Clone Information

BLAST Search Result

Clone Name	rbast28g06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y36K_HALSN (P14321) Hypothetical 36 kDa protein	33	0.21
2	CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-gluta...	31	0.80
3	SP96_DICDI (P14328) Spore coat protein SP96	30	1.0
4	MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mu...	30	1.0
5	TREA_RALSO (Q8XT38) Periplasmic trehalase precursor (EC 3.2.1.28...	30	1.4
6	CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-gluta...	30	1.4
7	SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding fact...	30	1.4
8	HRCA_CHLPN (Q9Z850) Heat-inducible transcription repressor hrcA	30	1.4
9	ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V...	30	1.8
10	SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (...	30	1.8
11	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	30	1.8
12	PACC_ASPNG (Q00203) pH-response transcription factor pacC/RIM101	29	3.0
13	CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displace...	29	3.0
14	LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)	29	3.0
15	Y1934_MYCBO (Q7TZB9) UPF0189 protein Mb1934c	29	3.0
16	SOS1_MOUSE (Q62245) Son of sevenless homolog 1 (SOS-1) (mSOS-1)	29	3.0
17	YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P...	28	4.0
18	Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase ...	28	4.0
19	VE2_HPV47 (P22420) Regulatory protein E2	28	4.0
20	KCNG2_HUMAN (Q9UJ96) Potassium voltage-gated channel subfamily G...	28	4.0
21	VTS1_USTMA (Q4P965) Protein VTS1	28	4.0
22	MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1	28	5.2
23	EAF6_NEUCR (Q7SDW6) Chromatin modification-related protein eaf-6	28	5.2
24	SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)	28	5.2
25	ODP2_HAEIN (P45118) Dihydrolipoyllysine-residue acetyltransferas...	28	5.2
26	NU116_YEAST (Q02630) Nucleoporin NUP116/NSP116 (Nuclear pore pro...	28	5.2
27	TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)	28	5.2
28	DEND_HUMAN (O94850) Dendrin	28	5.2
29	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	28	6.8
30	RSC1_SCHPO (O74964) Chromatin structure remodeling complex prote...	28	6.8
31	WBP2_MOUSE (P97765) WW domain-binding protein 2 (WBP-2)	28	6.8
32	PVDA_BURCE (O51940) L-ornithine 5-monooxygenase (EC 1.13.12.-) (...	28	6.8
33	ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1...	28	6.8
34	MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)	28	6.8
35	GLMM_PROMM (Q7V4W4) Phosphoglucosamine mutase (EC 5.4.2.10)	28	6.8
36	DPOL_ADE04 (P87503) DNA polymerase (EC 2.7.7.7)	28	6.8
37	MYPT1_MOUSE (Q9DBR7) Protein phosphatase 1 regulatory subunit 12...	28	6.8
38	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	28	6.8
39	APXL_HUMAN (Q13796) Apical-like protein (APXL protein)	28	6.8
40	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	28	6.8
41	IF2_BRUME (Q8YEB3) Translation initiation factor IF-2	28	6.8
42	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	28	6.8
43	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	28	6.8
44	CECR6_MOUSE (Q99MX7) Cat eye syndrome critical region protein 6 ...	28	6.8
45	SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S...	27	8.9
46	KPCG_HUMAN (P05129) Protein kinase C gamma type (EC 2.7.11.13) (...	27	8.9
47	ISPE_THIDA (Q3SLR6) 4-diphosphocytidyl-2-C-methyl-D-erythritol k...	27	8.9
48	V2A_CMVQ (P06012) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (...	27	8.9
49	ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1...	27	8.9
50	ASK10_YEAST (P48361) Protein ASK10	27	8.9
51	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	27	8.9
52	AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)	27	8.9
53	SYA_THEFY (Q47N66) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	27	8.9
54	MMPLD_STRCO (Q9XA86) Putative membrane protein SCO0839	27	8.9
55	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	27	8.9
56	YD85_SCHPO (Q10410) Hypothetical protein C1F3.05 in chromosome I	27	8.9

>Y36K_HALSN (P14321) Hypothetical 36 kDa protein|
          Length = 328

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +2

Query: 47  FVRCPRICFDTFS*QIDSHRRNTQTNCRLSNEPILRGRIGRDAPAVSVLRAARPDRPHGA 226
           FV+ P +  + F   +D+H +N++   R ++  ++      D  AVS+ R+ARPDR  G 
Sbjct: 170 FVKGPVVA-EQFQDVLDAHVKNSEGAGREAHRAVVED--DEDEAAVSIRRSARPDREDGI 226

Query: 227 GRPGA 241
              GA
Sbjct: 227 ENLGA 231

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>CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 376

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
 Frame = +3

Query: 45  ISSAALGFVSIHFP----NKSTATGVIRKQIAA*ATSPFF-----AGVSGVTHRPSPYYE 197
           + + AL F+   F     N+  A  ++++++   A+   F     A  + V  RP     
Sbjct: 96  LDAGALDFLPKKFEDIARNRDEAVSLLQQRVIQIASKRAFMRRPVASSTPVQERPQSTLN 155

Query: 198 RPVQTDRTEPAAQAPASRTNATAASHSA--ITSLSAPGLVIGGKKS-QKAVTSTNAS 359
           RP    R E +AQAP SR    A   ++     L+A G   GG  + QK +T   A+
Sbjct: 156 RPTTGLRREASAQAPVSRAPVAAKFRASGKKYQLTAIGTSTGGPVALQKILTKLPAN 212

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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = +3

Query: 51  SAALGFVSIHFPNKSTATGVIRKQIAA*ATSPFFAGVSGVTHRPSPYYERPVQTDRTEPA 230
           S+ALG  S    + S+A        +A ++SP  +  S      SP       +  +  A
Sbjct: 429 SSALGSTSESSASGSSAVSSSASGSSAASSSPSSSAASS-----SPSSSAASSSPSSSAA 483

Query: 231 AQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASVSGVATS 380
           + +P+S  +++++  S+ +S SAP        +  +  S++++ S  A+S
Sbjct: 484 SSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSASS 533

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>MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT)|
           (Episialin)
          Length = 630

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 63  GFVSIHFPNKSTATGVIRKQIAA*ATSPFFAGVSG-VTHRPSPYYERPVQTDRTEPAAQA 239
           GF+++     S  +        A  T+P  +  S   T  P      PVQ+  + PA +A
Sbjct: 20  GFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPPGDSTSSPVQSSTSSPATRA 79

Query: 240 PASRTNATAASHSAITSLSAP 302
           P   T+    S ++  + +AP
Sbjct: 80  PEDSTSTAVLSGTSSPATTAP 100

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>TREA_RALSO (Q8XT38) Periplasmic trehalase precursor (EC 3.2.1.28)|
           (Alpha,alpha-trehalase) (Alpha,alpha-trehalose
           glucohydrolase)
          Length = 551

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
 Frame = +3

Query: 189 YYERPVQTDRTEPAAQA---------PA-SRTNATAASHSAITSLSAPGLVIGGKKSQKA 338
           Y+  P +T  T PA Q+         PA +RT ATA  +S++  L  P +V GG+  +  
Sbjct: 114 YFTVPFETVITPPAGQSLRAHINWLWPALTRTTATAPDNSSLIPLPKPYVVPGGRFREVY 173

Query: 339 VTSTNASVSGVATS 380
              T  ++ G+  S
Sbjct: 174 YWDTYFTMLGLQAS 187

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>CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 376

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
 Frame = +3

Query: 45  ISSAALGFVSIHFP----NKSTATGVIRKQIAA*ATSPFF-----AGVSGVTHRPSPYYE 197
           + + AL F+   F     N+  A  ++++++   A+   F     A  + V  RP     
Sbjct: 96  LDAGALDFLPKKFEDIARNRDEAVSLLQQRVIQIASKRAFMRRPVASSTPVQERPQSTLN 155

Query: 198 RPVQTDRTEPAAQAPASRTNATAASHSA--ITSLSAPGLVIGGKKS-QKAVTSTNAS 359
           RP    R E  AQAP SR    A   ++     L+A G   GG  + QK +T   A+
Sbjct: 156 RPTTGLRREAPAQAPVSRAPVAAKFRASGKKYQLTAIGTSTGGPVALQKILTKLPAN 212

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>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
           (Transcription factor GATA-B) (dGATA-B) (Protein
           serpent)
          Length = 1264

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
 Frame = +3

Query: 12  GSLFESRLKTQISSAALGFVSIHFPNKSTATGVIRKQIAA*ATSPFFAGVS--GVTHRPS 185
           GSL  +   ++I +A          N     G     +AA  T+   A  +  G T   +
Sbjct: 33  GSLLSNAADSKIRTAKSN-------NNKRQAGRAATALAATTTASALAATTTAGATGSNA 85

Query: 186 PYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLV-IGGKKSQKAVTSTNASV 362
              E  +  +     A  P +   A AA+ S++ S  +  L  +  + +++AVT+ NAS 
Sbjct: 86  AANETEIAIETENGEAATPTAAATAAAANLSSLESARSQALTSVVSETARQAVTTANASA 145

Query: 363 SGVAT 377
           +  +T
Sbjct: 146 TSTST 150

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>HRCA_CHLPN (Q9Z850) Heat-inducible transcription repressor hrcA|
          Length = 398

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 98  SHRRNTQTNCRLSNEPILR 154
           S RR   +NC+LSNEPILR
Sbjct: 365 SFRRPLTSNCKLSNEPILR 383

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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 225 PAAQAPASRTNATAASHSAITSLSA-PGLVIGGKKSQKAVTSTNASVSGVATSRGG 389
           P + +P+S+    AAS S+ +S SA          S  + +S++AS S  ++S GG
Sbjct: 575 PPSASPSSQAAVAAASSSSASSSSASSSSASSSSASSSSASSSSASSSSASSSAGG 630

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>SPL16_ARATH (Q700C2) Squamosa promoter-binding-like protein 16 (SPL1-related|
           protein 3)
          Length = 988

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 249 RTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASVSGVATSRG 386
           RT  T++ HSA TSL    L        +  +STN S S  + SRG
Sbjct: 298 RTKLTSSDHSATTSLEKKTLEFPSFGGGERTSSTNHSPSQYSDSRG 343

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 131 LSNEPILRGRIGRDAPAVSVLRAARPDRPHGAGRPG-AGVPHERDG 265
           L+  P LRG  G   P      A  P  P  AG PG  G+P ER G
Sbjct: 688 LAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGG 733

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>PACC_ASPNG (Q00203) pH-response transcription factor pacC/RIM101|
          Length = 667

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 201 PVQTDRTEPAAQAPASRTNATAASHSAITSLSA 299
           P  T +  P+AQ PA  ++ATAAS +A  + ++
Sbjct: 19  PTSTSQDSPSAQQPAQVSSATAASAAATAAAAS 51

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>CUTL1_MOUSE (P53564) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Cux)
          Length = 1515

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177  RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLV-IGGKKSQKAVTSTN 353
            RP P  E         P+  APA+  +A  ++ +  T+  APG    G  +   A+ ST+
Sbjct: 1397 RPRPLPEGLADAPAPVPSLAAPAAGEDAATSATAPATATEAPGAARAGPAERSSALPSTS 1456

Query: 354  ASVSGVA 374
            A  +  A
Sbjct: 1457 APANAPA 1463

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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 406 HQGWWRPPRLVATPLTLAFVLVTAFWL 326
           H  WW P   ++TP+ LA +L T  WL
Sbjct: 737 HAPWWPP---LSTPVDLASILTTLVWL 760

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>Y1934_MYCBO (Q7TZB9) UPF0189 protein Mb1934c|
          Length = 358

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = +3

Query: 123 IAA*ATSPFFAGVSGVTHRPSPYYERPVQTDRTEPAAQAPASRTNATAASHSA------- 281
           + A A  P +A +S  T RP+      V      PA  A A  T AT AS SA       
Sbjct: 37  LTAGARCPAYAAISASTARPAATALPAVAASTARPA--ATAGTTPATGASGSARPTDAAG 94

Query: 282 ITSLSAPGLV 311
           +  L+ PG+V
Sbjct: 95  MADLARPGVV 104

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>SOS1_MOUSE (Q62245) Son of sevenless homolog 1 (SOS-1) (mSOS-1)|
          Length = 1319

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
 Frame = +3

Query: 165  GVTHRPSPYYERP-------VQTDRTEPAAQAPAS-RTNATAASHSAITSLSAPGLVIGG 320
            G    P+P  + P       +    TE  A AP S RT  T    S  +S +    V   
Sbjct: 1048 GTMRHPTPLQQEPRKISYSRIPESETESTASAPNSPRTPLTPPPASGTSSNTDVCSVFDS 1107

Query: 321  KKSQKAVTSTNASVSGVATSRG 386
              S     S +ASVS ++ S+G
Sbjct: 1108 DHSASPFHSRSASVSSISLSKG 1129

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>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 210 TDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASVSGVATS 380
           T  +  A+ +  S T+AT  S +  +SLS+         S  A +S N++ S  ATS
Sbjct: 154 TTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 210

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>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 252 CGTPAPGRPAPCGRSGRAARSTETAGASRPIRPR 151
           C  P PG  +P  R  RA+ +T   G SRP   R
Sbjct: 31  CRPPPPGSASPSPRPRRASCATGCCGRSRPYARR 64

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>VE2_HPV47 (P22420) Regulatory protein E2|
          Length = 506

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 162 SGVTHRPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAV 341
           S  T RP  +  R     R+  ++Q  +S T  T    S  TSL+         +++   
Sbjct: 255 SSRTRRPQTHQRRSRSRSRSRSSSQTHSSTTTTTTTYRSRSTSLNK-------TRARSRS 307

Query: 342 TSTNASVSGVATSRGGR 392
            ST+ S S   + RGGR
Sbjct: 308 RSTSRSTS-TTSRRGGR 323

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>KCNG2_HUMAN (Q9UJ96) Potassium voltage-gated channel subfamily G member 2|
           (Voltage-gated potassium channel subunit Kv6.2) (Cardiac
           potassium channel subunit)
          Length = 466

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
 Frame = -3

Query: 382 RLVATPLTLAFVLVTAFW-LFFPPITRPGADKLVIAECEAAVAFVRDAGAWAAGSVRSVW 206
           RL+  P  LAF    A+W +    + R    +L   E EAA A        A GS     
Sbjct: 91  RLLRGPCALAFRDELAYWGIDEARLERCCLRRLRRREEEAAEARAGPTERGAQGSPARAL 150

Query: 205 TGRS*YGDGRCVTPDTPAK--NGLVAQAAICLRITPVAVDLLGKCIETNP--RAADE 47
             R     GR    D      +GL  +   C+ ++ VAV  +G C+ T P  RA +E
Sbjct: 151 GPRGRLQRGRRRLRDVVDNPHSGLAGKLFACVSVSFVAVTAVGLCLSTMPDIRAEEE 207

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>VTS1_USTMA (Q4P965) Protein VTS1|
          Length = 728

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 143 PILRGRIGRDAP----AVSVLRAARPDRPHGAGRPGAGVPHERDGRLTLGD 283
           P L G+ GR +P    + SV  AA P    GAG  GAG  +   G   + D
Sbjct: 559 PGLAGQAGRKSPRSGTSPSVRAAALPGAAGGAGSGGAGASNAAGGEEEVAD 609

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>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +3

Query: 177  RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNA 356
            +PS    +P+     EP +QA   RT+ T        S+  P +V+      +A TST+ 
Sbjct: 1540 QPSTSTHQPITP---EPTSQATRGRTDRT--------SVKTPKIVVPTVPELQASTSTDQ 1588

Query: 357  SVSGVATSRGGR 392
             V+   TSR  R
Sbjct: 1589 PVTSEPTSRTTR 1600

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>EAF6_NEUCR (Q7SDW6) Chromatin modification-related protein eaf-6|
          Length = 179

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +3

Query: 168 VTHRPSPYYERPVQTDRTEPAAQAPASR----TNATAASHSAITSLSAPGLVIGGK---K 326
           V  R S  Y    Q D   PA+ APAS      + +  +    +S   P     GK   K
Sbjct: 86  VFSRSSISYNPAAQQDSQTPASSAPASHAPTPVSTSFNNKDGASSAPTPTSATAGKANSK 145

Query: 327 SQKAVTSTNASVSGVAT 377
            +KA TS  A V    T
Sbjct: 146 KKKAATSGGAGVEDSET 162

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>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)|
          Length = 2170

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
 Frame = +3

Query: 87   NKSTATGVIRKQIAA*ATSPFFAGVSGVTH-----RPSPYYER-PVQTDRTEPAA----- 233
            ++S    +  +++   AT P  A  SGVTH      PSP   R  VQ  R + +A     
Sbjct: 691  DRSHTQPITTEEVVIAATEPIPASCSGVTHPVTARLPSPTVARSSVQPARLQASAHQKAL 750

Query: 234  ---QAPASRTNATAASHSAITSLSAPGLVIGGKKSQ---KAVTSTN 353
               QA   R +A      + T   A  L +  K SQ   KA+++ N
Sbjct: 751  ARDQANEGRESAEPGEPDSSTLSLAEKLALFNKLSQPVSKAISTRN 796

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>ODP2_HAEIN (P45118) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 567

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 PVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGG 320
           P   + T P A AP +   ATA + SAI  ++ P   IGG
Sbjct: 81  PAADEPTAPVADAPTAPVVATAPTASAIVEVNVPD--IGG 118

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>NU116_YEAST (Q02630) Nucleoporin NUP116/NSP116 (Nuclear pore protein|
           NUP116/NSP116)
          Length = 1113

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
 Frame = +3

Query: 105 GVIRKQIAA*ATSPFFAGVSGVTHRPSPYYERPV----------QTDRTE---------- 224
           GV R    +  T PF  G +G T       ++PV          QT+ T+          
Sbjct: 3   GVSRGAFPSATTQPF--GSTGSTFGGQQQQQQPVANTSAFGLSQQTNTTQAPAFGNFGNQ 60

Query: 225 ----PAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASV 362
               P   + ++  N T    S +T+ +A G + GG  +  A+++ +ASV
Sbjct: 61  TSNSPFGMSGSTTANGTPFGQSQLTNNNASGSIFGGMGNNTALSAGSASV 110

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>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 150 FAGVSGVTHRPSPYYERPV----QTDRTEPAAQAPASRTNATAASHSAITSLSAP 302
           F+G     H+P    E P+     T RT P   + AS  +++A+S S+ ++ S P
Sbjct: 235 FSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSSSASSCSSSASSCSSASAASTP 289

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>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 237 PGRPAPCGRSGRAARSTETAGASRPIRPRRMGSLLR 130
           PGRP P  R+  A R  + AG   P+RP R+  + R
Sbjct: 86  PGRPRPEPRN--APRVAQLAGLPAPLRPERLAPVGR 119

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 237 PGRPAPCGRSGRAARSTETAGASRPIRPRRMG 142
           PG P P G+ G      ET  A RP  P   G
Sbjct: 884 PGPPGPAGKZGSKGPRGETGPAGRPGEPGPAG 915

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>RSC1_SCHPO (O74964) Chromatin structure remodeling complex protein rsc1|
           (Remodel the structure of chromatin complex subunit 1)
          Length = 803

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/125 (17%), Positives = 46/125 (36%)
 Frame = +3

Query: 21  FESRLKTQISSAALGFVSIHFPNKSTATGVIRKQIAA*ATSPFFAGVSGVTHRPSPYYER 200
           F ++  T +S+  +       PN  +      ++ ++ +     +     +H P+  +  
Sbjct: 544 FSTKASTPLSTDDIATPLSSAPNPPSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNS 603

Query: 201 PVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASVSGVATS 380
           P+    T+  +  PA    A + S  ++ +      + GG   +  V     S     TS
Sbjct: 604 PIMRTSTKSTSPIPARPFYAQSGSLQSLNTTQHSHQISGGHSGRMNVPYAKLSY----TS 659

Query: 381 RGGRH 395
             GRH
Sbjct: 660 HNGRH 664

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>WBP2_MOUSE (P97765) WW domain-binding protein 2 (WBP-2)|
          Length = 261

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 PFFAGVSGVTHRPSPYYERPVQTDRTEPAAQA-PASRTNATAASHSA 281
           P   G  G    P P Y  P++   + P+A A PA+   A  A+ SA
Sbjct: 184 PMMDGAMGYVQPPPPPYPGPMEPPVSGPSAPATPAAEAKAAEAAASA 230

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>PVDA_BURCE (O51940) L-ornithine 5-monooxygenase (EC 1.13.12.-) (L-ornithine|
           N5-oxygenase)
          Length = 444

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 252 CGTPAPGRPAPCGRSGRAARSTETAGASRPIRPRRM 145
           C   + GRP  C RS RA R+     +    RPR M
Sbjct: 398 CCEDSHGRPTRCCRSWRAVRTKSARRSKTGSRPRTM 433

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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -1

Query: 246 TPA----PGRPAPCGRSGRAARSTETAGASRPIRP 154
           TPA    P  PAP  R G+A RS   AG+  P  P
Sbjct: 62  TPAVVIPPPSPAPEPRGGKAKRSPSAAGSGGPPTP 96

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>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)|
          Length = 662

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 213 DRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGK-KSQKAVTSTNASVSGVATSRGG 389
           D T  AA A A     TAA+  A T+ +AP     GK  +  A T+   + +G  T+  G
Sbjct: 48  DATTAAATAAAE---TTAAAGEAPTTTTAPATTAAGKAPTTAAATAPTTAAAGAPTTATG 104

Query: 390 R 392
           +
Sbjct: 105 K 105

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>GLMM_PROMM (Q7V4W4) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 468

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
 Frame = -3

Query: 376 VATPLTLAFVLVTAFWL-FFPPITRPGADKLVIAECEAAVAFVRDAGAWAAGSVRSVWTG 200
           V T LT AF+L   +W     P   P    +      A VA    AG  AAG  R VWT 
Sbjct: 29  VGTLLTPAFILQVGYWCGQVLPDQGPVLIGMDSRSSGAMVASALTAGLTAAG--REVWT- 85

Query: 199 RS*YGDGRCVTPDTP-------AKNGLVAQAA 125
                 G C TP  P       A  GL+  A+
Sbjct: 86  -----LGLCPTPAVPGLIRKLGAAGGLMVSAS 112

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>DPOL_ADE04 (P87503) DNA polymerase (EC 2.7.7.7)|
          Length = 1193

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 190 YGDGR---CVTPDTPAKNGLVAQAAICLRITPVAVDLLGKCIETNPRAADEICVFRRLSN 20
           +GD R   CVTP+  A      Q    L+ T +AVDL    +  NP  AD       LS+
Sbjct: 324 HGDPRTFYCVTPEKMAVGQQFRQYRDRLQ-TALAVDLWTSFLRANPHLADWALEQHGLSD 382

Query: 19  REPLVY 2
            + L Y
Sbjct: 383 PDELTY 388

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>MYPT1_MOUSE (Q9DBR7) Protein phosphatase 1 regulatory subunit 12A (Myosin|
           phosphatase-targeting subunit 1) (Myosin phosphatase
           target subunit 1)
          Length = 1004

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 195 ERPVQTDRTEPAAQAPASRTNATAASHSAITS 290
           E   +TD+T+P A    + T++T A+ +A+T+
Sbjct: 366 ESEAETDKTKPMASVSNAHTSSTQAAPAAVTA 397

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>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 168 VTHRPSPYYER------PVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKS 329
           V HRPSP Y+R      P +++ ++PA +AP +       S     + S  G   G + S
Sbjct: 121 VDHRPSPPYQRAARKDPPRRSEPSKPANRAPGNDRGGRGPSDRRGDARSGGGGRGGARGS 180

Query: 330 QK 335
            K
Sbjct: 181 DK 182

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>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)|
          Length = 1616

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 243  PAPGRPAPCGRSGRAARSTETAGASRPI 160
            PAP RP P  R  R  R+T+ A A  P+
Sbjct: 1060 PAPQRPPPPKREPRRYRATDGAPADAPV 1087

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGK 323
           RP+PY  RP Q  R +     PA R    +   + I + +AP   I GK
Sbjct: 241 RPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPAPIIADAAP---IAGK 286

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>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2|
          Length = 959

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGK 323
           RP+PY  RP Q  R +     PA R    +   + I + +AP   I GK
Sbjct: 241 RPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPAPIIADAAP---IAGK 286

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGK 323
           RP+PY  RP Q  R +     PA R    +   + I + +AP   I GK
Sbjct: 241 RPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPAPIIADAAP---IAGK 286

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 177 RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGK 323
           RP+PY  RP Q  R +     PA R    +   + I + +AP   I GK
Sbjct: 241 RPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPAPIIADAAP---IAGK 286

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>CECR6_MOUSE (Q99MX7) Cat eye syndrome critical region protein 6 homolog|
          Length = 572

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 180 PSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNAS 359
           P P  +  V    T PAA +  S   ++ +  +A     A    +GG  S+ AV +    
Sbjct: 97  PGPPAQGGVPVSATAPAAASSTSTPTSSCSMTAADFGAGAAAGTVGGPGSRSAVGAGGTG 156

Query: 360 VSGVAT 377
             G A+
Sbjct: 157 TGGAAS 162

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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 177 RPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNA 356
           R SP Y+ P +   +E ++++ +   + T      IT +++     GG   + A  +  A
Sbjct: 277 RDSPTYD-PYKRSPSESSSESRSRSRSPTPGREEKITFITS----FGGSDEEAAAAAAAA 331

Query: 357 SVSGVATSR 383
           + SGV T +
Sbjct: 332 AASGVTTGK 340

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>KPCG_HUMAN (P05129) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
          Length = 697

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 243 PAPGRPAPCGRSGRAARSTETAGASRPIRPRRM 145
           P P RP PCGRSG       T  A     P R+
Sbjct: 628 PPPFRPRPCGRSGENFDKFFTRAAPALTPPDRL 660

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>ISPE_THIDA (Q3SLR6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 278

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +2

Query: 155 GRIGRDA--PAVS-----VLRAARPDRPHGAGRPGAGVPHERDGRLTLG 280
           GRI R+   P VS      +RAAR  +P+   RPGAGV    D RL +G
Sbjct: 49  GRIVREGALPGVSEDQDLTVRAARLLQPYA--RPGAGVGIRLDKRLPMG 95

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>V2A_CMVQ (P06012) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 839

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 162 SGVTHRPSPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAV 341
           SGV  RP        +T +T+ + Q PAS     +   SAI S + P + I   +S+  V
Sbjct: 779 SGVDRRPPLSQFAGGETSKTKVSRQKPASEGLQKSQRESAIYSETFPDVTIPRSRSRGLV 838

Query: 342 T 344
           +
Sbjct: 839 S 839

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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 237 PGRPAPCGRSGRAARSTETAGASRPIRP 154
           P  PAP  R G+A RS   AG+  P  P
Sbjct: 69  PPSPAPEPRGGKAKRSPSAAGSGGPPTP 96

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>ASK10_YEAST (P48361) Protein ASK10|
          Length = 1146

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 183  SPYYERPVQTDRTEPAAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASV 362
            SP Y       + +P    P SRT++++ + +A+ S SA   +         V   N +V
Sbjct: 948  SPCYNDDQIRQQQQPLQMQPLSRTSSSSVNVTAMRSTSAGNSITANAPVVPKVMVNNQNV 1007

Query: 363  SGVATSR 383
              VA  +
Sbjct: 1008 KTVAADQ 1014

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 25/88 (28%), Positives = 28/88 (31%)
 Frame = +3

Query: 39   TQISSAALGFVSIHFPNKSTATGVIRKQIAA*ATSPFFAGVSGVTHRPSPYYERPVQTDR 218
            T  +S  LG   I  P+    TG      A   T+          H  S   E P     
Sbjct: 2744 TSATSGTLGTTHITEPS----TGTSHTPAATTGTTQHSTPALSSPHPSSRTTESPPSPGT 2799

Query: 219  TEPAAQAPASRTNATAASHSAITSLSAP 302
            T P      SRT ATA      TS   P
Sbjct: 2800 TTPGHTTATSRTTATATPSKTRTSTLLP 2827

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>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)|
          Length = 926

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 201 PVQTDRTEP-AAQAPASRTNATAASHSAITSLSAPGLVIGGKKSQKAVTSTNASVS 365
           P+      P AA APA+  NATAA+++A  + +   +V     +  AV +  A+ +
Sbjct: 659 PISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVAAAPVAVAAVAAPAAAAA 714

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>SYA_THEFY (Q47N66) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 889

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 LRGRIGRDAPAVSVLRAARPDRP 217
           +RGR+G D PAV  +     DRP
Sbjct: 804 VRGRLGEDRPAVVAIAGVPSDRP 826

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>MMPLD_STRCO (Q9XA86) Putative membrane protein SCO0839|
          Length = 705

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = +2

Query: 188 VLRAARPDRPHGA-------GRPGAGVPHERDGRLTL 277
           VLRAAR  R   +       GRPGAG P   DGR+ +
Sbjct: 439 VLRAARDTRGVASAAPVTDSGRPGAGTPLVVDGRVRI 475

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 249  GTP-APGRPAPCGRSGRAARSTET--AGASRPIRP 154
            G P APG P P G +G++    ET  AG + P+ P
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP 1080

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>YD85_SCHPO (Q10410) Hypothetical protein C1F3.05 in chromosome I|
          Length = 510

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +3

Query: 222 EPAAQAPASRTNATA-ASHSAITSLS------APGLVIGGKKSQKAVTSTNASVSGVATS 380
           EPA  +P+  TN  A  S S ++SLS      + G +     SQ A+ +TN+S++ +  S
Sbjct: 342 EPAVPSPSLPTNVPANQSLSMLSSLSNSMSSTSNGALNSPSYSQAAIPNTNSSLTSILQS 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,711,562
Number of Sequences: 219361
Number of extensions: 1013886
Number of successful extensions: 4920
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 4515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4907
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result