ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast28f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLF_ARATH (P93831) Polycomb group protein CURLY LEAF (Protein IN... 28 7.4
2FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.... 27 9.7

>CLF_ARATH (P93831) Polycomb group protein CURLY LEAF (Protein INCURVATA 1)|
           (Protein photoperiod insensitive flowering) (Protein SET
           DOMAIN GROUP 1)
          Length = 902

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 136 FS*CHCAGWRCRGRKFECLKCHSDSICSLIC*PRVCNGFMIL 11
           F  CHCA  +CR R+  C     +      C P VC    ++
Sbjct: 688 FRGCHCAKSQCRSRQCPCFAADRE------CDPDVCRNCWVI 723



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>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
           Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
           (EC 1.1.1.100) (Beta-ketoacyl reductase);
           3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
           (Beta-ketoacyl synth
          Length = 1885

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 214 TPSAPRATDPTPATEAA 164
           TPSAP A  PTPA  AA
Sbjct: 109 TPSAPAAATPTPAAAAA 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,119,531
Number of Sequences: 219361
Number of extensions: 699332
Number of successful extensions: 2078
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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