ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast34e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475238.1| Oryza sativa (japonica cultivar-group), predic... 88 2e-14
2gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 88 2e-14
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AK107746.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
5ref|XM_463543.1| Oryza sativa (japonica cultivar-group), predic... 72 1e-09
6gb|AY742218.1| Saccharum officinarum NAC23 mRNA, complete cds 72 1e-09
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
8gb|AF254558.1|AF254558 Oryza sativa NAC6 (NAC6) gene, complete cds 72 1e-09
9dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
10dbj|AK068392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
11dbj|AB028185.1| Oryza sativa mRNA for OsNAC6 protein, complete cds 72 1e-09
12gb|AY109519.1| Zea mays CL5798_1 mRNA sequence 54 3e-04
13emb|AL008629.9|HS197O17 Human DNA sequence from clone RP1-197O17... 46 0.085
14ref|XM_537282.2| PREDICTED: Canis familiaris estrogen-regulated ... 44 0.33
15emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chr... 44 0.33
16emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chr... 44 0.33
17gb|BT016541.1| Zea mays clone Contig374 mRNA sequence 42 1.3
18gb|AC108853.7| Mus musculus chromosome 8, clone RP24-87L12, comp... 42 1.3
19gb|AC158214.4| Mus musculus chromosome 7, clone RP24-208N15, com... 42 1.3
20gb|DQ178995.1| Streptomyces clavuligerus putative zinc-binding c... 42 1.3
21gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, comp... 42 1.3
22gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, com... 42 1.3
23emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chro... 42 1.3
24emb|CR859357.1| Pongo pygmaeus mRNA; cDNA DKFZp469N1320 (from cl... 42 1.3
25gb|AE012169.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.3
26gb|AC027131.6| Homo sapiens chromosome 16 clone RP11-317I8, comp... 42 1.3
27gb|AC026397.4| Homo sapiens chromosome 16 clone CTA-162C2, compl... 42 1.3
28gb|AC091060.10| Homo sapiens chromosome 18, clone RP11-723J4, co... 42 1.3
29gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.3
30gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, comp... 42 1.3
31gb|U41060.2|HSU41060 Homo sapiens estrogen regulated LIV-1 prote... 42 1.3
32gb|AC007279.4| Homo sapiens BAC clone RP11-309N8 from 2, complet... 42 1.3
33ref|NM_012319.2| Homo sapiens solute carrier family 39 (zinc tra... 42 1.3
34emb|AM181327.1| Zea mays mRNA for putative glycosyltransferase (... 42 1.3
35gb|AC004638.1|HUAC004638 Homo sapiens Chromosome 16 BAC clone CI... 42 1.3
36ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
37gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 5.2
38gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, com... 40 5.2
39gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence 40 5.2
40gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
41ref|XM_983668.1| PREDICTED: Mus musculus similar to ribosomal pr... 40 5.2
42gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.2
43gb|AY392418.1|AY392417S2 Streptomyces clavuligerus plasmid pSCL2... 40 5.2
44emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chr... 40 5.2
45gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.2
46gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.2
47emb|AL096816.12|HSDJ47M23 Human DNA sequence from clone RP1-47M2... 40 5.2
48gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.2
49dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.2
50gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Can... 40 5.2
51dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 5.2
52gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.2
53dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
54dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
55gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Can... 40 5.2
56dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
57dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
58dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
59emb|AL449963.2|HS399M15 Homo sapiens chromosome 9 BAC RP11-399M1... 40 5.2
60dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
61gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.2 
>ref|XM_475238.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 969

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                               
Query: 255 tcagaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgccg 306
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 969 tcagaacggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 918



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 348 ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 834 ggcgaacgtgcgctcccactcggcgatcttgggctggctctgca 791
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>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092E21, complete sequence
          Length = 132649

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                 
Query: 255   tcagaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgccg 306
             |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 79113 tcagaacggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 79062



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 348   ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
             ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 78978 ggcgaacgtgcgctcccactcggcgatcttgggctggctctgca 78935



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 160   cgatagattccggcggctcgcccgagtcaccccg 193
             |||| |||||| |||||||||||||| |||||||
Sbjct: 79204 cgatcgattccagcggctcgcccgagccaccccg 79171
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                    
Query: 255      tcagaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgccg 306
                |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20535634 tcagaacggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 20535583



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 348      ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
                ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 20535499 ggcgaacgtgcgctcccactcggcgatcttgggctggctctgca 20535456



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 160      cgatagattccggcggctcgcccgagtcaccccg 193
                |||| |||||| |||||||||||||| |||||||
Sbjct: 20535725 cgatcgattccagcggctcgcccgagccaccccg 20535692
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>dbj|AK107746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H04, full
           insert sequence
          Length = 841

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                               
Query: 255 tcagaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgccg 306
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tcagaacggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 510



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 348 ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 426 ggcgaacgtgcgctcccactcggcgatcttgggctggctctgca 383



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 160 cgatagattccggcggctcgcccgagtcaccccg 193
           |||| |||||| |||||||||||||| |||||||
Sbjct: 652 cgatcgattccagcggctcgcccgagccaccccg 619
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>ref|XM_463543.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                           
Query: 257 agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
           |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 910 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 863



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 348 ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 780 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 737
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>gb|AY742218.1| Saccharum officinarum NAC23 mRNA, complete cds
          Length = 891

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 257 agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgccggc 308
           |||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 889 agaacggcttgccccagtacatgaggatgtcctgcagcagcgggtcgccggc 838



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 345 ggaggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           ||||||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 783 ggaggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 737
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 257      agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
                |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 38392762 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 38392809



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 348      ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
                |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 38392892 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 38392935
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>gb|AF254558.1|AF254558 Oryza sativa NAC6 (NAC6) gene, complete cds
          Length = 4817

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 257  agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
            |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 4020 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 3973



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 348  ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
            |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 3890 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 3847
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>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 257    agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
              |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 153587 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 153634



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 348    ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
              |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 153717 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 153760
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>dbj|AK068392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149P14, full
            insert sequence
          Length = 1529

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 257  agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
            |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1021 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 974



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 348 ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 891 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 848
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>dbj|AB028185.1| Oryza sativa mRNA for OsNAC6 protein, complete cds
          Length = 1423

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 257  agaaaggcttgccccagtacatgaggatgtcttggaggagcgggtcgc 304
            |||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1021 agaatggcttgccccagtacatgaggatgtcctggaggagggggtcgc 974



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 348 ggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           |||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 891 ggcgaaggtgcgctcccactcgctgatcttgggctggctctgca 848
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>gb|AY109519.1| Zea mays CL5798_1 mRNA sequence
          Length = 1022

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 345 ggaggcgaacgttcgctcccagtcggagatcttgggctggctctgca 391
           ||||||||| || |||||||| |||  ||||||||||||||||||||
Sbjct: 630 ggaggcgaaggtccgctcccactcgctgatcttgggctggctctgca 676



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 257 agaaaggcttgccccagtacatgaggatgtc 287
           |||| ||||||||||||||||||||||||||
Sbjct: 527 agaacggcttgccccagtacatgaggatgtc 557
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>emb|AL008629.9|HS197O17 Human DNA sequence from clone RP1-197O17 on chromosome Xq25-26.3
             Contains a pseudogene similar to part of SMT3 suppressor
             of mif two 3 (yeast), the 5' end of gene LOC286467 and a
             myofibrillogenesis regulator 1 (MR-1) (FKSG19) pseudogene,
             complete sequence
          Length = 161812

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 24    tatacaccatgaccaagtacagt 46
             |||||||||||||||||||||||
Sbjct: 71544 tatacaccatgaccaagtacagt 71522
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>ref|XM_537282.2| PREDICTED: Canis familiaris estrogen-regulated LIV-1 protein
           (LIV-1), mRNA
          Length = 2299

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 17  aaatccatatacaccatgacca 38
           ||||||||||||||||||||||
Sbjct: 269 aaatccatatacaccatgacca 290
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>emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chromosome 6q16.2-21 Contains
              part of the C6orf210 gene for chromosome 6 open reading
              frame 210, complete sequence
          Length = 130146

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 25     atacaccatgaccaagtacagt 46
              ||||||||||||||||||||||
Sbjct: 119174 atacaccatgaccaagtacagt 119195
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>emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chromosome 9 Contains the
             3' end of the ADAMTSL1 gene for ADAMTS-like (ADAMTSR1,
             MGC40139) and a ras-related protein family pseudogene,
             complete sequence
          Length = 163163

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    atacaccatgaccaagtacagt 46
             ||||||||||||||||||||||
Sbjct: 39644 atacaccatgaccaagtacagt 39623
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>gb|BT016541.1| Zea mays clone Contig374 mRNA sequence
          Length = 1664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 tcccagtcggagatcttgggc 381
           |||||||||||||||||||||
Sbjct: 339 tcccagtcggagatcttgggc 319
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>gb|AC108853.7| Mus musculus chromosome 8, clone RP24-87L12, complete sequence
          Length = 171410

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tatacaccatgaccaagtaca 44
             |||||||||||||||||||||
Sbjct: 29537 tatacaccatgaccaagtaca 29557
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>gb|AC158214.4| Mus musculus chromosome 7, clone RP24-208N15, complete sequence
          Length = 175320

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   gccccagtacatgaggatgtc 287
             |||||||||||||||||||||
Sbjct: 34529 gccccagtacatgaggatgtc 34509
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>gb|DQ178995.1| Streptomyces clavuligerus putative zinc-binding carboxypeptidase
           (zbcp) gene, partial cds; and glyceraldehyde-3-phosphate
           dehydrogenase (gap1) gene, complete cds
          Length = 1626

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 300 gtcgccggccggcagccccgc 320
           |||||||||||||||||||||
Sbjct: 138 gtcgccggccggcagccccgc 158
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>gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, complete sequence
          Length = 213363

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    tatacaccatgaccaagtaca 44
             |||||||||||||||||||||
Sbjct: 39594 tatacaccatgaccaagtaca 39574
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>gb|AC101980.8| Mus musculus chromosome 7, clone RP24-339E15, complete sequence
          Length = 219739

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   gccccagtacatgaggatgtc 287
             |||||||||||||||||||||
Sbjct: 37526 gccccagtacatgaggatgtc 37546
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>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete
              sequence
          Length = 155196

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    cagtacatgaggatgtcttgg 291
              |||||||||||||||||||||
Sbjct: 141014 cagtacatgaggatgtcttgg 141034
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>emb|CR859357.1| Pongo pygmaeus mRNA; cDNA DKFZp469N1320 (from clone DKFZp469N1320)
          Length = 2968

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 18  aatccatatacaccatgacca 38
           |||||||||||||||||||||
Sbjct: 557 aatccatatacaccatgacca 577
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>gb|AE012169.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 77 of
             460 of the complete genome
          Length = 13011

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   agcgggtcgccggccggcagc 315
             |||||||||||||||||||||
Sbjct: 12324 agcgggtcgccggccggcagc 12344
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>gb|AC027131.6| Homo sapiens chromosome 16 clone RP11-317I8, complete sequence
          Length = 206102

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 304 ccggccggcagccccgccgcc 324
           |||||||||||||||||||||
Sbjct: 645 ccggccggcagccccgccgcc 665
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>gb|AC026397.4| Homo sapiens chromosome 16 clone CTA-162C2, complete sequence
          Length = 124998

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   ccggccggcagccccgccgcc 324
             |||||||||||||||||||||
Sbjct: 45095 ccggccggcagccccgccgcc 45115
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>gb|AC091060.10| Homo sapiens chromosome 18, clone RP11-723J4, complete sequence
          Length = 221941

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     aatccatatacaccatgacca 38
              |||||||||||||||||||||
Sbjct: 187100 aatccatatacaccatgacca 187080
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 295     agcgggtcgccggccggcagc 315
               |||||||||||||||||||||
Sbjct: 4184274 agcgggtcgccggccggcagc 4184254
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>gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, complete sequence
          Length = 170691

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   ccggccggcagccccgccgcc 324
             |||||||||||||||||||||
Sbjct: 70978 ccggccggcagccccgccgcc 70998
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>gb|U41060.2|HSU41060 Homo sapiens estrogen regulated LIV-1 protein (LIV-1) mRNA,
           complete cds
          Length = 2744

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 18  aatccatatacaccatgacca 38
           |||||||||||||||||||||
Sbjct: 404 aatccatatacaccatgacca 424
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>gb|AC007279.4| Homo sapiens BAC clone RP11-309N8 from 2, complete sequence
          Length = 138270

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    tatacaccatgaccaagtaca 44
             |||||||||||||||||||||
Sbjct: 45320 tatacaccatgaccaagtaca 45300
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>ref|NM_012319.2| Homo sapiens solute carrier family 39 (zinc transporter), member 6
           (SLC39A6), mRNA
          Length = 2744

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 18  aatccatatacaccatgacca 38
           |||||||||||||||||||||
Sbjct: 404 aatccatatacaccatgacca 424
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>emb|AM181327.1| Zea mays mRNA for putative glycosyltransferase (x34.2 gene)
          Length = 2130

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 tcccagtcggagatcttgggc 381
           |||||||||||||||||||||
Sbjct: 820 tcccagtcggagatcttgggc 800
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>gb|AC004638.1|HUAC004638 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-116A10, complete
             sequence
          Length = 124645

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   ccggccggcagccccgccgcc 324
             |||||||||||||||||||||
Sbjct: 45097 ccggccggcagccccgccgcc 45117
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>ref|XM_466075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 tcccagtcggagatcttggg 380
           ||||||||||||||||||||
Sbjct: 743 tcccagtcggagatcttggg 724
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    tgaggatgtcttggaggagc 297
              ||||||||||||||||||||
Sbjct: 361614 tgaggatgtcttggaggagc 361633
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>gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, complete sequence
          Length = 230772

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 294    gagcgggtcgccggccggcagccccgcc 321
              ||||||||||||||||||  ||||||||
Sbjct: 148477 gagcgggtcgccggccggtggccccgcc 148450
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>gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence
          Length = 141881

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gggctcccgcgtctcatcgc 95
             ||||||||||||||||||||
Sbjct: 79487 gggctcccgcgtctcatcgc 79468
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 361      tcccagtcggagatcttggg 380
                ||||||||||||||||||||
Sbjct: 10520650 tcccagtcggagatcttggg 10520669
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>ref|XM_983668.1| PREDICTED: Mus musculus similar to ribosomal protein L31
           (LOC675618), mRNA
          Length = 1686

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 294 gagcgggtcgccggccggcagccccgcc 321
           ||||||||||||||||||  ||||||||
Sbjct: 446 gagcgggtcgccggccggtggccccgcc 419
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     ctacgagtatctgctgtcga 162
               ||||||||||||||||||||
Sbjct: 3461499 ctacgagtatctgctgtcga 3461480
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>gb|AY392418.1|AY392417S2 Streptomyces clavuligerus plasmid pSCL2 clone contig7.207-II, partial
             sequence
          Length = 15013

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   cgggtcgccggccggcagcc 316
             ||||||||||||||||||||
Sbjct: 12650 cgggtcgccggccggcagcc 12631
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>emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chromosome 10, complete
             sequence
          Length = 161933

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atatacaccatgaccaagta 42
             ||||||||||||||||||||
Sbjct: 25878 atatacaccatgaccaagta 25859
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    cgccggccggcagccccgcc 321
              ||||||||||||||||||||
Sbjct: 573247 cgccggccggcagccccgcc 573228
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tcgccggccggcagccccgc 320
              ||||||||||||||||||||
Sbjct: 946392 tcgccggccggcagccccgc 946411
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>emb|AL096816.12|HSDJ47M23 Human DNA sequence from clone RP1-47M23 on chromosome 6q16.2-21
            Contains the 3' end of a novel gene (FLJ00197, novel SAM
            domain (Sterile alpha motif) containing protein gene),
            the 3' end of another novel gene and a CpG island,
            complete sequence
          Length = 129320

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   atatacaccatgaccaagta 42
            ||||||||||||||||||||
Sbjct: 2378 atatacaccatgaccaagta 2359
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>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   tcccagtcggagatcttggg 380
             ||||||||||||||||||||
Sbjct: 76463 tcccagtcggagatcttggg 76482
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     agcgggtcgccggccggcag 314
               ||||||||||||||||||||
Sbjct: 4091625 agcgggtcgccggccggcag 4091606
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>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181207

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     atatacaccatgaccaagta 42
              ||||||||||||||||||||
Sbjct: 125053 atatacaccatgaccaagta 125072
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      tcgccgccgtccgtgactcc 111
               ||||||||||||||||||||
Sbjct: 2031041 tcgccgccgtccgtgactcc 2031060
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    gcccaaaccacacgtacagc 235
              ||||||||||||||||||||
Sbjct: 403677 gcccaaaccacacgtacagc 403658
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 361      tcccagtcggagatcttggg 380
                ||||||||||||||||||||
Sbjct: 10518751 tcccagtcggagatcttggg 10518770
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 361      tcccagtcggagatcttggg 380
                ||||||||||||||||||||
Sbjct: 19472236 tcccagtcggagatcttggg 19472255
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>gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191463

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    atatacaccatgaccaagta 42
             ||||||||||||||||||||
Sbjct: 99189 atatacaccatgaccaagta 99208
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476H10
          Length = 151703

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   tcccagtcggagatcttggg 380
             ||||||||||||||||||||
Sbjct: 89763 tcccagtcggagatcttggg 89782
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>dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D08, full
           insert sequence
          Length = 2492

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 tcccagtcggagatcttggg 380
           ||||||||||||||||||||
Sbjct: 969 tcccagtcggagatcttggg 988
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>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full
           insert sequence
          Length = 1910

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 tcccagtcggagatcttggg 380
           ||||||||||||||||||||
Sbjct: 743 tcccagtcggagatcttggg 724
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>emb|AL449963.2|HS399M15 Homo sapiens chromosome 9 BAC RP11-399M15, complete sequence
          Length = 213216

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     atacaccatgaccaagtaca 44
              ||||||||||||||||||||
Sbjct: 160383 atacaccatgaccaagtaca 160364
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>dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G06, full
           insert sequence
          Length = 1245

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 tcccagtcggagatcttggg 380
           ||||||||||||||||||||
Sbjct: 51  tcccagtcggagatcttggg 32
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     agcgggtcgccggccggcag 314
               ||||||||||||||||||||
Sbjct: 4096224 agcgggtcgccggccggcag 4096205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,575,814
Number of Sequences: 3902068
Number of extensions: 2575814
Number of successful extensions: 69511
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69078
Number of HSP's gapped (non-prelim): 433
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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