ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast34c05 |
|---|---|
| Clone Library Name | barley_pub |
>NRK1_SCHPO (Q9C0W1) Probable nicotinamide riboside kinase 1 (EC 2.7.1.-)| Length = 230 Score = 33.5 bits (75), Expect = 0.13 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 11/78 (14%) Frame = +1 Query: 178 SGNRSSGKSVRCQELTAIAETNQLRLH-----------PLQCCRTDWNNARGCDQSINRN 324 SG SGKS CQ L AI E + L +H P++ DW+ C +S+N Sbjct: 11 SGASCSGKSTLCQLLHAIFEGSSL-VHEDDFYKTDAEIPVKNGIADWD----CQESLNL- 64 Query: 325 IC*VNRDDAFLQNLHGVR 378 DAFL+NLH +R Sbjct: 65 -------DAFLENLHYIR 75
>YQK4_CAEEL (Q09288) Hypothetical protein C56G2.4 precursor| Length = 538 Score = 31.2 bits (69), Expect = 0.63 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%) Frame = -3 Query: 307 GHILW-----HYSNQSCSTGEGVNEADWFPLWP*VPDSGHSFL 194 GH+ W +N + + G G+ +AD+ PL P P + HS+L Sbjct: 372 GHLHWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYL 414
>YBW4_SCHPO (O94662) Hypothetical protein C651.04 in chromosome II| Length = 237 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 4/28 (14%) Frame = +1 Query: 130 VQLEFTRSKKK----HKIPSSGNRSSGK 201 ++L +TRSK+K HK+PSS +R SG+ Sbjct: 142 IKLVYTRSKRKSARKHKVPSSFHRFSGR 169
>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1302 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 36 SEYCTEIVNCLIKGVITMAAKLCSCFEYRCCCPTGVHSV 152 S +C +I C + GV L + YRC CP G HS+ Sbjct: 349 STHCQDINECAMPGVCRHGDCLNNPGSYRCVCPPG-HSL 386
>YHG9_YEAST (P38758) Uncharacterized protein YHR009C| Length = 523 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +3 Query: 96 KLCSCFEYRCCCPTGVHSVKKETQNSQLW*SEFRKECPLSGTHGHS 233 KL + F P ++ +++ + W S+ K+CP+SG HS Sbjct: 316 KLGTIFNDENAKPIEINDIQQIVLSMGPWTSKILKDCPISGLRAHS 361
>PFP_PROFR (P29495) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| (EC 2.7.1.90) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) Length = 403 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Frame = -1 Query: 312 ALVTSSGIIPISPAALERV*---------TKLIGFRYGRE-FLTADTLS*TPITRA 175 AL+T+ G P +A+ + T LIG+RYG E L D+L +P RA Sbjct: 5 ALLTAGGFAPCLSSAIAELIKRYTEVSPETTLIGYRYGYEGLLKGDSLEFSPAVRA 60
>DNAA_LEGPL (Q5X0L8) Chromosomal replication initiator protein dnaA| Length = 452 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 360 LEEGIIPVNSTDVPIDALVTSSGIIPISPAALERV 256 +E G PV + D P + +VTSS P+ A + V Sbjct: 76 IEVGSKPVEAVDTPAETIVTSSSTAPLKSAPKKAV 110
>DNAA_LEGPH (Q5ZZK8) Chromosomal replication initiator protein dnaA| Length = 452 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 360 LEEGIIPVNSTDVPIDALVTSSGIIPISPAALERV 256 +E G PV + D P + +VTSS P+ A + V Sbjct: 76 IEVGSKPVEAVDTPAETIVTSSSTAPLKSAPKKAV 110
>DNAA_LEGPA (Q5X990) Chromosomal replication initiator protein dnaA| Length = 452 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -1 Query: 360 LEEGIIPVNSTDVPIDALVTSSGIIPISPAALERV 256 +E G PV + D P + +VTSS P+ A + V Sbjct: 76 IEVGSKPVEAVDTPAETIVTSSSTAPLKSAPKKAV 110
>Y422_MYCGE (P47661) Hypothetical protein MG422| Length = 835 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -3 Query: 172 EFCVSFLTE*TPVGQQHLYSKHEQSLAAIVMTPLIKQLTISVQYS 38 E V+ L E + Q H KH S + ++ + KQ +VQY+ Sbjct: 428 EKLVNELKENILLNQNHYRGKHNNSFSVLIQKTVFKQFIDTVQYA 472
>DDX21_MOUSE (Q9JIK5) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA| helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD box protein 21) Length = 851 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +3 Query: 33 ISEYCTEIVNCLIKGVITMAAKLCSCFEYRCCCPTGVHSVKKETQNSQLW*SEFRKEC-- 206 + E E ++ +KG++ + KL CF+ R T + +++ QL + + E Sbjct: 729 LKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDSRRWQLTVATEQPELEG 788 Query: 207 PLSGTHGHSGNQSAS 251 P G G G + S Sbjct: 789 PQDGYRGRMGQRDGS 803
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 36 SEYCTEIVNCLIKGVITMAAKLCSCFEYRCCCPTGVHSV 152 S +C +I C + G + L + YRC CP G HS+ Sbjct: 347 STHCQDINECAMPGNVCHGDCLNNPGSYRCVCPPG-HSL 384
>CEND1_MOUSE (Q8BZ05) Centaurin-delta 1 (Cnt-d1)| Length = 1703 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = +3 Query: 201 ECPLSGTHGHSGNQSA--SFTPSPVLQ 275 +CP SGTH +G SF P+P Q Sbjct: 219 DCPTSGTHSGNGTNGVLESFPPTPFFQ 245
>FBN2_HUMAN (P35556) Fibrillin-2 precursor| Length = 2911 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +3 Query: 42 YCTEIVNCLIKGVITMAAKLCSCFEYRCCCPTGV 143 YCT++ C G+ + S +RC CP G+ Sbjct: 654 YCTDVDECQTPGICMNGHCINSEGSFRCDCPPGL 687
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = +1 Query: 139 EFTRSKKKHKIP--SSGNRSSGKSVRCQELTAIAETNQL 249 EF R+K+KHK+P SS +++ G +V E A E + + Sbjct: 987 EFGRTKEKHKLPYGSSLSKADGDAVTAGETVANWEAHTM 1025
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = +1 Query: 139 EFTRSKKKHKIP--SSGNRSSGKSVRCQELTAIAETNQL 249 EF R+K+KHK+P SS +++ G +V E A E + + Sbjct: 987 EFGRTKEKHKLPYGSSLSKADGDAVTAGETVANWEAHTM 1025
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -3 Query: 235 PLWP*VPDSGHSFLNS 188 PLWP VPD HS L S Sbjct: 657 PLWPSVPDPAHSSLGS 672
>HBD_DEIRA (Q9RVG1) Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)| (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) Length = 278 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -1 Query: 354 EGIIPVNSTDVPIDALVTSSG 292 EGI+ N++ +PI AL T+SG Sbjct: 107 EGILASNTSSIPITALATASG 127
>GRP1_HORVU (P17816) Glycine-rich cell wall structural protein precursor| Length = 200 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -3 Query: 364 NSGGRHHPG*LNRCSY*CSGHILWHYSNQSCSTGEGVNE 248 + GG H G RC + C GH H+ + C+ + V E Sbjct: 161 HGGGGGHGG--GRCKWGCCGHGFLHHGCRCCARADEVPE 197 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,223,973 Number of Sequences: 219361 Number of extensions: 1128799 Number of successful extensions: 3088 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3087 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
