| Clone Name | rbast33a04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC002391.3| Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence Length = 108881 Score = 42.1 bits (21), Expect = 0.090 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaattttt 25 ||||||||||||||||||||| Sbjct: 7899 caaaaaaaaggggaaattttt 7919
>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence Length = 102117 Score = 42.1 bits (21), Expect = 0.090 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaatttttt 26 ||||||||||||||||||||| Sbjct: 35922 aaaaaaaaggggaaatttttt 35942
>gb|AF500388.1| Poikilospermum sp. Wooliams 547 NADH dehydrogenase (ndhF) gene, partial cds; chloroplast gene for chloroplast product Length = 1170 Score = 42.1 bits (21), Expect = 0.090 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aaaaaaaaggggaaatttttt 26 ||||||||||||||||||||| Sbjct: 557 aaaaaaaaggggaaatttttt 537
>emb|X93161.1|PFRAB11GN P.falciparum mRNA for small GTPase rab11 Length = 827 Score = 40.1 bits (20), Expect = 0.35 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaaaaaggggaaattttt 25 |||||||||||||||||||| Sbjct: 782 aaaaaaaaggggaaattttt 763
>gb|AC023712.5| Drosophila melanogaster X BAC RP98-1M22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 0.35 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaaa 20 |||||||||||||||||||| Sbjct: 90352 cccccaaaaaaaaggggaaa 90371
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 0.35 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaa 20 |||||||||||||||||||| Sbjct: 95000 cccccaaaaaaaaggggaaa 94981
>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete sequence Length = 303602 Score = 40.1 bits (20), Expect = 0.35 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaaa 20 |||||||||||||||||||| Sbjct: 251053 cccccaaaaaaaaggggaaa 251072
>emb|AL831739.10| Mouse DNA sequence from clone RP23-395O3 on chromosome 4, complete sequence Length = 121869 Score = 40.1 bits (20), Expect = 0.35 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaaa 20 |||||||||||||||||||| Sbjct: 35958 cccccaaaaaaaaggggaaa 35977
>gb|AC159428.1| Trypanosoma brucei chromosome 8 clone RPCI93-28A12, complete sequence Length = 154096 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaattttt 25 ||||||||||||||||||| Sbjct: 128027 aaaaaaaggggaaattttt 128009
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaattttt 25 ||||||||||||||||||| Sbjct: 2455121 aaaaaaaggggaaattttt 2455103
>emb|Z81548.1|CEF54F12 Caenorhabditis elegans Cosmid F54F12, complete sequence Length = 32715 Score = 38.2 bits (19), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 ccaaaaaaaaggggaaatttttt 26 ||||||||||| ||||||||||| Sbjct: 25413 ccaaaaaaaagtggaaatttttt 25435
>emb|BX323048.4| Human DNA sequence from clone RP11-539G11 on chromosome 1 Contains the 3' end of a novel gene (FLJ36760), complete sequence Length = 114676 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 1800 aaaaaaggggaaatttttt 1818
>gb|AC098690.3| Homo sapiens chromosome 1 clone RP11-507I14, complete sequence Length = 128000 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 84084 aaaaaaggggaaatttttt 84102
>gb|AC093563.3| Homo sapiens chromosome 1 clone RP4-648I13, complete sequence Length = 163579 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 137007 aaaaaaggggaaatttttt 137025
>gb|AC163019.5| Mus musculus chromosome 19, clone RP24-290E5, complete sequence Length = 152969 Score = 38.2 bits (19), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaattt 23 |||||||||||||||||| |||| Sbjct: 73108 cccccaaaaaaaaggggatattt 73086
>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20 Contains the gene for a novel protein similar to mouse and human integrin beta 1 binding protein 1 (ITGB1BP1), the gene for a novel protein similar to vertebrate development and differentiation enhancing factor 2 (DDEF2) and three CpG islands, complete sequence Length = 209698 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 21704 aaaaaaggggaaatttttt 21722
>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence Length = 134892 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaaaaaaaggggaaatttt 24 ||||||||||||||||||| Sbjct: 59776 aaaaaaaaggggaaatttt 59758
>gb|AC100862.2| Homo sapiens chromosome 8, clone RP11-1137L4, complete sequence Length = 149393 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 92657 aaaaaaggggaaatttttt 92675
>emb|BX284638.16| Zebrafish DNA sequence from clone CH211-274J7 in linkage group 3, complete sequence Length = 160026 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaattttt 25 ||||||||||||||||||| Sbjct: 157300 aaaaaaaggggaaattttt 157282
>gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165518 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaa 19 ||||||||||||||||||| Sbjct: 74477 cccccaaaaaaaaggggaa 74495
>tpg|BK002124.1| TPA: TPA_inf: Drosophila melanogaster HDC10029 (HDC10029) gene, complete cds Length = 4704 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaa 19 ||||||||||||||||||| Sbjct: 4205 cccccaaaaaaaaggggaa 4223
>gb|AC090919.6| Homo sapiens chromosome 8, clone RP11-42C24, complete sequence Length = 184897 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 178416 aaaaaaggggaaatttttt 178398
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 257050 aaaaaaggggaaatttttt 257068
>gb|AC129887.3| Atelerix albiventris clone LB4-416G11, complete sequence Length = 169193 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 53119 aaaaaaggggaaatttttt 53137
>gb|AC154282.1| Mus musculus BAC clone RP24-273O7 from chromosome 12, complete sequence Length = 166781 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaa 19 ||||||||||||||||||| Sbjct: 79290 cccccaaaaaaaaggggaa 79272
>gb|AC019187.3|AC019187 Homo sapiens BAC clone RP11-304J20 from 1, complete sequence Length = 174673 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 7690 aaaaaaggggaaatttttt 7672
>gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BAC Library C) complete sequence Length = 180194 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaattttt 25 ||||||||||||||||||| Sbjct: 70581 aaaaaaaggggaaattttt 70563
>gb|AC020553.4|AC020553 Homo sapiens BAC clone RP11-462D9 from 8, complete sequence Length = 160811 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 6482 aaaaaaggggaaatttttt 6500
>gb|AC104201.12| Mus musculus chromosome 19, clone RP24-531I1, complete sequence Length = 166165 Score = 38.2 bits (19), Expect = 1.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaattt 23 |||||||||||||||||| |||| Sbjct: 102781 cccccaaaaaaaaggggatattt 102759
>gb|AC100830.18| Homo sapiens chromosome 15, clone RP11-72808, complete sequence Length = 81542 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaatttt 24 ||||||||||||||||||| Sbjct: 40818 aaaaaaaaggggaaatttt 40836
>emb|BX119985.7| Zebrafish DNA sequence from clone CH211-270B10 in linkage group 11, complete sequence Length = 172959 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 caaaaaaaaggggaaattt 23 ||||||||||||||||||| Sbjct: 128976 caaaaaaaaggggaaattt 128958
>dbj|AK205575.1| Mus musculus cDNA, clone:Y2G0102C10, strand:unspecified Length = 287 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaatttt 24 ||||||||||||||||||| Sbjct: 85 aaaaaaaaggggaaatttt 103
>emb|BX470190.5| Zebrafish DNA sequence from clone CH211-237N17 in linkage group 3, complete sequence Length = 150830 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaattt 23 ||||||||||||||||||| Sbjct: 15504 caaaaaaaaggggaaattt 15522
>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete sequence Length = 282116 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaaggggaa 19 ||||||||||||||||||| Sbjct: 138300 cccccaaaaaaaaggggaa 138318
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaatttttt 26 ||||||||||||||||||| Sbjct: 940680 aaaaaaggggaaatttttt 940698
>emb|AL671672.4| Mouse DNA sequence from clone RP23-461E2 on chromosome 4, complete sequence Length = 191255 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaa 19 ||||||||||||||||||| Sbjct: 50843 cccccaaaaaaaaggggaa 50825
>ref|NM_124344.2| Arabidopsis thaliana kinase AT5G49660 mRNA, complete cds Length = 3291 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 222 aaaaaaggggaaattttt 205
>gb|AF220603.1| Lycopersicon esculentum VFNT Cherry Pto locus, complete sequence Length = 59202 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 54696 aaaaaggggaaatttttt 54679
>gb|AY808784.1| Schistosoma japonicum SJCHGC01964 protein mRNA, partial cds Length = 393 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 ccccaaaaaaaaggggaa 19 |||||||||||||||||| Sbjct: 231 ccccaaaaaaaaggggaa 214
>gb|AY448012.1|AY448010S3 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig SR3 Length = 31590 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 ccccaaaaaaaaggggaa 19 |||||||||||||||||| Sbjct: 21219 ccccaaaaaaaaggggaa 21202
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||| ||||||||||||| Sbjct: 120367 caaaaaaagggggaaatttttt 120388
>ref|NM_022466.2| Homo sapiens zinc finger protein, subfamily 1A, 5 (ZNFN1A5), mRNA Length = 2916 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 1729 aaaaaaaggggaaatttt 1712
>gb|AC137529.3| Carollia perspicillata clone 6M17, complete sequence Length = 118381 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 16916 aaaaaggggaaatttttt 16933
>gb|AC122400.4| Mus musculus BAC clone RP24-103C10 from chromosome 7, complete sequence Length = 166252 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 140750 aaaaaaggggaaattttt 140733
>gb|AC142110.4| Mus musculus BAC clone RP24-104I11 from chromosome 7, complete sequence Length = 177085 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 147083 aaaaaaggggaaattttt 147100
>gb|AC132259.3| Mus musculus BAC clone RP24-369B15 from chromosome 3, complete sequence Length = 131182 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||| ||||||||||||| Sbjct: 27633 caaaaaaatggggaaatttttt 27612
>gb|AC129183.3| Mus musculus BAC clone RP23-350M13 from chromosome 3, complete sequence Length = 201277 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||| ||||||||||||| Sbjct: 173480 caaaaaaatggggaaatttttt 173459
>emb|AL032644.1|CEY51H1A Caenorhabditis elegans YAC Y51H1A, complete sequence Length = 43666 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 40643 aaaaaggggaaatttttt 40626
>emb|CR716832.2|CNS0GG21 Tetraodon nigroviridis full-length cDNA Length = 525 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 254 caaaaaaaagggaaaatttttt 275
>emb|CR713383.3|CNS0GDEB Tetraodon nigroviridis full-length cDNA Length = 761 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 493 caaaaaaaagggaaaatttttt 514
>emb|CR710533.2|CNS0GB75 Tetraodon nigroviridis full-length cDNA Length = 1272 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 1002 caaaaaaaagggaaaatttttt 1023
>emb|CR708672.2|CNS0G9RG Tetraodon nigroviridis full-length cDNA Length = 787 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 511 caaaaaaaagggaaaatttttt 532
>emb|CR707842.2|CNS0G94E Tetraodon nigroviridis full-length cDNA Length = 834 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 562 caaaaaaaagggaaaatttttt 583
>emb|CR707466.2|CNS0G8TY Tetraodon nigroviridis full-length cDNA Length = 692 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 |||||||||||| ||||||||| Sbjct: 420 caaaaaaaagggaaaatttttt 441
>gb|AC007000.2| Homo sapiens BAC clone RP11-467H10 from 7, complete sequence Length = 196660 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 164076 aaaaaggggaaatttttt 164059
>emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on chromosome 1 Contains four novel genes, the 5' end of a novel gene and the 3' end of the gene for KARP-1-binding protein (KAB), complete sequence Length = 183541 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 105844 aaaaaggggaaatttttt 105827
>emb|AL592148.7| Human DNA sequence from clone RP11-378J18 on chromosome 1 Contains the gene for a novel protein (FLJ13840), the TAF1A gene for TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa, two novel genes, the gene for C219-reactive peptide (FLJ39207), the 3' of the gene for a novel protein (FLJ12806) and a CpG island, complete sequence Length = 194034 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 18521 aaaaaggggaaatttttt 18504
>emb|AL353766.8| Human DNA sequence from clone RP11-400A24 on chromosome 9, complete sequence Length = 183542 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 aaaaaaaaggggaaattt 23 |||||||||||||||||| Sbjct: 146790 aaaaaaaaggggaaattt 146773
>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two novel genes, the 5'end of the gene for VPS10 domain receptor protein SORCS 3 (SORCS3) and one CpG island, complete sequence Length = 183833 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 28509 aaaaaggggaaatttttt 28492
>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the 3' end of a gene for a novel protein similar to 17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the gene for a novel protein similar to CDC10 cell division cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a novel gene containing FLJ14186, a capicua homolog (Drosophila) (CIC) pseudogene and a CpG island, complete sequence Length = 166835 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 50114 aaaaaggggaaatttttt 50131
>emb|AL009179.1|HS97D16 Human DNA sequence from clone RP1-97D16 on chromosome 6p21.3-22.2 Contains a novel pseudogene, a 60S Ribosomal protein L30 (RPL30) pseudogene, H4 histone family member F pseudogene H4FFP and histone genes H2BFC, H2AFC, H3FK. Contains ESTs, STSs, GSSs and two CpG islands, complete sequence Length = 139904 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 110610 aaaaaggggaaatttttt 110627
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 44767 aaaaaaaggggaaatttt 44750
>gb|BC022564.1| Homo sapiens zinc finger protein, subfamily 1A, 5, mRNA (cDNA clone MGC:27049 IMAGE:4796825), complete cds Length = 2916 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 1729 aaaaaaaggggaaatttt 1712
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 167209 aaaaaggggaaatttttt 167226
>gb|AC092897.6| Homo sapiens 3 BAC RP11-292P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127044 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaattt 23 |||||||||||||||||| Sbjct: 15881 aaaaaaaaggggaaattt 15898
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE Length = 114414 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaattt 23 |||||||||||||||||| Sbjct: 87723 aaaaaaaaggggaaattt 87740
>gb|AC093433.2| Homo sapiens chromosome 1 clone RP11-363H12, complete sequence Length = 172613 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 28056 aaaaaggggaaatttttt 28073
>emb|CR749800.1| Homo sapiens mRNA; cDNA DKFZp781B0249 (from clone DKFZp781B0249) Length = 4648 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 1716 aaaaaaaggggaaatttt 1699
>emb|BX647958.1|HSM808104 Homo sapiens mRNA; cDNA DKFZp686M0751 (from clone DKFZp686M0751) Length = 2914 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 1724 aaaaaaaggggaaatttt 1707
>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete sequence Length = 188995 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 143242 aaaaaggggaaatttttt 143225
>gb|AC023705.4| Drosophila melanogaster X BAC RP98-7L6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184796 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 79984 cccccaaaaaaaagggga 79967
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence Length = 109548 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 aaaaaaaaggggaaattt 23 |||||||||||||||||| Sbjct: 17415 aaaaaaaaggggaaattt 17432
>emb|CR602407.1| full-length cDNA clone CS0DJ015YM03 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 2204 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 1036 aaaaaaaggggaaatttt 1019
>tpg|BK004007.1| TPA: TPA_inf: Xenopus laevis RTN1.1-C (RTN1) mRNA, complete cds Length = 2827 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 2636 aaaaaggggaaatttttt 2653
>gb|AC113935.2| Homo sapiens chromosome 1 clone RP4-706A16, complete sequence Length = 142422 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 120638 aaaaaggggaaatttttt 120655
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 1284769 cccccaaaaaaaagggga 1284786
>gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182247 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatt 22 |||||||||||||||||| Sbjct: 582 caaaaaaaaggggaaatt 599
>gb|AC093914.3| Homo sapiens BAC clone RP11-779N9 from 4, complete sequence Length = 170536 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 131294 aaaaaggggaaatttttt 131277
>gb|AF408206.1| Coleochaete orbicularis NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial gene for mitochondrial product Length = 2158 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 ccccaaaaaaaaggggaa 19 |||||||||||||||||| Sbjct: 1408 ccccaaaaaaaaggggaa 1425
>gb|AC098851.5| Homo sapiens BAC clone RP13-574L22 from 7, complete sequence Length = 161470 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 70551 aaaaaggggaaatttttt 70534
>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence Length = 177160 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 47972 aaaaaggggaaatttttt 47989
>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence Length = 199866 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 ||||||||||||||||| |||| Sbjct: 13207 caaaaaaaaggggaaatatttt 13228
>gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, complete sequence Length = 175708 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 5 caaaaaaaaggggaaatttttt 26 ||||||||||||||| |||||| Sbjct: 99044 caaaaaaaaggggaattttttt 99023
>gb|AC034103.7|AC034103 Homo sapiens chromosome 15 clone CTD-3231F14 map 15q21.2, complete sequence Length = 165416 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 12206 aaaaaaaggggaaatttt 12189
>gb|AC022302.7|AC022302 Homo sapiens chromosome 15 clone CTD-2019H15 map 15q21.2, complete sequence Length = 176872 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 168162 aaaaaaaggggaaatttt 168145
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 3356347 aaaaaggggaaatttttt 3356330
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 cccaaaaaaaaggggaaa 20 |||||||||||||||||| Sbjct: 15593283 cccaaaaaaaaggggaaa 15593266
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 cccaaaaaaaaggggaaa 20 |||||||||||||||||| Sbjct: 80649 cccaaaaaaaaggggaaa 80632
>emb|BX323598.9| Zebrafish DNA sequence from clone CH211-196M2 in linkage group 18, complete sequence Length = 197329 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 100010 aaaaaaggggaaattttt 100027
>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence Length = 184644 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 89432 aaaaaggggaaatttttt 89415
>gb|AC084563.1|CBRG36E21 Caenorhabditis briggsae cosmid G36E21, complete sequence Length = 38866 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatttttt 26 ||||||||||| |||||||||| Sbjct: 20260 caaaaaaaaggtgaaatttttt 20281
>gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1, complete sequence Length = 137304 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 9686 aaaaaggggaaatttttt 9703
>gb|AC008443.10| Homo sapiens chromosome 5 clone CTC-338M12, complete sequence Length = 120515 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 112072 aaaaaggggaaatttttt 112089
>gb|AF463659.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence Length = 1486 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 1185 cccccaaaaaaaagggga 1168
>gb|AC138036.2| Homo sapiens chromosome 5 clone XXcos-B22C99, complete sequence Length = 42108 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 13171 aaaaaggggaaatttttt 13188
>dbj|AK117901.1| Arabidopsis thaliana At5g49660 mRNA for putative receptor protein kinase, complete cds, clone: RAFL19-08-G15 Length = 3291 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 222 aaaaaaggggaaattttt 205
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5 Length = 71807 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 1513 aaaaaaggggaaattttt 1530
>gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete sequence Length = 165359 Score = 36.2 bits (18), Expect = 5.5 Identities = 24/26 (92%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaatttttt 26 ||||||||||||| || ||||||||| Sbjct: 29652 cccccaaaaaaaatggaaaatttttt 29627
>gb|AY552588.1| Trypanosoma cruzi clone C6:24B7 telomeric region Length = 34387 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 4641 cccccaaaaaaaagggga 4658
>emb|BX950194.9| Zebrafish DNA sequence from clone CH211-218C6 in linkage group 18, complete sequence Length = 122061 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 113927 aaaaaaggggaaattttt 113910
>emb|BX510919.4| Zebrafish DNA sequence from clone DKEY-164K19 in linkage group 20, complete sequence Length = 243899 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 4 ccaaaaaaaaggggaaattttt 25 |||||||||||||| ||||||| Sbjct: 81541 ccaaaaaaaaggggtaattttt 81562
>emb|AL162551.4|CNS01RHW Human chromosome 14 DNA sequence BAC R-479H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 182960 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 113923 aaaaaggggaaatttttt 113906
>emb|AL121576.5|CNS01DRW Human chromosome 14 DNA sequence BAC R-476J6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 221004 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 73399 aaaaaggggaaatttttt 73382
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 143052 cccccaaaaaaaagggga 143069
>emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on chromosome 13, complete sequence Length = 186496 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 cccccaaaaaaaagggga 18 |||||||||||||||||| Sbjct: 37506 cccccaaaaaaaagggga 37489
>emb|Y07843.1|MISECOX3 Sepia elegans mitochondrial coxIII gene Length = 657 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 cccaaaaaaaaggggaaa 20 |||||||||||||||||| Sbjct: 241 cccaaaaaaaaggggaaa 224
>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete sequence Length = 212856 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaatt 22 |||||||||||||| ||||||| Sbjct: 3122 cccccaaaaaaaagaggaaatt 3101
>gb|AC105906.21| Mus musculus chromosome 7, clone RP24-81O24, complete sequence Length = 213004 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 63971 aaaaaggggaaatttttt 63988
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 cccaaaaaaaaggggaaa 20 |||||||||||||||||| Sbjct: 15601524 cccaaaaaaaaggggaaa 15601507
>gb|AC150390.2| Branchiostoma floridae clone CH302-115N8, complete sequence Length = 230518 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaaaaaaggggaaatttt 24 |||||||||||||||||| Sbjct: 324 aaaaaaaggggaaatttt 307
>emb|AL844566.8| Mouse DNA sequence from clone RP23-173H17 on chromosome 2, complete sequence Length = 229583 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 10034 aaaaaggggaaatttttt 10017
>emb|AL935319.8| Zebrafish DNA sequence from clone DKEY-56L2 in linkage group 18, complete sequence Length = 106806 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 25278 aaaaaggggaaatttttt 25261
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 5 caaaaaaaaggggaaatttttt 26 ||||||||||||||||| |||| Sbjct: 79861 caaaaaaaaggggaaatctttt 79840
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 36.2 bits (18), Expect = 5.5 Identities = 24/26 (92%) Strand = Plus / Minus Query: 1 cccccaaaaaaaaggggaaatttttt 26 ||||||||||||| || ||||||||| Sbjct: 858825 cccccaaaaaaaatggaaaatttttt 858800
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 464568 aaaaaggggaaatttttt 464585
>emb|AL772168.5| Mouse DNA sequence from clone RP23-419B9 on chromosome 4, complete sequence Length = 128814 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 5 caaaaaaaaggggaaatt 22 |||||||||||||||||| Sbjct: 91635 caaaaaaaaggggaaatt 91652
>emb|AL807790.15| Mouse DNA sequence from clone RP23-471O23 on chromosome 4, complete sequence Length = 179628 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 50335 aaaaaaggggaaattttt 50318
>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete sequence Length = 209714 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 aaaaaaggggaaattttt 25 |||||||||||||||||| Sbjct: 68696 aaaaaaggggaaattttt 68713
>gb|AC148985.4| Mus musculus BAC clone RP23-124O21 from chromosome 7, complete sequence Length = 190473 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 aaaaaggggaaatttttt 26 |||||||||||||||||| Sbjct: 101457 aaaaaggggaaatttttt 101440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 510,651 Number of Sequences: 3902068 Number of extensions: 510651 Number of successful extensions: 163036 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162267 Number of HSP's gapped (non-prelim): 768 length of query: 45 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 25 effective length of database: 17,155,003,908 effective search space: 428875097700 effective search space used: 428875097700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)