ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast34c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 36 8.2
2gb|AY364316.1| Gordonia sputi catalase gene, partial cds 36 8.2
3gb|AF531953.1| Drosophila yakuba CG9259 mRNA, partial cds 36 8.2
4dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 36 8.2
5gb|AE005078.1| Halobacterium sp. NRC-1 section 109 of 170 of the... 36 8.2

>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    caaattcttgtccgcgag 35
             ||||||||||||||||||
Sbjct: 12467 caaattcttgtccgcgag 12484



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>gb|AY364316.1| Gordonia sputi catalase gene, partial cds
          Length = 264

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 31  gcgagccgaatccgtcca 48
           ||||||||||||||||||
Sbjct: 119 gcgagccgaatccgtcca 102



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>gb|AF531953.1| Drosophila yakuba CG9259 mRNA, partial cds
          Length = 1263

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 16  aacaaattcttgtccgcg 33
           ||||||||||||||||||
Sbjct: 380 aacaaattcttgtccgcg 363



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 8       cagcccgaaacaaattct 25
               ||||||||||||||||||
Sbjct: 2487245 cagcccgaaacaaattct 2487262



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>gb|AE005078.1| Halobacterium sp. NRC-1 section 109 of 170 of the complete genome
          Length = 11449

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    gccgaatccgtccaggag 52
             ||||||||||||||||||
Sbjct: 10304 gccgaatccgtccaggag 10287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,061
Number of Sequences: 3902068
Number of extensions: 280061
Number of successful extensions: 14462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14452
Number of HSP's gapped (non-prelim): 10
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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