15| Zebrafish DNA sequence from clone DKEY-97I18 in linkage group 16,
              complete sequence
          Length = 161379

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     aatacatttcatcatatta 29
              |||||||||||||||||||
Sbjct: 106375 aatacatttcatcatatta 106357



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>gb|AC107835.8| Mus musculus chromosome 8, clone RP23-267M21, complete sequence
          Length = 179297

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 85   gagtagcgagtttgtcttg 103
            |||||||||||||||||||
Sbjct: 8149 gagtagcgagtttgtcttg 8167



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>gb|AF013140.1|AF013140 Stagnicola caperata internal transcribed spacer 1, 5.8S ribosomal RNA
            gene, and internal transcribed spacer 2, complete
            sequence
          Length = 1178

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   cgagaccgcgagtagcgag 94
            |||||||||||||||||||
Sbjct: 1078 cgagaccgcgagtagcgag 1060



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>gb|AF013139.1|AF013139 Stagnicola caperata internal transcribed spacer 1, 5.8S ribosomal RNA
            gene, and internal transcribed spacer 2, complete
            sequence
          Length = 1177

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   cgagaccgcgagtagcgag 94
            |||||||||||||||||||
Sbjct: 1077 cgagaccgcgagtagcgag 1059



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>emb|AL929221.6| Mouse DNA sequence from clone RP23-431D4 on chromosome 2, complete
             sequence
          Length = 160170

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aatacatttcatcatatta 29
             |||||||||||||||||||
Sbjct: 54196 aatacatttcatcatatta 54214



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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004B13
          Length = 142268

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    tacatttcatcatattagt 31
             |||||||||||||||||||
Sbjct: 79349 tacatttcatcatattagt 79367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,078,850
Number of Sequences: 3902068
Number of extensions: 1078850
Number of successful extensions: 59985
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59874
Number of HSP's gapped (non-prelim): 110
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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