>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0026G02, complete sequence
          Length = 123472

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 167    gtcagtaattcttatttacaatttctgacattttggcggtgtatgcacaatgctca 222
              ||||| ||||| |||||||||||||||||  ||| ||||||||||||||| |||||
Sbjct: 119211 gtcaggaattcatatttacaatttctgac-gtttcgcggtgtatgcacaaagctca 119157

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 167   gtcagtaattcttatttacaatttctgacattttggcggtgtatgcacaatgctca 222
             ||||| ||||| |||||||||||||||||  ||| ||||||||||||||| |||||
Sbjct: 18128 gtcaggaattcatatttacaatttctgac-gtttcgcggtgtatgcacaaagctca 18074

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 167      gtcagtaattcttatttacaatttctgacattttggcggtgtatgcacaatgctca 222
                ||||| ||||| |||||||||||||||||  ||| ||||||||||||||| |||||
Sbjct: 22758411 gtcaggaattcatatttacaatttctgac-gtttcgcggtgtatgcacaaagctca 22758357

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 167      gtcagtaattcttatttacaatttctgacattttggcggtgtatgcacaatgctca 222
                ||||| ||||| |||||||||||||||||  ||| ||||||||||||||| |||||
Sbjct: 23068321 gtcaggaattcatatttacaatttctgac-gtttcgcggtgtatgcacaaagctca 23068267

>gb|AF302466.1|AF302466 Pasteurella multocida P1234 region 2 capsule biosynthesis gene
           cluster, partial sequence
          Length = 11745

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 25  tatttattttgtaacagcccatattttt 52
           |||||||||||||||||| |||||||||
Sbjct: 770 tatttattttgtaacagctcatattttt 743

>gb|AC121875.2| Mus musculus BAC clone RP24-125O20 from 17, complete sequence
          Length = 200763

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 179   tatttacaatttctgacatttt 200
             ||||||||||||||||||||||
Sbjct: 33233 tatttacaatttctgacatttt 33254

>emb|AL591507.6| Human DNA sequence from clone RP11-289C14 on chromosome 6 Contains
            part of the gene for a novel protein containing CH
            domains (contains KIAA1756, FLJ30878 and the likely
            ortholog of rat CPG2), complete sequence
          Length = 17586

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 7    tgaaattgatgagcatcatatttatt 32
            |||||||||||||| |||||||||||
Sbjct: 7537 tgaaattgatgagcttcatatttatt 7512

>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 296   cggcgttgatgctggtggccgg 317
             ||||||||||||||||||||||
Sbjct: 64638 cggcgttgatgctggtggccgg 64659

>dbj|AK148304.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370084A13 product:methylmalonyl-Coenzyme A mutase,
            full insert sequence
          Length = 1777

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 179  tatttacaatttctgacatttt 200
            ||||||||||||||||||||||
Sbjct: 1496 tatttacaatttctgacatttt 1517

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 291     ctcgtcggcgttgatgctggtggcc 315
               |||||||||| ||||||||||||||
Sbjct: 2771744 ctcgtcggcgatgatgctggtggcc 2771768

>emb|Z92803.1|CEK01G5 Caenorhabditis elegans Cosmid K01G5, complete sequence
          Length = 19442

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   atttacaatttctgacatttt 200
             |||||||||||||||||||||
Sbjct: 12238 atttacaatttctgacatttt 12258

>emb|AL021171.1|CEH04D03 Caenorhabditis elegans Fosmid H04D03, complete sequence
          Length = 21083

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  atttacaatttctgacatttt 200
            |||||||||||||||||||||
Sbjct: 8618 atttacaatttctgacatttt 8638

>emb|AL513353.7| Human DNA sequence from clone RP11-309N12 on chromosome 9 Contains part
             of the AUH gene for AU RNA binding protein/enoyl-Coenzyme
             A hydratase, complete sequence
          Length = 105225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    ttttgtaacagcccatatttt 51
             |||||||||||||||||||||
Sbjct: 39390 ttttgtaacagcccatatttt 39410

>gb|BC045178.2| Homo sapiens cDNA clone IMAGE:5284379
          Length = 3814

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 31   ttttgtaacagcccatatttt 51
            |||||||||||||||||||||
Sbjct: 2062 ttttgtaacagcccatatttt 2042

>gb|AF106582.1| Caenorhabditis elegans cosmid W05F2, complete sequence
          Length = 34852

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   atttacaatttctgacatttt 200
             |||||||||||||||||||||
Sbjct: 14747 atttacaatttctgacatttt 14727

>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence
          Length = 210563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 178    ttatttacaatttctgacatt 198
              |||||||||||||||||||||
Sbjct: 144446 ttatttacaatttctgacatt 144426

>gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, complete sequence
          Length = 195116

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   tattttgtaacagcccatat 48
            ||||||||||||||||||||
Sbjct: 6173 tattttgtaacagcccatat 6154

>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete
              sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     atcatatttattttgtaaca 40
              ||||||||||||||||||||
Sbjct: 128736 atcatatttattttgtaaca 128717

>gb|AC148481.9| Medicago truncatula clone mth2-36d21, complete sequence
          Length = 105513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   cttcactccaaaaactttca 246
             ||||||||||||||||||||
Sbjct: 92502 cttcactccaaaaactttca 92483

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     acgacgccgacctgcctacc 378
               ||||||||||||||||||||
Sbjct: 2075334 acgacgccgacctgcctacc 2075315

>gb|AC140856.30| Botryllus schlosseri clone subsf-568h21, complete sequence
          Length = 38591

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 7     tgaaattgatgagcatcatatttattttgtaa 38
             |||||||||||||||| |||||| ||||||||
Sbjct: 23312 tgaaattgatgagcatgatattt-ttttgtaa 23282

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 185     caatttctgacattttggcggtgt 208
               ||||||||| ||||||||||||||
Sbjct: 1312273 caatttctgccattttggcggtgt 1312250

>gb|AC102496.7| Mus musculus chromosome 18, clone RP24-567O18, complete sequence
          Length = 139461

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tattttgtaacagcccatat 48
             ||||||||||||||||||||
Sbjct: 33510 tattttgtaacagcccatat 33491

>gb|AF169324.1|AF169324 Pasteurella multocida capsule biosynthesis gene cluster, complete
             sequence
          Length = 20418

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 25    tatttattttgtaacagcccatattttt 52
             |||||||||||| ||||| |||||||||
Sbjct: 18884 tatttattttgttacagctcatattttt 18911

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atgagcatcatatttatttt 34
             ||||||||||||||||||||
Sbjct: 59448 atgagcatcatatttatttt 59467

>dbj|AP006130.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT36O13, TM0226,
             complete sequence
          Length = 140838

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    atcatatttattttgtaaca 40
             ||||||||||||||||||||
Sbjct: 72474 atcatatttattttgtaaca 72455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,773,379
Number of Sequences: 3902068
Number of extensions: 3773379
Number of successful extensions: 86592
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86406
Number of HSP's gapped (non-prelim): 183
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)