| Clone Name | rbast33e11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 42.1 bits (21), Expect = 0.53 Identities = 24/25 (96%) Strand = Plus / Minus Query: 101 aatagtatttcagaaaaaccaaaac 125 |||||||||||||||||| |||||| Sbjct: 205292 aatagtatttcagaaaaatcaaaac 205268
>emb|BX248510.3| Zebrafish DNA sequence from clone DKEY-88P24 in linkage group 10, complete sequence Length = 170386 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 tatttcagaaaaaccaaaact 126 ||||||||||||||||||||| Sbjct: 129634 tatttcagaaaaaccaaaact 129614
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 agtatttcagaaaaaccaaaactt 127 |||||||||||||||| ||||||| Sbjct: 5424 agtatttcagaaaaacaaaaactt 5401
>gb|BC044913.2| Homo sapiens MOB1, Mps One Binder kinase activator-like 1A (yeast), mRNA (cDNA clone IMAGE:5286410) Length = 3668 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 agtatttcagaaaaaccaaaactt 127 |||||||||||||||| ||||||| Sbjct: 2890 agtatttcagaaaaacaaaaactt 2867
>gb|BC038112.1| Homo sapiens MOB1, Mps One Binder kinase activator-like 1A (yeast), mRNA (cDNA clone MGC:33910 IMAGE:5264730), complete cds Length = 6956 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 agtatttcagaaaaaccaaaactt 127 |||||||||||||||| ||||||| Sbjct: 6146 agtatttcagaaaaacaaaaactt 6123
>emb|AL162039.1|HSM802554 Homo sapiens mRNA; cDNA DKFZp434M229 (from clone DKFZp434M229) Length = 3325 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 agtatttcagaaaaaccaaaactt 127 |||||||||||||||| ||||||| Sbjct: 2551 agtatttcagaaaaacaaaaactt 2528
>emb|BX571773.12| Zebrafish DNA sequence from clone DKEY-174K1 in linkage group 6, complete sequence Length = 135439 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 agaatagtatttcagaaaaa 118 |||||||||||||||||||| Sbjct: 11820 agaatagtatttcagaaaaa 11801
>dbj|AB022212.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22G18 Length = 45453 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aagaatagtatttcagaaaa 117 |||||||||||||||||||| Sbjct: 35804 aagaatagtatttcagaaaa 35785
>ref|NM_173468.2| Homo sapiens MOB1, Mps One Binder kinase activator-like 1A (yeast) (MOBKL1A), mRNA Length = 6960 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 agtatttcagaaaaaccaaaactt 127 |||||||||||||||| ||||||| Sbjct: 6187 agtatttcagaaaaacaaaaactt 6164
>emb|AL137818.4|CNS01DWP Human chromosome 14 DNA sequence BAC R-102C24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179714 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 agaatagtatttcagaaaaa 118 |||||||||||||||||||| Sbjct: 68855 agaatagtatttcagaaaaa 68836
>emb|X73942.1|BTMSINRAI B.taurus microsatellite DNA INRA192 Length = 436 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 aagaatagtatttcagaaaa 117 |||||||||||||||||||| Sbjct: 116 aagaatagtatttcagaaaa 135
>gb|AC155715.24| Mus musculus 10 BAC RP24-118H2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174860 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttcagaaaaaccaaaactt 127 |||||||||||||||||||| Sbjct: 44432 tttcagaaaaaccaaaactt 44451
>ref|NM_111501.1| Arabidopsis thaliana transferase, transferring glycosyl groups / transferase, transferring hexosyl groups AT3G06260 mRNA, complete cds Length = 1056 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 accttttcaccagcatcaa 99 ||||||||||||||||||| Sbjct: 329 accttttcaccagcatcaa 347
>gb|AC004044.1| Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete sequence Length = 98527 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 ttcagaaaaaccaaaactt 127 ||||||||||||||||||| Sbjct: 44929 ttcagaaaaaccaaaactt 44911
>ref|NM_027432.3| Mus musculus WD repeat domain 77 (Wdr77), mRNA Length = 3553 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1121 atttcagaaaaaccaaaac 1139
>gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome 13, complete sequence Length = 208096 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 193001 atttcagaaaaaccaaaac 193019
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence Length = 93478 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 accttttcaccagcatcaa 99 ||||||||||||||||||| Sbjct: 60724 accttttcaccagcatcaa 60706
>gb|AC121897.2| Mus musculus BAC clone RP24-160L24 from 3, complete sequence Length = 143234 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 4257 atttcagaaaaaccaaaac 4239
>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence Length = 108182 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 agcatcaagaatagtattt 110 ||||||||||||||||||| Sbjct: 165 agcatcaagaatagtattt 147
>gb|AC009508.3| Homo sapiens BAC clone RP11-564N1 from 7, complete sequence Length = 119414 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 agcatcaagaatagtattt 110 ||||||||||||||||||| Sbjct: 119379 agcatcaagaatagtattt 119361
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 ttcagaaaaaccaaaactt 127 ||||||||||||||||||| Sbjct: 93599 ttcagaaaaaccaaaactt 93581
>gb|BC005755.1| Mus musculus WD repeat domain 77, mRNA (cDNA clone MGC:6890 IMAGE:2654151), complete cds Length = 1958 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1076 atttcagaaaaaccaaaac 1094
>dbj|AK131608.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110007E07 product:Methylosome protein 50 (MEP50 protein) homolog [Mus musculus], full insert sequence Length = 1903 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1032 atttcagaaaaaccaaaac 1050
>dbj|AK168752.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920049M20 product:Methylosome protein 50 (MEP50 protein), full insert sequence Length = 2003 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1143 atttcagaaaaaccaaaac 1161
>dbj|AK161812.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030454H15 product:weakly similar to Methylosome protein 50 (MEP50 protein) [Mus musculus], full insert sequence Length = 4290 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1579 atttcagaaaaaccaaaac 1597
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 gacctcatcgacgagtcga 62 ||||||||||||||||||| Sbjct: 27023 gacctcatcgacgagtcga 27005
>dbj|AK163839.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130075K15 product:Methylosome protein 50 (MEP50 protein), full insert sequence Length = 2566 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1116 atttcagaaaaaccaaaac 1134
>dbj|AK168006.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730046L21 product:Methylosome protein 50 (MEP50 protein), full insert sequence Length = 1982 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1122 atttcagaaaaaccaaaac 1140
>dbj|AK169128.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920081N03 product:Methylosome protein 50 (MEP50 protein), full insert sequence Length = 1982 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1122 atttcagaaaaaccaaaac 1140
>dbj|AK032897.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720469N07 product:hypothetical G-protein beta WD-40 repeats containing protein, full insert sequence Length = 2702 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 660 atttcagaaaaaccaaaac 678
>dbj|AK050391.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730043H02 product:hypothetical G-protein beta WD-40 repeats containing protein, full insert sequence Length = 3553 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1121 atttcagaaaaaccaaaac 1139
>dbj|AK048488.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130065N08 product:hypothetical G-protein beta WD-40 repeats containing protein, full insert sequence Length = 3186 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1144 atttcagaaaaaccaaaac 1162
>dbj|AK082575.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230064P20 product:oviductal glycoprotein 1, 120kD, full insert sequence Length = 1580 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 477 atttcagaaaaaccaaaac 495
>dbj|AK078856.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030207M13 product:hypothetical Trp-Asp repeat (WD-repeat) structure containing protein, full insert sequence Length = 1940 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 1080 atttcagaaaaaccaaaac 1098
>gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191148 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 136688 atttcagaaaaaccaaaac 136706
>dbj|AK214407.1| Mus musculus cDNA, clone:Y2G0131K22, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000010278, based on BLAT search Length = 334 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 125 atttcagaaaaaccaaaac 143
>gb|AC025786.16| Mus musculus chromosome 3, clone RP23-169H9, complete sequence Length = 181293 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 atttcagaaaaaccaaaac 125 ||||||||||||||||||| Sbjct: 99648 atttcagaaaaaccaaaac 99630
>gb|AF087517.1|SEG_MMMSFSP2 Mus musculus major sperm fibrous sheath protein Pro-mAKAP82 gene, exons 2 through 6 and complete cds Length = 8254 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 taccttttcaccagcatcaagaa 102 ||||||||| ||||||||||||| Sbjct: 7945 taccttttctccagcatcaagaa 7923
>emb|Z82256.1|CEB0513 Caenorhabditis elegans Cosmid B0513, complete sequence Length = 42614 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 108 tttcagaaaaaccaaaact 126 ||||||||||||||||||| Sbjct: 10884 tttcagaaaaaccaaaact 10902
>emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, complete sequence Length = 156893 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 tagtatttcagaaaaacca 121 ||||||||||||||||||| Sbjct: 88753 tagtatttcagaaaaacca 88771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,564,996 Number of Sequences: 3902068 Number of extensions: 1564996 Number of successful extensions: 129776 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129706 Number of HSP's gapped (non-prelim): 70 length of query: 169 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 147 effective length of database: 17,147,199,772 effective search space: 2520638366484 effective search space used: 2520638366484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)