ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast33f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 66 7e-08
2gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 42 1.1
3gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chr... 42 1.1
4gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. F... 42 1.1
5gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H... 42 1.1
6emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-1... 42 1.1
7gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, co... 40 4.2
8gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, c... 40 4.2
9gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 40 4.2
10gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 40 4.2
11emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in l... 40 4.2
12emb|CR318597.4| Zebrafish DNA sequence from clone CH211-151L13 i... 40 4.2
13gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswel... 40 4.2
14gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 40 4.2
15ref|NM_167853.1| Drosophila melanogaster CG9094-RA, transcript v... 40 4.2
16gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, comple... 40 4.2
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
18gb|AC104600.5| Homo sapiens BAC clone RP11-812O13 from 2, comple... 40 4.2
19gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, comp... 40 4.2
20dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
21dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
22emb|BX119992.6| Zebrafish DNA sequence from clone CH211-225H9 in... 40 4.2
23gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 40 4.2
24emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chr... 40 4.2
25dbj|AP001818.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 4.2

>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 214  ggtagaggtgcagcggcaggcgtggcttggcgtgcaacaccagcggctt 262
            |||||||||||| ||||||||| |||| |||||||| ||||||||||||
Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggctt 1693



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>gb|DQ160197.1| Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L1) gene, complete cds
          Length = 660392

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     ggaaagatgacaacaaactta 83
              |||||||||||||||||||||
Sbjct: 656590 ggaaagatgacaacaaactta 656570



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>gb|AE010301.1| Leptospira interrogans serovar Lai str. 56601 chromosome II, complete
             sequence
          Length = 358943

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    ataatattattattactcggaatca 40
             |||||||| ||||||||||||||||
Sbjct: 20567 ataatatttttattactcggaatca 20591



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>gb|AE016824.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
             chromosome II, complete sequence
          Length = 350181

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    ataatattattattactcggaatca 40
             |||||||| ||||||||||||||||
Sbjct: 19100 ataatatttttattactcggaatca 19124



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>gb|AC004518.1|AC004518 Homo sapiens chromosome 14, BAC CITB-135H17  containing the RAD51L1
             gene, complete sequence
          Length = 123661

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    ggaaagatgacaacaaactta 83
             |||||||||||||||||||||
Sbjct: 16348 ggaaagatgacaacaaactta 16328



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>emb|AL589168.3|CNS07EG1 Human chromosome 14 DNA sequence BAC R-108B17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 149805

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     ggaaagatgacaacaaactta 83
              |||||||||||||||||||||
Sbjct: 119198 ggaaagatgacaacaaactta 119218



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>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     acttattaatggatcaatat 98
              ||||||||||||||||||||
Sbjct: 145210 acttattaatggatcaatat 145191



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>gb|AC103357.10| Mus musculus chromosome 14, clone RP24-201I14, complete sequence
          Length = 143401

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aagatgacaacaaacttatt 85
             ||||||||||||||||||||
Sbjct: 58446 aagatgacaacaaacttatt 58427



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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    catggacatgagcagtagca 137
              ||||||||||||||||||||
Sbjct: 158347 catggacatgagcagtagca 158328



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>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    catggacatgagcagtagca 137
              ||||||||||||||||||||
Sbjct: 135086 catggacatgagcagtagca 135067



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>emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in linkage group 3,
             complete sequence
          Length = 61415

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 49    tagtgtgtgtgaagggaaagatga 72
             |||||||| |||||||||||||||
Sbjct: 57230 tagtgtgtttgaagggaaagatga 57207



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>emb|CR318597.4| Zebrafish DNA sequence from clone CH211-151L13 in linkage group 21,
             complete sequence
          Length = 160229

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aaataatattattattactc 33
             ||||||||||||||||||||
Sbjct: 57149 aaataatattattattactc 57130



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>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 50    agtgtgtgtgaagggaaagatgacaaca 77
             ||||||||||  ||||||||||||||||
Sbjct: 65326 agtgtgtgtgcggggaaagatgacaaca 65353



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>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 50     agtgtgtgtgaagggaaagatgacaaca 77
              ||||||||||  ||||||||||||||||
Sbjct: 175227 agtgtgtgtgcggggaaagatgacaaca 175254



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>ref|NM_167853.1| Drosophila melanogaster CG9094-RA, transcript variant A (CG9094),
           mRNA
          Length = 1028

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 50  agtgtgtgtgaagggaaagatgacaaca 77
           ||||||||||  ||||||||||||||||
Sbjct: 332 agtgtgtgtgcggggaaagatgacaaca 359



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>gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, complete sequence
          Length = 150013

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tagggtctccctaaataata 21
              ||||||||||||||||||||
Sbjct: 128985 tagggtctccctaaataata 129004



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      gaagggaaagatgacaacaa 78
               ||||||||||||||||||||
Sbjct: 2025406 gaagggaaagatgacaacaa 2025425



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>gb|AC104600.5| Homo sapiens BAC clone RP11-812O13 from 2, complete sequence
          Length = 138969

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gtctagtgtgtgtgaaggga 65
             ||||||||||||||||||||
Sbjct: 68907 gtctagtgtgtgtgaaggga 68926



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>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aacttattaatggatcaata 97
             ||||||||||||||||||||
Sbjct: 15355 aacttattaatggatcaata 15374



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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     gaagggaaagatgacaacaa 78
              ||||||||||||||||||||
Sbjct: 154186 gaagggaaagatgacaacaa 154205



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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    gaagggaaagatgacaacaa 78
             ||||||||||||||||||||
Sbjct: 46268 gaagggaaagatgacaacaa 46287



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>emb|BX119992.6| Zebrafish DNA sequence from clone CH211-225H9 in linkage group 20,
              complete sequence
          Length = 174275

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     taaataatattattattact 32
              ||||||||||||||||||||
Sbjct: 166091 taaataatattattattact 166072



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>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
              sequence
          Length = 318699

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 50     agtgtgtgtgaagggaaagatgacaaca 77
              ||||||||||  ||||||||||||||||
Sbjct: 189874 agtgtgtgtgcggggaaagatgacaaca 189901



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>emb|AL773568.19| Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete
             sequence
          Length = 158374

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gtgtgtgaagggaaagatga 72
             ||||||||||||||||||||
Sbjct: 26126 gtgtgtgaagggaaagatga 26145



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>dbj|AP001818.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2222M9, complete
              sequence
          Length = 116321

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tagggtctccctaaataata 21
              ||||||||||||||||||||
Sbjct: 110844 tagggtctccctaaataata 110863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,910,449
Number of Sequences: 3902068
Number of extensions: 3910449
Number of successful extensions: 76794
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76729
Number of HSP's gapped (non-prelim): 65
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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