| Clone Name | rbast33f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 111 bits (56), Expect = 9e-22 Identities = 86/96 (89%) Strand = Plus / Minus Query: 115 gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174 ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| ||| Sbjct: 1005 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 946 Query: 175 gagcttctgcatggccttggcgaagtcctggaagaa 210 |||||||||||| ||| ||||||||||| |||||| Sbjct: 945 gagcttctgcatcgccgcggcgaagtcctcgaagaa 910
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 111 bits (56), Expect = 9e-22 Identities = 86/96 (89%) Strand = Plus / Plus Query: 115 gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174 ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| ||| Sbjct: 100927 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 100986 Query: 175 gagcttctgcatggccttggcgaagtcctggaagaa 210 |||||||||||| ||| ||||||||||| |||||| Sbjct: 100987 gagcttctgcatcgccgcggcgaagtcctcgaagaa 101022
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 9e-22 Identities = 86/96 (89%) Strand = Plus / Plus Query: 115 gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174 ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| ||| Sbjct: 23210735 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 23210794 Query: 175 gagcttctgcatggccttggcgaagtcctggaagaa 210 |||||||||||| ||| ||||||||||| |||||| Sbjct: 23210795 gagcttctgcatcgccgcggcgaagtcctcgaagaa 23210830
>tpe|BN000584.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx55 gene for class III peroxidase 55 precursor, exon 1 Length = 1008 Score = 111 bits (56), Expect = 9e-22 Identities = 86/96 (89%) Strand = Plus / Minus Query: 115 gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174 ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| ||| Sbjct: 1005 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 946 Query: 175 gagcttctgcatggccttggcgaagtcctggaagaa 210 |||||||||||| ||| ||||||||||| |||||| Sbjct: 945 gagcttctgcatcgccgcggcgaagtcctcgaagaa 910
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 111 bits (56), Expect = 9e-22 Identities = 86/96 (89%) Strand = Plus / Plus Query: 115 gaggatgtcgcactgccgcctgacgacgccctgccgccccgtcttgacgccgacggtgcc 174 ||||| |||||| |||||||||||||||||||| || || |||||||||||||||| ||| Sbjct: 48888 gaggacgtcgcagtgccgcctgacgacgccctggcggccagtcttgacgccgacggcgcc 48947 Query: 175 gagcttctgcatggccttggcgaagtcctggaagaa 210 |||||||||||| ||| ||||||||||| |||||| Sbjct: 48948 gagcttctgcatcgccgcggcgaagtcctcgaagaa 48983
>gb|AY111409.1| Zea mays CL6947_1 mRNA sequence Length = 490 Score = 99.6 bits (50), Expect = 3e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 131 cgcctgacgacgccctgccgccccgtcttgacgccgacggtgccgagcttctgcatggcc 190 ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| || Sbjct: 193 cgcctgacgacgccctggcgccccgtcttgacgccgacggcgccgagcctctgcatcgcg 252 Query: 191 ttggcgaagtcctggaagaacgcggt 216 ||||||||||| |||||| ||||| Sbjct: 253 gcggcgaagtcctcgaagaaggcggt 278
>gb|AE005003.1| Halobacterium sp. NRC-1 section 34 of 170 of the complete genome Length = 14379 Score = 46.1 bits (23), Expect = 0.045 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 cgcgccggtcagtcgaggatgtc 123 ||||||||||||||||||||||| Sbjct: 8077 cgcgccggtcagtcgaggatgtc 8055
>dbj|AK110559.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C10, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 171 tgccgagcttctgcatggcctt 192 |||||||||||||||||||||| Sbjct: 332 tgccgagcttctgcatggcctt 311
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3, complete sequence Length = 241961 Score = 42.1 bits (21), Expect = 0.70 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 gcaattcacaacttcattcagaaaa 31 |||||||||||||||| |||||||| Sbjct: 172940 gcaattcacaacttcactcagaaaa 172964
>gb|AY109396.1| Zea mays CL5154_1 mRNA sequence Length = 1182 Score = 42.1 bits (21), Expect = 0.70 Identities = 24/25 (96%) Strand = Plus / Minus Query: 175 gagcttctgcatggccttggcgaag 199 |||||||| |||||||||||||||| Sbjct: 283 gagcttctccatggccttggcgaag 259
>ref|NM_032482.1| Homo sapiens DOT1-like, histone H3 methyltransferase (S. cerevisiae) (DOT1L), mRNA Length = 4889 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 2024 tgccgcctgacgacgccctg 2043
>gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome 15, complete sequence Length = 152947 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ttcacaacttcattcagaaa 30 |||||||||||||||||||| Sbjct: 59232 ttcacaacttcattcagaaa 59251
>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence Length = 196300 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aaaatccaatcctaataata 69 |||||||||||||||||||| Sbjct: 144493 aaaatccaatcctaataata 144512
>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains a poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene, an Ig kappa chain precursor V region pseudogene, a pseudogene similar to part of kinase suppressor of ras (KSR) and four CpG islands, complete sequence Length = 197700 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 caaaatccaatcctaataat 68 |||||||||||||||||||| Sbjct: 145591 caaaatccaatcctaataat 145572
>gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, complete sequence Length = 153992 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ttcacaacttcattcagaaa 30 |||||||||||||||||||| Sbjct: 18882 ttcacaacttcattcagaaa 18901
>gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome 15, complete sequence Length = 229862 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ttcacaacttcattcagaaa 30 |||||||||||||||||||| Sbjct: 176098 ttcacaacttcattcagaaa 176117
>gb|AF509504.1| Homo sapiens DOT1-like protein (DOT1L) mRNA, complete cds Length = 4889 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 2024 tgccgcctgacgacgccctg 2043
>dbj|AK095280.1| Homo sapiens cDNA FLJ37961 fis, clone CTONG2009643 Length = 3658 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 180 tgccgcctgacgacgccctg 199
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ccgtcttgacgccgacggtgccgagctt 180 ||||||||||||||||| ||||||||| Sbjct: 28670150 ccgtcttgacgccgacgcggccgagctt 28670123
>dbj|AP007207.1| Mus musculus molossinus genomic DNA, chromosome 1 clone:MSMg01-122K03, complete sequence Length = 173324 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aaaatccaatcctaataata 69 |||||||||||||||||||| Sbjct: 80522 aaaatccaatcctaataata 80541
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ccgtcttgacgccgacggtgccgagctt 180 ||||||||||||||||| ||||||||| Sbjct: 70716 ccgtcttgacgccgacgcggccgagctt 70689
>dbj|AK104754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F11, full insert sequence Length = 1523 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ccgtcttgacgccgacggtgccgagctt 180 ||||||||||||||||| ||||||||| Sbjct: 1114 ccgtcttgacgccgacgcggccgagctt 1087
>dbj|AK064918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M23, full insert sequence Length = 1618 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ccgtcttgacgccgacggtgccgagctt 180 ||||||||||||||||| ||||||||| Sbjct: 1117 ccgtcttgacgccgacgcggccgagctt 1090
>tpe|BN000619.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx90 gene for class III peroxidase 90 precursor, exons 1-4 Length = 2690 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 ccgtcttgacgccgacggtgccgagctt 180 ||||||||||||||||| ||||||||| Sbjct: 2640 ccgtcttgacgccgacgcggccgagctt 2613
>gb|AC004490.1|AC004490 Homo sapiens chromosome 19, cosmid R29381, complete sequence Length = 39143 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 35161 tgccgcctgacgacgccctg 35180
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 agcttctgcatggccttggc 195 |||||||||||||||||||| Sbjct: 3147097 agcttctgcatggccttggc 3147078
>dbj|AB058717.1| Homo sapiens mRNA for KIAA1814 protein, partial cds Length = 5576 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 686 tgccgcctgacgacgccctg 705
>dbj|AK074120.1| Homo sapiens mRNA for FLJ00192 protein Length = 4540 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgccgcctgacgacgccctg 147 |||||||||||||||||||| Sbjct: 1689 tgccgcctgacgacgccctg 1708 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,410,965 Number of Sequences: 3902068 Number of extensions: 1410965 Number of successful extensions: 97094 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96949 Number of HSP's gapped (non-prelim): 145 length of query: 218 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 196 effective length of database: 17,147,199,772 effective search space: 3360851155312 effective search space used: 3360851155312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)