| Clone Name | rbast28g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472919.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1038 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Minus Query: 219 acggagccggccgcccaggcgccggcgtcccgcacgaacgcgacggccgcctcacactcg 278 |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| | |||| Sbjct: 1013 acggaggcggccgcccagatgccggtgtcccgcacgaacgcgacgaccgcctcgctctcg 954 Query: 279 gcgatcacgagcttgtcggccccgggcctcgtgatcggcgggaagaagagccagaa 334 |||||||| | ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 953 gcgatcaccaccttgtcggcgccggccctcgtgatcggcgggaagaagagccagaa 898
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 219 acggagccggccgcccaggcgccggcgtcccgcacgaacgcgacggccgcctcacactcg 278 |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| | |||| Sbjct: 73668 acggaggcggccgcccagatgccggtgtcccgcacgaacgcgacgaccgcctcgctctcg 73727 Query: 279 gcgatcacgagcttgtcggccccgggcctcgtgatcggcgggaagaagagccagaa 334 |||||||| | ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 73728 gcgatcaccaccttgtcggcgccggccctcgtgatcggcgggaagaagagccagaa 73783 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 240 ccggcgtcccgcacgaacgcgacggccgcctcacactcggcgatcacgagcttgtcggcc 299 ||||||||||| ||||||||||| ||||| | ||| |||||||| | | |||| | | Sbjct: 70781 ccggcgtcccgaacgaacgcgaccatggcctcgctctccgcgatcaccaccctgtcagtc 70840 Query: 300 ccgggcctcgtgatcggcgggaagaagagccagaaggccgtcacgagcacgaacgccagc 359 |||| ||||||||||||||||| || ||||||||| ||||| | || | |||||||||| Sbjct: 70841 ccggtcctcgtgatcggcgggacgatgagccagaaccccgtcgctaggatgaacgccagc 70900 Query: 360 gtcag 364 ||||| Sbjct: 70901 gtcag 70905
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 219 acggagccggccgcccaggcgccggcgtcccgcacgaacgcgacggccgcctcacactcg 278 |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| | |||| Sbjct: 24076689 acggaggcggccgcccagatgccggtgtcccgcacgaacgcgacgaccgcctcgctctcg 24076748 Query: 279 gcgatcacgagcttgtcggccccgggcctcgtgatcggcgggaagaagagccagaa 334 |||||||| | ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 24076749 gcgatcaccaccttgtcggcgccggccctcgtgatcggcgggaagaagagccagaa 24076804 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 240 ccggcgtcccgcacgaacgcgacggccgcctcacactcggcgatcacgagcttgtcggcc 299 ||||||||||| ||||||||||| ||||| | ||| |||||||| | | |||| | | Sbjct: 24073802 ccggcgtcccgaacgaacgcgaccatggcctcgctctccgcgatcaccaccctgtcagtc 24073861 Query: 300 ccgggcctcgtgatcggcgggaagaagagccagaaggccgtcacgagcacgaacgccagc 359 |||| ||||||||||||||||| || ||||||||| ||||| | || | |||||||||| Sbjct: 24073862 ccggtcctcgtgatcggcgggacgatgagccagaaccccgtcgctaggatgaacgccagc 24073921 Query: 360 gtcag 364 ||||| Sbjct: 24073922 gtcag 24073926 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 312 atcggcgggaagaagagccagaa 334 ||||||||||||||||||||||| Sbjct: 11774046 atcggcgggaagaagagccagaa 11774024
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 219 acggagccggccgcccaggcgccggcgtcccgcacgaacgcgacggccgcctcacactcg 278 |||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| | |||| Sbjct: 55500 acggaggcggccgcccagatgccggtgtcccgcacgaacgcgacgaccgcctcgctctcg 55559 Query: 279 gcgatcacgagcttgtcggccccgggcctcgtgatcggcgggaagaagagccagaa 334 |||||||| | ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 55560 gcgatcaccaccttgtcggcgccggccctcgtgatcggcgggaagaagagccagaa 55615 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 240 ccggcgtcccgcacgaacgcgacggccgcctcacactcggcgatcacgagcttgtcggcc 299 ||||||||||| ||||||||||| ||||| | ||| |||||||| | | |||| | | Sbjct: 52640 ccggcgtcccgaacgaacgcgaccatggcctcgctctccgcgatcaccaccctgtcagtc 52699 Query: 300 ccgggcctcgtgatcggcgggaagaagagccagaaggccgtcacgagcacgaacgccagc 359 |||| ||||||||||||||||| || ||||||||| ||||| | || | |||||||||| Sbjct: 52700 ccggtcctcgtgatcggcgggacgatgagccagaaccccgtcgctaggatgaacgccagc 52759 Query: 360 gtcag 364 ||||| Sbjct: 52760 gtcag 52764
>ref|XM_472918.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 240 ccggcgtcccgcacgaacgcgacggccgcctcacactcggcgatcacgagcttgtcggcc 299 ||||||||||| ||||||||||| ||||| | ||| |||||||| | | |||| | | Sbjct: 1001 ccggcgtcccgaacgaacgcgaccatggcctcgctctccgcgatcaccaccctgtcagtc 942 Query: 300 ccgggcctcgtgatcggcgggaagaagagccagaaggccgtcacgagcacgaacgccagc 359 |||| ||||||||||||||||| || ||||||||| ||||| | || | |||||||||| Sbjct: 941 ccggtcctcgtgatcggcgggacgatgagccagaaccccgtcgctaggatgaacgccagc 882 Query: 360 gtcag 364 ||||| Sbjct: 881 gtcag 877
>dbj|AK109152.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F11, full insert sequence Length = 1321 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 240 ccggcgtcccgcacgaacgcgacggccgcctcacactcggcgatcacgagcttgtcggcc 299 ||||||||||| ||||||||||| ||||| | ||| |||||||| | | |||| | | Sbjct: 1067 ccggcgtcccgaacgaacgcgaccatggcctcgctctccgcgatcaccaccctgtcagtc 1008 Query: 300 ccgggcctcgtgatcggcgggaagaagagccagaaggccgtcacgagcacgaacgccagc 359 |||| ||||||||||||||||| || ||||||||| ||||| | || | |||||||||| Sbjct: 1007 ccggtcctcgtgatcggcgggacgatgagccagaaccccgtcgctaggatgaacgccagc 948 Query: 360 gtcag 364 ||||| Sbjct: 947 gtcag 943
>ref|XM_465436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1602 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 cgggaagaagagccagaaggccgtcacgagcacgaacgccagcgtcagcgg 367 |||||||||||||||||| ||||| || |||||||||||| |||||||| Sbjct: 971 cgggaagaagagccagaaccccgtcccggccacgaacgccagagtcagcgg 921
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 cgggaagaagagccagaaggccgtcacgagcacgaacgccagcgtcagcgg 367 |||||||||||||||||| ||||| || |||||||||||| |||||||| Sbjct: 15145473 cgggaagaagagccagaaccccgtcccggccacgaacgccagagtcagcgg 15145423
>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07 Length = 146008 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 cgggaagaagagccagaaggccgtcacgagcacgaacgccagcgtcagcgg 367 |||||||||||||||||| ||||| || |||||||||||| |||||||| Sbjct: 29248 cgggaagaagagccagaaccccgtcccggccacgaacgccagagtcagcgg 29198
>dbj|AK064156.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F04, full insert sequence Length = 1615 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 317 cgggaagaagagccagaaggccgtcacgagcacgaacgccagcgtcagcgg 367 |||||||||||||||||| ||||| || |||||||||||| |||||||| Sbjct: 971 cgggaagaagagccagaaccccgtcccggccacgaacgccagagtcagcgg 921
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 312 atcggcgggaagaagagccagaa 334 ||||||||||||||||||||||| Sbjct: 96824 atcggcgggaagaagagccagaa 96802
>dbj|AK108867.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C03, full insert sequence Length = 1268 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 312 atcggcgggaagaagagccagaa 334 ||||||||||||||||||||||| Sbjct: 1021 atcggcgggaagaagagccagaa 999
>gb|AC165229.7| Mus musculus chromosome 1, clone RP23-47K10, complete sequence Length = 218929 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 63 ggatttgtttcgatacattttcctaa 88 |||||||||| ||||||||||||||| Sbjct: 218774 ggatttgtttagatacattttcctaa 218749
>gb|AC122204.3| Mus musculus BAC clone RP23-73N8 from chromosome 1, complete sequence Length = 197949 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 63 ggatttgtttcgatacattttcctaa 88 |||||||||| ||||||||||||||| Sbjct: 121611 ggatttgtttagatacattttcctaa 121636
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 220 cggagccggccgcccaggcgccggcg 245 ||||||||||||||||||| |||||| Sbjct: 410754 cggagccggccgcccaggccccggcg 410779
>ref|XM_366710.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02786.4) partial mRNA Length = 1251 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 agaaggccgtcacgagcacga 351 ||||||||||||||||||||| Sbjct: 830 agaaggccgtcacgagcacga 810
>gb|DQ127574.1| Emiliania huxleyi virus 163 clone combi155+156.seq partial sequence Length = 3207 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 aatacgcaaacaaattgccgc 130 ||||||||||||||||||||| Sbjct: 820 aatacgcaaacaaattgccgc 800
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 241 cggcgtcccgcacgaacgcgacggc 265 ||||||||||||||||||| ||||| Sbjct: 223172 cggcgtcccgcacgaacgctacggc 223196
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 aatacgcaaacaaattgccgc 130 ||||||||||||||||||||| Sbjct: 221852 aatacgcaaacaaattgccgc 221832
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgcacgaacgcgacggccgc 268 |||||||||||||||||||| Sbjct: 984758 cgcacgaacgcgacggccgc 984739
>ref|XM_417423.1| PREDICTED: Gallus gallus similar to neural zinc finger protein NZF-2b (LOC419249), mRNA Length = 1646 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcgggaagaagagccagaag 335 |||||||||||||||||||| Sbjct: 488 gcgggaagaagagccagaag 507
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgcacgaacgcgacggccgc 268 |||||||||||||||||||| Sbjct: 2026513 cgcacgaacgcgacggccgc 2026494
>ref|NM_014994.1| Homo sapiens mitogen activated protein kinase binding protein 1 (MAPKBP1), mRNA Length = 7174 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2430 cgccagcgtcagcggggcggcaagcagc 2457
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gccggccgcccaggcgccgg 243 |||||||||||||||||||| Sbjct: 434235 gccggccgcccaggcgccgg 434216
>gb|BC036660.1| Homo sapiens mitogen activated protein kinase binding protein 1, mRNA (cDNA clone MGC:33222 IMAGE:5266613), complete cds Length = 4824 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2325 cgccagcgtcagcggggcggcaagcagc 2352
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgcacgaacgcgacggccgc 268 |||||||||||||||||||| Sbjct: 2350154 cgcacgaacgcgacggccgc 2350173
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccagcgtcagcggggtggca 374 |||||||||||||||||||| Sbjct: 3619927 ccagcgtcagcggggtggca 3619908
>emb|BX950844.1| Gallus gallus finished cDNA, clone ChEST672b12 Length = 1100 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcgggaagaagagccagaag 335 |||||||||||||||||||| Sbjct: 489 gcgggaagaagagccagaag 508
>gb|AC020659.5|AC020659 Homo sapiens chromosome 15 clone RP11-23P13 map 15q14, complete sequence Length = 139376 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 59772 cgccagcgtcagcggggcggcaagcagc 59799
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cgagcacgaacgccagcgtcagcg 366 ||||||||| |||||||||||||| Sbjct: 3946007 cgagcacgaccgccagcgtcagcg 3946030
>dbj|AB177850.1| Homo sapiens mRNA for KIAA0596 splice variant 1 Length = 5520 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 1358 cgccagcgtcagcggggcggcaagcagc 1385
>gb|AY585170.1| Plenoculus sp. Plsp810 elongation factor-1 alpha gene, partial cds Length = 1616 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gcacgaacgcgacggccgcc 269 |||||||||||||||||||| Sbjct: 432 gcacgaacgcgacggccgcc 413
>emb|BX648786.1|HSM808937 Homo sapiens mRNA; cDNA DKFZp686A24169 (from clone DKFZp686A24169) Length = 6647 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2461 cgccagcgtcagcggggcggcaagcagc 2488
>emb|BX640787.1|HSM806877 Homo sapiens mRNA; cDNA DKFZp686K2432 (from clone DKFZp686K2432) Length = 5939 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2675 cgccagcgtcagcggggcggcaagcagc 2702
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgcacgaacgcgacggccgc 268 |||||||||||||||||||| Sbjct: 2990526 cgcacgaacgcgacggccgc 2990545
>emb|AL833267.1|HSM804580 Homo sapiens mRNA; cDNA DKFZp451I0110 (from clone DKFZp451I0110) Length = 7174 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2430 cgccagcgtcagcggggcggcaagcagc 2457
>dbj|AB011168.2| Homo sapiens mRNA for KIAA0596 protein, partial cds Length = 7161 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 cgccagcgtcagcggggtggcaaccagc 380 ||||||||||||||||| ||||| |||| Sbjct: 2438 cgccagcgtcagcggggcggcaagcagc 2465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,209,504 Number of Sequences: 3902068 Number of extensions: 2209504 Number of successful extensions: 43365 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42529 Number of HSP's gapped (non-prelim): 831 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)