ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast33d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-inse... 30 2.1
2GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensi... 29 3.5
3CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive pro... 29 3.5
4RS3_AMBME (P79891) 40S ribosomal protein S3 28 4.6
5RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrR... 28 4.6
6RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mut... 28 4.6
7DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8) 28 6.0
8RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein ... 28 6.0
9SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1) 28 6.0
10RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA... 28 7.8
11SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (... 28 7.8
12ARGI_ASHGO (Q74ZW4) Arginase (EC 3.5.3.1) 28 7.8

>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem|
           protein B) (GAIP-B) (CmGAIP-B)
          Length = 587

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+  NG L LGW  R + V SAW+
Sbjct: 551 GYRVEENNGSLTLGWHTRPLIVTSAWK 577



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>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant|
           protein 1) (VvGAI1)
          Length = 590

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR*FGEVGPSLPA 166
           G  V+  NG L LGW  R +   SAW+   +  P+LP+
Sbjct: 549 GYRVEENNGCLMLGWHTRPLIATSAWQLANK--PALPS 584



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>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2|
          Length = 544

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 258 NGVLRLGWKGRVVTVASAW 202
           +G L LGWK R + V+SAW
Sbjct: 525 DGALYLGWKSRPLVVSSAW 543



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>RS3_AMBME (P79891) 40S ribosomal protein S3|
          Length = 253

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 252 VLRLGWKGRVVTVASAWR*FGEVGPSLPAPDNCLI 148
           +LR G  G  V +  AW   G++GP  P PD+  I
Sbjct: 176 LLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSI 210



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>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)|
          Length = 579

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+  NG L LGW  R +   SAW+
Sbjct: 548 GYRVEENNGCLMLGWHTRPLITTSAWK 574



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>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)|
           (GAI-related sequence) (Restoration of growth on ammonia
           protein 1)
          Length = 587

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+  NG L LGW  R +   SAW+
Sbjct: 555 GYRVEESNGCLMLGWHTRPLITTSAWK 581



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>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+ ++G L LGW  R +   SAWR
Sbjct: 597 GYRVEEKDGCLTLGWHTRPLIATSAWR 623



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>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein|
           Rht-B1/Rht-D1)
          Length = 623

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+ + G L LGW  R +   SAWR
Sbjct: 593 GYKVEEKEGCLTLGWHTRPLIATSAWR 619



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>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)|
          Length = 618

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+ + G L LGW  R +   SAWR
Sbjct: 588 GYKVEEKEGCLTLGWHTRPLIATSAWR 614



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>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)|
          Length = 511

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+   G L LGW+ R +   SAWR
Sbjct: 480 GYNVEENEGCLLLGWQTRPLIATSAWR 506



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>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic|
           acid-insensitive mutant protein) (OsGAI)
          Length = 625

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 GLVVKPENGVLRLGWKGRVVTVASAWR 199
           G  V+ + G L LGW  R +   SAWR
Sbjct: 595 GYRVEEKEGCLTLGWHTRPLIATSAWR 621



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>ARGI_ASHGO (Q74ZW4) Arginase (EC 3.5.3.1)|
          Length = 399

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 289 SPARACRQAREWRAPARMEGAGGDRRLRLALIW*GRAIIAGPRQ 158
           S A +  + R WRA  R  GAGG        ++ GR   AG RQ
Sbjct: 40  SSAASDAKCRRWRAAGRGGGAGG--------VYNGRGAAAGSRQ 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,996,134
Number of Sequences: 219361
Number of extensions: 757896
Number of successful extensions: 1600
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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