ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast33f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472786.1| Oryza sativa (japonica cultivar-group), predic... 111 9e-22
2emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 111 9e-22
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 9e-22
4tpe|BN000584.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 111 9e-22
5emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 111 9e-22
6gb|AY111409.1| Zea mays CL6947_1 mRNA sequence 100 3e-18
7gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the ... 46 0.045
8dbj|AK110559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.18
9emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 42 0.70
10gb|AY109396.1| Zea mays CL5154_1 mRNA sequence 42 0.70
11ref|NM_032482.1| Homo sapiens DOT1-like, histone H3 methyltransf... 40 2.8
12gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome... 40 2.8
13gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, com... 40 2.8
14emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C1... 40 2.8
15gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, c... 40 2.8
16gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome... 40 2.8
17gb|AF509504.1| Homo sapiens DOT1-like protein (DOT1L) mRNA, comp... 40 2.8
18dbj|AK095280.1| Homo sapiens cDNA FLJ37961 fis, clone CTONG2009643 40 2.8
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
20dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome ... 40 2.8
21dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
22dbj|AK104754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
23dbj|AK064918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
24tpe|BN000619.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 2.8
25gb|AC004490.1|AC004490 Homo sapiens chromosome 19, cosmid R29381... 40 2.8
26gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 2.8
27dbj|AB058717.1| Homo sapiens mRNA for KIAA1814 protein, partial cds 40 2.8
28dbj|AK074120.1| Homo sapiens mRNA for FLJ00192 protein 40 2.8

>ref|XM_472786.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1008

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                        
Query: 115  gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174
            ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| |||
Sbjct: 1005 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 946

                                                
Query: 175  gagcttctgcatggccttggcgaagtcctggaagaa 210
            |||||||||||| |||  ||||||||||| ||||||
Sbjct: 945  gagcttctgcatcgccgcggcgaagtcctcgaagaa 910



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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
              complete sequence
          Length = 139418

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                          
Query: 115    gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174
              ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| |||
Sbjct: 100927 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 100986

                                                  
Query: 175    gagcttctgcatggccttggcgaagtcctggaagaa 210
              |||||||||||| |||  ||||||||||| ||||||
Sbjct: 100987 gagcttctgcatcgccgcggcgaagtcctcgaagaa 101022



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                            
Query: 115      gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174
                ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| |||
Sbjct: 23210735 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 23210794

                                                    
Query: 175      gagcttctgcatggccttggcgaagtcctggaagaa 210
                |||||||||||| |||  ||||||||||| ||||||
Sbjct: 23210795 gagcttctgcatcgccgcggcgaagtcctcgaagaa 23210830



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>tpe|BN000584.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx55 gene for
            class III peroxidase 55 precursor, exon 1
          Length = 1008

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                        
Query: 115  gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174
            ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| |||
Sbjct: 1005 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 946

                                                
Query: 175  gagcttctgcatggccttggcgaagtcctggaagaa 210
            |||||||||||| |||  ||||||||||| ||||||
Sbjct: 945  gagcttctgcatcgccgcggcgaagtcctcgaagaa 910



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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score =  111 bits (56), Expect = 9e-22
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                         
Query: 115   gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174
             ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| |||
Sbjct: 48888 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 48947

                                                 
Query: 175   gagcttctgcatggccttggcgaagtcctggaagaa 210
             |||||||||||| |||  ||||||||||| ||||||
Sbjct: 48948 gagcttctgcatcgccgcggcgaagtcctcgaagaa 48983



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>gb|AY111409.1| Zea mays CL6947_1 mRNA sequence
          Length = 490

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                       
Query: 131 cgcctgacgacgccctgccgccccgtcttgacgccgacggtgccgagcttctgcatggcc 190
           ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| || 
Sbjct: 193 cgcctgacgacgccctggcgccccgtcttgacgccgacggcgccgagcctctgcatcgcg 252

                                     
Query: 191 ttggcgaagtcctggaagaacgcggt 216
             ||||||||||| |||||| |||||
Sbjct: 253 gcggcgaagtcctcgaagaaggcggt 278



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>gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the complete genome
          Length = 14379

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 101  cgcgccggtcagtcgaggatgtc 123
            |||||||||||||||||||||||
Sbjct: 8077 cgcgccggtcagtcgaggatgtc 8055



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>dbj|AK110559.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C10, full
           insert sequence
          Length = 1032

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 171 tgccgagcttctgcatggcctt 192
           ||||||||||||||||||||||
Sbjct: 332 tgccgagcttctgcatggcctt 311



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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 7      gcaattcacaacttcattcagaaaa 31
              |||||||||||||||| ||||||||
Sbjct: 172940 gcaattcacaacttcactcagaaaa 172964



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>gb|AY109396.1| Zea mays CL5154_1 mRNA sequence
          Length = 1182

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 175 gagcttctgcatggccttggcgaag 199
           |||||||| ||||||||||||||||
Sbjct: 283 gagcttctccatggccttggcgaag 259



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>ref|NM_032482.1| Homo sapiens DOT1-like, histone H3 methyltransferase (S. cerevisiae)
            (DOT1L), mRNA
          Length = 4889

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgccgcctgacgacgccctg 147
            ||||||||||||||||||||
Sbjct: 2024 tgccgcctgacgacgccctg 2043



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>gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome 15, complete sequence
          Length = 152947

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttcacaacttcattcagaaa 30
             ||||||||||||||||||||
Sbjct: 59232 ttcacaacttcattcagaaa 59251



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>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence
          Length = 196300

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     aaaatccaatcctaataata 69
              ||||||||||||||||||||
Sbjct: 144493 aaaatccaatcctaataata 144512



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>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains a
              poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene,
              an Ig kappa chain precursor V region pseudogene, a
              pseudogene similar to part of kinase suppressor of ras
              (KSR) and four CpG islands, complete sequence
          Length = 197700

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     caaaatccaatcctaataat 68
              ||||||||||||||||||||
Sbjct: 145591 caaaatccaatcctaataat 145572



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>gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, complete sequence
          Length = 153992

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttcacaacttcattcagaaa 30
             ||||||||||||||||||||
Sbjct: 18882 ttcacaacttcattcagaaa 18901



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>gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome 15, complete sequence
          Length = 229862

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttcacaacttcattcagaaa 30
              ||||||||||||||||||||
Sbjct: 176098 ttcacaacttcattcagaaa 176117



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>gb|AF509504.1| Homo sapiens DOT1-like protein (DOT1L) mRNA, complete cds
          Length = 4889

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgccgcctgacgacgccctg 147
            ||||||||||||||||||||
Sbjct: 2024 tgccgcctgacgacgccctg 2043



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>dbj|AK095280.1| Homo sapiens cDNA FLJ37961 fis, clone CTONG2009643
          Length = 3658

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 tgccgcctgacgacgccctg 147
           ||||||||||||||||||||
Sbjct: 180 tgccgcctgacgacgccctg 199



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 153      ccgtcttgacgccgacggtgccgagctt 180
                |||||||||||||||||  |||||||||
Sbjct: 28670150 ccgtcttgacgccgacgcggccgagctt 28670123



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>dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome 1 clone:MSMg01-122K03,
             complete sequence
          Length = 173324

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aaaatccaatcctaataata 69
             ||||||||||||||||||||
Sbjct: 80522 aaaatccaatcctaataata 80541



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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0622F03
          Length = 170064

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 153   ccgtcttgacgccgacggtgccgagctt 180
             |||||||||||||||||  |||||||||
Sbjct: 70716 ccgtcttgacgccgacgcggccgagctt 70689



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>dbj|AK104754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F11, full
            insert sequence
          Length = 1523

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 153  ccgtcttgacgccgacggtgccgagctt 180
            |||||||||||||||||  |||||||||
Sbjct: 1114 ccgtcttgacgccgacgcggccgagctt 1087



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>dbj|AK064918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M23, full
            insert sequence
          Length = 1618

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 153  ccgtcttgacgccgacggtgccgagctt 180
            |||||||||||||||||  |||||||||
Sbjct: 1117 ccgtcttgacgccgacgcggccgagctt 1090



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>tpe|BN000619.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx90 gene for
            class III peroxidase 90 precursor, exons 1-4
          Length = 2690

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 153  ccgtcttgacgccgacggtgccgagctt 180
            |||||||||||||||||  |||||||||
Sbjct: 2640 ccgtcttgacgccgacgcggccgagctt 2613



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>gb|AC004490.1|AC004490 Homo sapiens chromosome 19, cosmid R29381, complete sequence
          Length = 39143

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   tgccgcctgacgacgccctg 147
             ||||||||||||||||||||
Sbjct: 35161 tgccgcctgacgacgccctg 35180



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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     agcttctgcatggccttggc 195
               ||||||||||||||||||||
Sbjct: 3147097 agcttctgcatggccttggc 3147078



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>dbj|AB058717.1| Homo sapiens mRNA for KIAA1814 protein, partial cds
          Length = 5576

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 tgccgcctgacgacgccctg 147
           ||||||||||||||||||||
Sbjct: 686 tgccgcctgacgacgccctg 705



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>dbj|AK074120.1| Homo sapiens mRNA for FLJ00192 protein
          Length = 4540

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tgccgcctgacgacgccctg 147
            ||||||||||||||||||||
Sbjct: 1689 tgccgcctgacgacgccctg 1708


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,410,965
Number of Sequences: 3902068
Number of extensions: 1410965
Number of successful extensions: 97094
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96949
Number of HSP's gapped (non-prelim): 145
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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