ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast33c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145589.3| Mus musculus BAC clone RP24-174M10 from chromosom... 42 0.42
2gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosom... 42 0.42
3gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence 42 0.42
4gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674... 42 0.42
5gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, com... 40 1.6
6gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, com... 40 1.6
7gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosom... 40 1.6
8gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome... 38 6.5
9gb|AC147895.2| Xenopus tropicalis clone CH216-3D8, complete sequ... 38 6.5
10gb|AC161124.4| Pan troglodytes BAC clone CH251-660C11 from chrom... 38 6.5
11gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromo... 38 6.5
12emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in... 38 6.5
13gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosom... 38 6.5
14gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosom... 38 6.5
15emb|CR450824.9| Zebrafish DNA sequence from clone CH211-147F12 i... 38 6.5
16gb|AC126457.3| Mus musculus BAC clone RP23-68E6 from 16, complet... 38 6.5
17ref|XM_736719.1| Plasmodium chabaudi chabaudi hypothetical prote... 38 6.5
18gb|AC002541.1| Homo sapiens BAC clone CTB-43K6 from 7, complete ... 38 6.5
19ref|XM_669916.1| Plasmodium berghei strain ANKA hypothetical pro... 38 6.5
20emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chr... 38 6.5
21emb|AL035410.7|HS591B8 Human DNA sequence from clone RP4-591B8 o... 38 6.5
22emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 38 6.5
23gb|AC092831.10| Homo sapiens 12 BAC RP11-115C18 (Roswell Park Ca... 38 6.5
24gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer... 38 6.5
25gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold 38 6.5
26gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complet... 38 6.5
27gb|AF287263.1|AF287263 Mus musculus ATP-binding cassette 1, sub-... 38 6.5
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
29emb|BX817647.1|CNS0AB92 Arabidopsis thaliana Full-length cDNA Co... 38 6.5
30gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Can... 38 6.5
31gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromoso... 38 6.5
32emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chr... 38 6.5
33emb|AL772401.22| Mouse DNA sequence from clone RP23-49A12 on chr... 38 6.5
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
35emb|AL713952.3|CNS07YPX Oryza sativa chromosome 12, . BAC OJ1618... 38 6.5
36gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, compl... 38 6.5
37gb|AC140306.3| Mus musculus BAC clone RP23-386L13 from 8, comple... 38 6.5
38emb|AL833806.7| Mouse DNA sequence from clone RP23-425H11 on chr... 38 6.5
39gb|U03915.1|PFU03915 Plasmodium falciparum vacuolar ATPase subun... 38 6.5 
>gb|AC145589.3| Mus musculus BAC clone RP24-174M10 from chromosome Y, complete sequence
          Length = 152506

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     aggtatatatcatttttattg 31
              |||||||||||||||||||||
Sbjct: 110711 aggtatatatcatttttattg 110731
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>gb|AC147621.3| Mus musculus BAC clone RP24-315M14 from chromosome Y, complete
            sequence
          Length = 166529

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 11   aggtatatatcatttttattg 31
            |||||||||||||||||||||
Sbjct: 3538 aggtatatatcatttttattg 3558
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>gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence
          Length = 194074

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 2     atcaaatacaggtatatatcatttt 26
             ||||||||||||||||||| |||||
Sbjct: 26841 atcaaatacaggtatatattatttt 26865
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>gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674A24, complete sequence
          Length = 199810

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 2     atcaaatacaggtatatatcatttt 26
             ||||||||||||||||||| |||||
Sbjct: 59836 atcaaatacaggtatatattatttt 59860
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>gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, complete sequence
          Length = 177972

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ggtatatatcatttttattg 31
             ||||||||||||||||||||
Sbjct: 46231 ggtatatatcatttttattg 46250
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>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence
          Length = 167586

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgtaaaaacaaagtaagtcc 126
             ||||||||||||||||||||
Sbjct: 85497 tgtaaaaacaaagtaagtcc 85478
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>gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosome 7, complete
            sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ggtatatatcatttttattg 31
            ||||||||||||||||||||
Sbjct: 4419 ggtatatatcatttttattg 4400
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>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     atcaaatacaggtatatat 20
             |||||||||||||||||||
Sbjct: 35943 atcaaatacaggtatatat 35925
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>gb|AC147895.2| Xenopus tropicalis clone CH216-3D8, complete sequence
          Length = 212769

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   tctaataaaaatagtaacg 94
            |||||||||||||||||||
Sbjct: 9416 tctaataaaaatagtaacg 9434
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>gb|AC161124.4| Pan troglodytes BAC clone CH251-660C11 from chromosome 7, complete
              sequence
          Length = 227304

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 4      caaatacaggtatatatcatttt 26
              ||||||||||||||| |||||||
Sbjct: 204063 caaatacaggtatatctcatttt 204085
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>gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromosome 7, complete
             sequence
          Length = 205419

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     caaatacaggtatatatcatttt 26
             ||||||||||||||| |||||||
Sbjct: 43834 caaatacaggtatatctcatttt 43856
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>emb|BX936425.7| Zebrafish DNA sequence from clone CH211-39L24 in linkage group 17,
              complete sequence
          Length = 173763

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 78     taataaaaatagtaacgtattgctcaa 104
              |||||||||||||||| |||| |||||
Sbjct: 142802 taataaaaatagtaacctattcctcaa 142776
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>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete
             sequence
          Length = 195384

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    atatatcatttttattggc 33
             |||||||||||||||||||
Sbjct: 25702 atatatcatttttattggc 25684
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>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete
             sequence
          Length = 196646

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     caaatacaggtatatatca 22
             |||||||||||||||||||
Sbjct: 68303 caaatacaggtatatatca 68285
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>emb|CR450824.9| Zebrafish DNA sequence from clone CH211-147F12 in linkage group 23,
             complete sequence
          Length = 170611

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tacaggtatatatcatttt 26
             |||||||||||||||||||
Sbjct: 45676 tacaggtatatatcatttt 45694
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>gb|AC126457.3| Mus musculus BAC clone RP23-68E6 from 16, complete sequence
          Length = 147585

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      atcaaatacaggtatatat 20
              |||||||||||||||||||
Sbjct: 108454 atcaaatacaggtatatat 108436
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>ref|XM_736719.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000119.05.0)
           partial mRNA
          Length = 1221

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  gtatatatcatttttattg 31
           |||||||||||||||||||
Sbjct: 105 gtatatatcatttttattg 87
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>gb|AC002541.1| Homo sapiens BAC clone CTB-43K6 from 7, complete sequence
          Length = 166983

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     caaatacaggtatatatcatttt 26
             ||||||||||||||| |||||||
Sbjct: 71404 caaatacaggtatatctcatttt 71426
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>ref|XM_669916.1| Plasmodium berghei strain ANKA hypothetical protein (PB000761.02.0)
           partial mRNA
          Length = 1413

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  gtatatatcatttttattg 31
           |||||||||||||||||||
Sbjct: 105 gtatatatcatttttattg 87
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>emb|AL354661.14| Human DNA sequence from clone RP11-386D8 on chromosome 9 Contains the
             gene for a novel olfactory (seven transmembrane helix)
             receptor and the 3' end of the gene for a novel protein
             (including KIAA0368), complete sequence
          Length = 138069

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 6     aatacaggtatatatcattttta 28
             ||||||| |||||||||||||||
Sbjct: 11349 aatacagatatatatcattttta 11327
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>emb|AL035410.7|HS591B8 Human DNA sequence from clone RP4-591B8 on chromosome 1p13.1 Contains
             the 3' end of the TRIM33 gene for tripartite
             motif-containing 33 and the 5' end of a ribosomal protein
             L26 (RPL26) pseudogene, complete sequence
          Length = 142552

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    tatatatcatttttattgg 32
             |||||||||||||||||||
Sbjct: 38267 tatatatcatttttattgg 38285
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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 95     tattgctcaagatgtaaaa 113
              |||||||||||||||||||
Sbjct: 329991 tattgctcaagatgtaaaa 329973
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>gb|AC092831.10| Homo sapiens 12 BAC RP11-115C18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 133922

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     aaatacaggtatatatcat 23
             |||||||||||||||||||
Sbjct: 37043 aaatacaggtatatatcat 37025
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>gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 118301

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gtatatatcatttttattg 31
             |||||||||||||||||||
Sbjct: 43827 gtatatatcatttttattg 43845
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>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold
          Length = 444202

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 4      caaatacaggtatatatcatttt 26
              |||||||||||||| ||||||||
Sbjct: 352116 caaatacaggtatacatcatttt 352138
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>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence
          Length = 219476

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   aagatgtaaaaacaaagta 121
             |||||||||||||||||||
Sbjct: 66005 aagatgtaaaaacaaagta 65987
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>gb|AF287263.1|AF287263 Mus musculus ATP-binding cassette 1, sub-family A, member 1 (Abca1)
             gene, complete cds
          Length = 278572

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ctcaagatgtaaaaacaaa 118
             |||||||||||||||||||
Sbjct: 16575 ctcaagatgtaaaaacaaa 16557
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 12      ggtatatatcatttttatt 30
               |||||||||||||||||||
Sbjct: 5890680 ggtatatatcatttttatt 5890662
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>emb|BX817647.1|CNS0AB92 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL35ZB12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 982

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 80  ataaaaatagtaacgtatt 98
           |||||||||||||||||||
Sbjct: 925 ataaaaatagtaacgtatt 943
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>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 228073

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    atatatcatttttattggc 33
             |||||||||||||||||||
Sbjct: 61961 atatatcatttttattggc 61979
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>gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromosome 7, complete
             sequence
          Length = 196799

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     caaatacaggtatatatcatttt 26
             ||||||||||||||| |||||||
Sbjct: 36984 caaatacaggtatatctcatttt 37006
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>emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chromosome 2, complete
             sequence
          Length = 71295

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   ctcaagatgtaaaaacaaa 118
             |||||||||||||||||||
Sbjct: 65454 ctcaagatgtaaaaacaaa 65436
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>emb|AL772401.22| Mouse DNA sequence from clone RP23-49A12 on chromosome 4, complete
            sequence
          Length = 179155

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 96   attgctcaagatgtaaaaa 114
            |||||||||||||||||||
Sbjct: 3084 attgctcaagatgtaaaaa 3066
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 12      ggtatatatcatttttatt 30
               |||||||||||||||||||
Sbjct: 5890673 ggtatatatcatttttatt 5890655
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>emb|AL713952.3|CNS07YPX Oryza sativa chromosome 12, . BAC OJ1618_C05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 169662

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    ggtatatatcatttttatt 30
             |||||||||||||||||||
Sbjct: 86325 ggtatatatcatttttatt 86307
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>gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, complete sequence
          Length = 232041

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 111    aaaacaaagtaagtccagc 129
              |||||||||||||||||||
Sbjct: 142309 aaaacaaagtaagtccagc 142291
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>gb|AC140306.3| Mus musculus BAC clone RP23-386L13 from 8, complete sequence
          Length = 220059

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      aaatacaggtatatatcat 23
              |||||||||||||||||||
Sbjct: 195075 aaatacaggtatatatcat 195093
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>emb|AL833806.7| Mouse DNA sequence from clone RP23-425H11 on chromosome 4, complete
             sequence
          Length = 55805

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   ctcaagatgtaaaaacaaa 118
             |||||||||||||||||||
Sbjct: 39230 ctcaagatgtaaaaacaaa 39248
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>gb|U03915.1|PFU03915 Plasmodium falciparum vacuolar ATPase subunit B mRNA, complete cds
          Length = 1811

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 95   tattgctcaagatgtaaaa 113
            |||||||||||||||||||
Sbjct: 1518 tattgctcaagatgtaaaa 1536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,768,926
Number of Sequences: 3902068
Number of extensions: 1768926
Number of successful extensions: 142632
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142439
Number of HSP's gapped (non-prelim): 193
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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