ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast27g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 159 9e-36
2gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome... 159 9e-36
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
4dbj|AK110976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
5dbj|AK100777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
6dbj|AK060575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 9e-36
7gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, com... 50 0.006
8dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, comp... 50 0.006
9gb|BT024134.1| Zea mays clone EL01N0446D12 mRNA sequence 46 0.094
10emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 44 0.37
11emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 44 0.37
12gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, comple... 44 0.37
13ref|XM_464727.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
14ref|XM_464728.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
15gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 1.5
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
18dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AK072080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
20dbj|AK068836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
21dbj|AK067205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
22gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
23ref|XM_475812.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
24ref|NM_184882.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
25ref|NM_184884.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
26ref|XM_473536.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
27gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cance... 40 5.8
28gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Can... 40 5.8
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
30gb|AC116017.6| Homo sapiens chromosome 18, clone RP11-57J16, com... 40 5.8
31emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on ch... 40 5.8
32emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123... 40 5.8
33emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
34dbj|AK139308.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 5.8
35gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E... 40 5.8
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
37dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AB185519.1| Uncultured rumen bacterium gene for 16S rRNA, pa... 40 5.8
39gb|AC080129.26| Homo sapiens 3 BAC RP11-135A1 (Roswell Park Canc... 40 5.8
40gb|AE004785.1| Pseudomonas aeruginosa PAO1, section 346 of 529 o... 40 5.8
41dbj|AK099933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
42dbj|AK060659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
43emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on ch... 40 5.8
44dbj|AB028129.1| Oryza sativa mRNA for Dof zinc finger protein, c... 40 5.8 
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Plus

                                                                         
Query: 316   aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
             |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 95105 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 95164

                                                                     
Query: 376   gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
             | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 95165 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 95220
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>gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009L15, complete sequence
          Length = 137570

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Plus

                                                                         
Query: 316   aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
             |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13652 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 13711

                                                                     
Query: 376   gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
             | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 13712 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 13767
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Plus

                                                                            
Query: 316      aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
                |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 16882609 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 16882668

                                                                        
Query: 376      gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
                | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 16882669 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 16882724



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 201      cggacggcgacgtcgcgcgc 220
                ||||||||||||||||||||
Sbjct: 26683772 cggacggcgacgtcgcgcgc 26683753
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>dbj|AK110976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C04, full
            insert sequence
          Length = 1422

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Plus

                                                                        
Query: 316  aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1172 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 1231

                                                                    
Query: 376  gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
            | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 1232 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 1287
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>dbj|AK100777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120E20, full
            insert sequence
          Length = 1557

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Minus

                                                                        
Query: 316  aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1473 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 1414

                                                                    
Query: 376  gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
            | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 1413 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 1358
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>dbj|AK060575.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D10, full
            insert sequence
          Length = 1432

 Score =  159 bits (80), Expect = 9e-36
 Identities = 107/116 (92%)
 Strand = Plus / Minus

                                                                        
Query: 316  aggacgccggcgagtggaagaagaggcagaccgccgagcagtcgtcgacggcgatgcccc 375
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1102 aggacggcggcgagtggaagaagaggcagatcgccgagcagtcgtcgacggcgatgcccc 1043

                                                                    
Query: 376  gccgcttgcgcctccacccgcggacggcgcactcgacgaggcgtttcgccgccttc 431
            | ||||||||||||||  | ||||||||| |||||||||| || ||||||||||||
Sbjct: 1042 ggcgcttgcgcctccatgcccggacggcgaactcgacgagccgcttcgccgccttc 987
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>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence
          Length = 210205

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 347    cgccgagcagtcgtcgacggcgatg 371
              |||||||||||||||||||||||||
Sbjct: 127999 cgccgagcagtcgtcgacggcgatg 128023
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>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence
          Length = 271577

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 347    cgccgagcagtcgtcgacggcgatg 371
              |||||||||||||||||||||||||
Sbjct: 140016 cgccgagcagtcgtcgacggcgatg 140040
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>gb|BT024134.1| Zea mays clone EL01N0446D12 mRNA sequence
          Length = 1184

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 335 gaagaggcagaccgccgagcagtcgtcgacg 365
           |||||||||||| || |||||||||||||||
Sbjct: 789 gaagaggcagacggcggagcagtcgtcgacg 759
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 350    cgagcagtcgtcgacggcgatg 371
              ||||||||||||||||||||||
Sbjct: 216956 cgagcagtcgtcgacggcgatg 216935
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 105     ggtgatccaccagcagcagttg 126
               ||||||||||||||||||||||
Sbjct: 2293759 ggtgatccaccagcagcagttg 2293738
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>gb|AC150560.5| Mus musculus BAC clone RP23-16I14 from 15, complete sequence
          Length = 208801

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 251   tgggtttgctttttccttttcc 272
             ||||||||||||||||||||||
Sbjct: 82246 tgggtttgctttttccttttcc 82225
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>ref|XM_464727.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 329  gtggaagaagaggcagaccgccgagcagtcgtc 361
            ||||| |||||||||||| || |||||||||||
Sbjct: 1297 gtggaggaagaggcagacggcggagcagtcgtc 1265
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>ref|XM_464728.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2257

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 329  gtggaagaagaggcagaccgccgagcagtcgtc 361
            ||||| |||||||||||| || |||||||||||
Sbjct: 1696 gtggaggaagaggcagacggcggagcagtcgtc 1664
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 10      acaaaaagcgtcttgtttcttctgc 34
               |||||||||||||||||||| ||||
Sbjct: 2804072 acaaaaagcgtcttgtttctgctgc 2804096
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 329     gtggaagaagaggcagaccgccgagcagtcgtc 361
               ||||| |||||||||||| || |||||||||||
Sbjct: 6958342 gtggaggaagaggcagacggcggagcagtcgtc 6958310
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 350     cgagcagtcgtcgacggcgat 370
               |||||||||||||||||||||
Sbjct: 6179666 cgagcagtcgtcgacggcgat 6179686



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 350     cgagcagtcgtcgacggcgat 370
               |||||||||||||||||||||
Sbjct: 6171826 cgagcagtcgtcgacggcgat 6171846
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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470A03
          Length = 133167

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 329   gtggaagaagaggcagaccgccgagcagtcgtc 361
             ||||| |||||||||||| || |||||||||||
Sbjct: 51964 gtggaggaagaggcagacggcggagcagtcgtc 51932
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>dbj|AK072080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I15, full
           insert sequence
          Length = 1202

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 329 gtggaagaagaggcagaccgccgagcagtcgtc 361
           ||||| |||||||||||| || |||||||||||
Sbjct: 165 gtggaggaagaggcagacggcggagcagtcgtc 133
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>dbj|AK068836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159P20, full
            insert sequence
          Length = 2255

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 329  gtggaagaagaggcagaccgccgagcagtcgtc 361
            ||||| |||||||||||| || |||||||||||
Sbjct: 1694 gtggaggaagaggcagacggcggagcagtcgtc 1662
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>dbj|AK067205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D23, full
            insert sequence
          Length = 1846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 329  gtggaagaagaggcagaccgccgagcagtcgtc 361
            ||||| |||||||||||| || |||||||||||
Sbjct: 1297 gtggaggaagaggcagacggcggagcagtcgtc 1265
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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
             complete sequence
          Length = 115808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   cggacggcgacgtcgcgcgc 220
             ||||||||||||||||||||
Sbjct: 64769 cggacggcgacgtcgcgcgc 64750
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>ref|XM_475812.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1605

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 cggacggcgacgtcgcgcgc 220
           ||||||||||||||||||||
Sbjct: 40  cggacggcgacgtcgcgcgc 59
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>ref|NM_184882.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 cggacggcgacgtcgcgcgc 220
           ||||||||||||||||||||
Sbjct: 287 cggacggcgacgtcgcgcgc 306
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>ref|NM_184884.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 cggacggcgacgtcgcgcgc 220
           ||||||||||||||||||||
Sbjct: 275 cggacggcgacgtcgcgcgc 294
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>ref|XM_473536.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 ccgccgcttgcgcctccacc 393
           ||||||||||||||||||||
Sbjct: 941 ccgccgcttgcgcctccacc 922
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>gb|AC167221.9| Mus musculus 10 BAC RP23-3P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204841

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    tgggtttgctttttcctttt 270
              ||||||||||||||||||||
Sbjct: 147602 tgggtttgctttttcctttt 147583
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>gb|AC166082.11| Mus musculus 10 BAC RP23-150M2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 170819

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    tgggtttgctttttcctttt 270
              ||||||||||||||||||||
Sbjct: 160256 tgggtttgctttttcctttt 160237
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 201      cggacggcgacgtcgcgcgc 220
                ||||||||||||||||||||
Sbjct: 26687675 cggacggcgacgtcgcgcgc 26687694



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 201      cggacggcgacgtcgcgcgc 220
                ||||||||||||||||||||
Sbjct: 26671752 cggacggcgacgtcgcgcgc 26671771
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>gb|AC116017.6| Homo sapiens chromosome 18, clone RP11-57J16, complete sequence
          Length = 181626

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gatgggtttgctttttcctt 268
             ||||||||||||||||||||
Sbjct: 21685 gatgggtttgctttttcctt 21666
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>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
              kertain pseudogene, complete sequence
          Length = 122613

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 254    gtttgctttttccttttcccccat 277
              ||||| ||||||||||||||||||
Sbjct: 102016 gtttgttttttccttttcccccat 102039
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>emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123D4 on chromosome 20q12 Contains
              STSs and GSSs, complete sequence
          Length = 169243

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gggtttgctttttccttttc 271
              ||||||||||||||||||||
Sbjct: 120918 gggtttgctttttccttttc 120937
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>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
              complete sequence
          Length = 175163

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    ccgccgcttgcgcctccacc 393
              ||||||||||||||||||||
Sbjct: 157340 ccgccgcttgcgcctccacc 157359
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>dbj|AK139308.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730099L17 product:hypothetical
            protein, full insert sequence
          Length = 2881

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tcttgtttcttctgccattt 39
            ||||||||||||||||||||
Sbjct: 1239 tcttgtttcttctgccattt 1258
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>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete
             sequence
          Length = 140044

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   cggacggcgacgtcgcgcgc 220
             ||||||||||||||||||||
Sbjct: 86088 cggacggcgacgtcgcgcgc 86069



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   cggacggcgacgtcgcgcgc 220
             ||||||||||||||||||||
Sbjct: 70165 cggacggcgacgtcgcgcgc 70146
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 374      ccgccgcttgcgcctccacc 393
                ||||||||||||||||||||
Sbjct: 28508665 ccgccgcttgcgcctccacc 28508684
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 201      cggacggcgacgtcgcgcgc 220
                ||||||||||||||||||||
Sbjct: 26778998 cggacggcgacgtcgcgcgc 26779017



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 201      cggacggcgacgtcgcgcgc 220
                ||||||||||||||||||||
Sbjct: 26763075 cggacggcgacgtcgcgcgc 26763094
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>dbj|AB185519.1| Uncultured rumen bacterium gene for 16S rRNA, partial sequence,
           clone: F23-B04
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 ttttccttttcccccatgac 280
           ||||||||||||||||||||
Sbjct: 458 ttttccttttcccccatgac 439
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>gb|AC080129.26| Homo sapiens 3 BAC RP11-135A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89037

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gatccaccagcagcagttga 127
             ||||||||||||||||||||
Sbjct: 69727 gatccaccagcagcagttga 69746
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>gb|AE004785.1| Pseudomonas aeruginosa PAO1, section 346 of 529 of the complete
           genome
          Length = 14537

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 cagtcgtcgacggcgatgcc 373
           ||||||||||||||||||||
Sbjct: 649 cagtcgtcgacggcgatgcc 668
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>dbj|AK099933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119E02, full
            insert sequence
          Length = 4743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  cggacggcgacgtcgcgcgc 220
            ||||||||||||||||||||
Sbjct: 3383 cggacggcgacgtcgcgcgc 3402
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>dbj|AK060659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A11, full
            insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  ccgccgcttgcgcctccacc 393
            ||||||||||||||||||||
Sbjct: 1078 ccgccgcttgcgcctccacc 1059
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>emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on chromosome 2, complete
            sequence
          Length = 230116

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tcttgtttcttctgccattt 39
            ||||||||||||||||||||
Sbjct: 6458 tcttgtttcttctgccattt 6477
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>dbj|AB028129.1| Oryza sativa mRNA for Dof zinc finger protein, complete cds
          Length = 2316

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  ccgccgcttgcgcctccacc 393
            ||||||||||||||||||||
Sbjct: 1215 ccgccgcttgcgcctccacc 1196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,492,705
Number of Sequences: 3902068
Number of extensions: 3492705
Number of successful extensions: 71977
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71569
Number of HSP's gapped (non-prelim): 408
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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