| Clone Name | rbast34f11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 206 bits (104), Expect = 2e-50 Identities = 116/120 (96%) Strand = Plus / Minus Query: 2 tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 323485 tagtctccgaatacaattcatcatattagtctccgaatttaaaataccgaacaaagttag 323426 Query: 62 aacattacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcgatatc 121 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 323425 aacattacaagtctcgaaaccgcgagtagcgagtttgtcttcacattacaagtcgatatc 323366
>gb|U76261.1|HVU76261 Hordeum vulgare highly repeated, retrotransposon-like sequence Length = 5050 Score = 206 bits (104), Expect = 2e-50 Identities = 116/120 (96%) Strand = Plus / Minus Query: 2 tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61 ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 2080 tagtctccgaatacaattcatcatattagtctctgaatttaaaataccgaacaaagttag 2021 Query: 62 aacattacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcgatatc 121 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2020 aacattacaagtctcgagaccgcgagtagcgagtttgtcttcacattacaagtcgatatc 1961 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 acattacaagtcgatatctaa 124 ||||||||||||||||||||| Sbjct: 1941 acattacaagtcgatatctaa 1921
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 149 bits (75), Expect = 3e-33 Identities = 93/99 (93%) Strand = Plus / Minus Query: 2 tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61 ||||||||||||||| ||||||||||||||||||||| | |||| ||||||| ||| ||| Sbjct: 15816 tagtctccgaatacaattcatcatattagtctccgaaatcaaaagaccgaacaaagatag 15757 Query: 62 aacattacaagtctcgagaccgcgagtagcgagtttgtc 100 ||||||||||||||||||||||||||||||||||||||| Sbjct: 15756 aacattacaagtctcgagaccgcgagtagcgagtttgtc 15718 Score = 52.0 bits (26), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 2 tagtctccgaatacatttcatcatattagtctccgaat 39 ||||||| ||||||| |||||||| ||||||||||||| Sbjct: 15842 tagtctctgaatacaattcatcattttagtctccgaat 15805
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 107 bits (54), Expect = 1e-20 Identities = 137/166 (82%), Gaps = 19/166 (11%) Strand = Plus / Plus Query: 2 tagtctccgaatacatttcatcatattagtctccgaatttaaaataccgaaccaagttag 61 ||||||| ||||||| ||||||||||||||||||||||| |||| ||||||| ||| ||| Sbjct: 101050 tagtctctgaatacaattcatcatattagtctccgaattgaaaagaccgaacaaagatag 101109 Query: 62 aac-----attacaagtctcgagaccgcgagtagcgagtttgtcttgacattacaagtcg 116 ||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 101110 aacattatattacaagtctcgagacc-------gcgagtttgtcttcacattacaagtcg 101162 Query: 117 at-------atctaaactatcatcacctagaagagggttgcggtca 155 || ||||||||||||||||| |||||||| | |||||||| Sbjct: 101163 atatcgatcatctaaactatcatcacatagaagagagctgcggtca 101208
>ref|NM_125486.2| Arabidopsis thaliana ATP binding / microtubule motor AT5G60930 mRNA, complete cds Length = 3885 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gaaccaagttagaacatta 68 ||||||||||||||||||| Sbjct: 2625 gaaccaagttagaacatta 2643
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gcgagtttgtcttgacatt 108 ||||||||||||||||||| Sbjct: 68336 gcgagtttgtcttgacatt 68354
>ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3717 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gcgagtttgtcttgacatt 108 ||||||||||||||||||| Sbjct: 1412 gcgagtttgtcttgacatt 1430
>gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, complete sequence Length = 181633 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 tcgatatctaaactatcat 132 ||||||||||||||||||| Sbjct: 151454 tcgatatctaaactatcat 151472
>ref|XM_384806.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04630.1) partial mRNA Length = 660 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 agcgagtttgtcttgacat 107 ||||||||||||||||||| Sbjct: 19 agcgagtttgtcttgacat 1
>gb|AC129331.4| Mus musculus BAC clone RP23-75C8 from chromosome 8, complete sequence Length = 257765 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 tttgtcttgacattacaag 113 ||||||||||||||||||| Sbjct: 32024 tttgtcttgacattacaag 32006
>gb|AC138311.3| Mus musculus BAC clone RP23-61L14 from chromosome 7, complete sequence Length = 181340 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 agtttgtcttgacattaca 111 ||||||||||||||||||| Sbjct: 26364 agtttgtcttgacattaca 26382
>emb|AL445989.17| Human DNA sequence from clone RP11-473M10 on chromosome 13 Contains two novel genes and a pseudogene similar to part of olfactory receptor proteins, complete sequence Length = 163218 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 154790 aatacatttcatcatatta 154772
>emb|AL445238.12| Human DNA sequence from clone RP11-394A14 on chromosome 13 Contains a protein phosphatase 1, regulatory (inhibitor) subunit 2 (PPP1R2) pseudogene, a novel gene and an olfactory receptor pseudogene, complete sequence Length = 174801 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 64416 aatacatttcatcatatta 64434
>emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chromosome 13q14.11-14.3 Contains a protein phosphatase 1 regulatory (inhibitor) subunit 2 (PPP1R2) (IPP2) pseudogene, an olfactory receptor pseudogene, the gene for a novel protein similar to COX17 homolog cytochrome c oxidase assembly protein (yeast) (COX17) and a FK506 binding protein 1A 12kDa (FKBP1A) pseudogene and two novel genes, complete sequence Length = 116524 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 57923 aatacatttcatcatatta 57941
>gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, complete sequence Length = 157029 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 tcgatatctaaactatcat 132 ||||||||||||||||||| Sbjct: 38751 tcgatatctaaactatcat 38733
>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence Length = 208407 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gagtagcgagtttgtcttg 103 ||||||||||||||||||| Sbjct: 71030 gagtagcgagtttgtcttg 71012
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 aagagggttgcggtcacga 158 ||||||||||||||||||| Sbjct: 2017932 aagagggttgcggtcacga 2017950
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 taaaataccgaaccaagtt 59 ||||||||||||||||||| Sbjct: 77087 taaaataccgaaccaagtt 77069
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gcgagtttgtcttgacatt 108 ||||||||||||||||||| Sbjct: 5861572 gcgagtttgtcttgacatt 5861590
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tacatttcatcatattagt 31 ||||||||||||||||||| Sbjct: 10154750 tacatttcatcatattagt 10154768
>gb|AC102926.14| Mus musculus chromosome 3, clone RP24-237D17, complete sequence Length = 177195 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 tgtcttgacattacaagtc 115 ||||||||||||||||||| Sbjct: 88511 tgtcttgacattacaagtc 88529
>gb|AC108068.3| Homo sapiens BAC clone RP11-574H22 from 2, complete sequence Length = 79667 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 55485 aatacatttcatcatatta 55467
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tacatttcatcatattagt 31 ||||||||||||||||||| Sbjct: 102219 tacatttcatcatattagt 102237
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tacatttcatcatattagt 31 ||||||||||||||||||| Sbjct: 20064 tacatttcatcatattagt 20082
>dbj|AK118373.1| Arabidopsis thaliana At5g60930 mRNA for putative microtubule-associated motor, complete cds, clone: RAFL19-64-A22 Length = 2242 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gaaccaagttagaacatta 68 ||||||||||||||||||| Sbjct: 751 gaaccaagttagaacatta 769
>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3 Length = 61634 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 gaaccaagttagaacatta 68 ||||||||||||||||||| Sbjct: 27737 gaaccaagttagaacatta 27719
>dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full insert sequence Length = 4316 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 gcgagtttgtcttgacatt 108 ||||||||||||||||||| Sbjct: 1611 gcgagtttgtcttgacatt 1629
>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence Length = 226595 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 60 agaacattacaagtctcgagacc 82 ||||||||||||| ||||||||| Sbjct: 68251 agaacattacaagactcgagacc 68273
>emb|CR855311.15| Zebrafish DNA sequence from clone DKEY-97I18 in linkage group 16, complete sequence Length = 161379 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 106375 aatacatttcatcatatta 106357
>gb|AC107835.8| Mus musculus chromosome 8, clone RP23-267M21, complete sequence Length = 179297 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gagtagcgagtttgtcttg 103 ||||||||||||||||||| Sbjct: 8149 gagtagcgagtttgtcttg 8167
>gb|AF013140.1|AF013140 Stagnicola caperata internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 1178 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 cgagaccgcgagtagcgag 94 ||||||||||||||||||| Sbjct: 1078 cgagaccgcgagtagcgag 1060
>gb|AF013139.1|AF013139 Stagnicola caperata internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 1177 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 cgagaccgcgagtagcgag 94 ||||||||||||||||||| Sbjct: 1077 cgagaccgcgagtagcgag 1059
>emb|AL929221.6| Mouse DNA sequence from clone RP23-431D4 on chromosome 2, complete sequence Length = 160170 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aatacatttcatcatatta 29 ||||||||||||||||||| Sbjct: 54196 aatacatttcatcatatta 54214
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tacatttcatcatattagt 31 ||||||||||||||||||| Sbjct: 79349 tacatttcatcatattagt 79367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,078,850 Number of Sequences: 3902068 Number of extensions: 1078850 Number of successful extensions: 59985 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59874 Number of HSP's gapped (non-prelim): 110 length of query: 164 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 142 effective length of database: 17,147,199,772 effective search space: 2434902367624 effective search space used: 2434902367624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)