ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast28b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103738.1| Zea mays PCO146589 mRNA sequence 131 2e-27
2ref|XM_471066.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
5emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 115 1e-22
6gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence 111 2e-21
7gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence 84 4e-13
8dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.37
9gb|AC102873.10| Mus musculus chromosome 17, clone RP24-536C15, c... 42 1.5
10gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, comple... 42 1.5
11emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chr... 42 1.5
12emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
13emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
14ref|XM_593790.2| PREDICTED: Bos taurus vav 2 protein (LOC515718)... 40 5.8
15gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 5.8
16gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome... 40 5.8
17gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, co... 40 5.8
18gb|DQ125495.1| Bos taurus vav 2 protein mRNA, partial cds 40 5.8
19gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete ge... 40 5.8
20gb|AC154320.2| Mus musculus BAC clone RP23-308E16 from chromosom... 40 5.8
21emb|CT009700.8| Mouse DNA sequence from clone RP23-114M15 on chr... 40 5.8 
>gb|AY103738.1| Zea mays PCO146589 mRNA sequence
          Length = 1787

 Score =  131 bits (66), Expect = 2e-27
 Identities = 108/122 (88%)
 Strand = Plus / Minus

                                                                        
Query: 306  gtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaag 365
            |||||||| ||||||||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 1523 gtgccttgggtgaacttgggatcctcgcacctgtacttaccatcggggccgataccaaag 1464

                                                                        
Query: 366  cccttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctcgcg 425
            || ||||| ||||||||||||||||||| ||||||||| || || ||  |||||||||||
Sbjct: 1463 cctttggggtcggcaaacacgttctccaacagctggctgcgcggcggatgcgggctcgcg 1404

              
Query: 426  tc 427
            ||
Sbjct: 1403 tc 1402
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>ref|XM_471066.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1278

 Score =  115 bits (58), Expect = 1e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                        
Query: 303  gccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgcca 362
            ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||| || |||
Sbjct: 1268 gccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggccaattcca 1209

                                                                        
Query: 363  aagcccttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctc 422
            |||||||||||||| |  |||||||| ||||| |||||||| || || ||||||||||| 
Sbjct: 1208 aagcccttgggatctgagaacacgttttccagaagctggctccggggagggagcgggctt 1149

                      
Query: 423  gcgtcggcga 432
            ||||| ||||
Sbjct: 1148 gcgtcagcga 1139
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  115 bits (58), Expect = 1e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                           
Query: 303     gccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgcca 362
               ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||| || |||
Sbjct: 1126393 gccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggccaattcca 1126334

                                                                           
Query: 363     aagcccttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctc 422
               |||||||||||||| |  |||||||| ||||| |||||||| || || ||||||||||| 
Sbjct: 1126333 aagcccttgggatctgagaacacgttttccagaagctggctccggggagggagcgggctt 1126274

                         
Query: 423     gcgtcggcga 432
               ||||| ||||
Sbjct: 1126273 gcgtcagcga 1126264



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 95       catttcttgggtaaaaaactg 115
                |||||||||||||||||||||
Sbjct: 30276636 catttcttgggtaaaaaactg 30276656
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>dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M21, full
            insert sequence
          Length = 1736

 Score =  115 bits (58), Expect = 1e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                        
Query: 303  gccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgcca 362
            ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||| || |||
Sbjct: 1408 gccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggccaattcca 1349

                                                                        
Query: 363  aagcccttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctc 422
            |||||||||||||| |  |||||||| ||||| |||||||| || || ||||||||||| 
Sbjct: 1348 aagcccttgggatctgagaacacgttttccagaagctggctccggggagggagcgggctt 1289

                      
Query: 423  gcgtcggcga 432
            ||||| ||||
Sbjct: 1288 gcgtcagcga 1279
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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score =  115 bits (58), Expect = 1e-22
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                         
Query: 303   gccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgcca 362
             ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||| || |||
Sbjct: 68775 gccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggccaattcca 68716

                                                                         
Query: 363   aagcccttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctc 422
             |||||||||||||| |  |||||||| ||||| |||||||| || || ||||||||||| 
Sbjct: 68715 aagcccttgggatctgagaacacgttttccagaagctggctccggggagggagcgggctt 68656

                       
Query: 423   gcgtcggcga 432
             ||||| ||||
Sbjct: 68655 gcgtcagcga 68646
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>gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence
          Length = 851

 Score =  111 bits (56), Expect = 2e-21
 Identities = 104/120 (86%)
 Strand = Plus / Minus

                                                                       
Query: 308 gccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaagcc 367
           |||||| | ||||||||| ||||| ||||||||||| || || ||||| || ||||||||
Sbjct: 599 gccttgggggaacttgggatcctcccacctgtacttaccatcggggccaataccaaagcc 540

                                                                       
Query: 368 cttgggatcggcaaacacgttctccagcagctggcttcgtggggggagcgggctcgcgtc 427
            ||||| ||||||||||||||||||| ||||||||| || ||||| || |||||||||||
Sbjct: 539 tttggggtcggcaaacacgttctccaacagctggctgcgcgggggaagggggctcgcgtc 480
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>gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence
          Length = 1692

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 306  gtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaag 365
            |||||||  ||||||||||| || || || |||||| | || ||||| || |||||||||
Sbjct: 1423 gtgccttcggtgaacttgggatcttcacatctgtaccttccatcaggcccaatgccaaag 1364

                                                  
Query: 366  cccttgggatcggcaaacacgttctccagcagctggct 403
            ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1363 ccctttggatcagcaaacacgttctcgagcagctggct 1326
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>dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-693N9, complete
              sequence
          Length = 172081

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 155    attacacagtgatatatgacct 176
              ||||||||||||||||||||||
Sbjct: 148689 attacacagtgatatatgacct 148710
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>gb|AC102873.10| Mus musculus chromosome 17, clone RP24-536C15, complete sequence
          Length = 155210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     caacataaattctgtaccaat 38
              |||||||||||||||||||||
Sbjct: 150796 caacataaattctgtaccaat 150776
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>gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, complete sequence
          Length = 172611

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    agcaatgaattacacagtgat 167
              |||||||||||||||||||||
Sbjct: 121429 agcaatgaattacacagtgat 121409
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>emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chromosome 17, complete
             sequence
          Length = 236078

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    caacataaattctgtaccaat 38
             |||||||||||||||||||||
Sbjct: 61301 caacataaattctgtaccaat 61321
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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     catttcttgggtaaaaaactg 115
              |||||||||||||||||||||
Sbjct: 172949 catttcttgggtaaaaaactg 172969
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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    catttcttgggtaaaaaactg 115
             |||||||||||||||||||||
Sbjct: 26532 catttcttgggtaaaaaactg 26552
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>ref|XM_593790.2| PREDICTED: Bos taurus vav 2 protein (LOC515718), partial mRNA
          Length = 1451

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 ggcttcgtggggggagcggg 419
           ||||||||||||||||||||
Sbjct: 286 ggcttcgtggggggagcggg 267
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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tgaactggagaacatttctt 102
              ||||||||||||||||||||
Sbjct: 123197 tgaactggagaacatttctt 123178
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>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence
          Length = 213381

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     aacataaattctgtaccaat 38
              ||||||||||||||||||||
Sbjct: 142065 aacataaattctgtaccaat 142084
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>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence
          Length = 216911

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aacataaattctgtaccaat 38
              ||||||||||||||||||||
Sbjct: 158030 aacataaattctgtaccaat 158011
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>gb|DQ125495.1| Bos taurus vav 2 protein mRNA, partial cds
          Length = 320

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 ggcttcgtggggggagcggg 419
           ||||||||||||||||||||
Sbjct: 41  ggcttcgtggggggagcggg 22
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>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome
          Length = 335593

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    ttgggatcggcaaacacgtt 388
              ||||||||||||||||||||
Sbjct: 178294 ttgggatcggcaaacacgtt 178313
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>gb|AC154320.2| Mus musculus BAC clone RP23-308E16 from chromosome 13, complete
             sequence
          Length = 202134

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    atacatgtagagtttactgtagaa 75
             |||||||||||| |||||||||||
Sbjct: 22199 atacatgtagagattactgtagaa 22222
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>emb|CT009700.8| Mouse DNA sequence from clone RP23-114M15 on chromosome 13, complete
              sequence
          Length = 184143

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 52     atacatgtagagtttactgtagaa 75
              |||||||||||| |||||||||||
Sbjct: 174998 atacatgtagagattactgtagaa 175021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,396,520
Number of Sequences: 3902068
Number of extensions: 3396520
Number of successful extensions: 59845
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59776
Number of HSP's gapped (non-prelim): 69
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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