ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast27e12 |
|---|---|
| Clone Library Name | barley_pub |
>PRP28_ASPFU (Q4WPE9) Pre-mRNA splicing ATP-dependent RNA helicase prp28 (EC| 3.6.1.-) Length = 796 Score = 32.0 bits (71), Expect = 0.39 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = +1 Query: 136 SNADPGMCRRRPPGGAIKT*REGKKRHARAPVPFVPSPDSAA----PPNHVVALPFPSFL 303 SN PG +PP ++ R P P P P+ +A PP+ V P P Sbjct: 6 SNGSPGAPVTQPPPEPLE----------RPPTPPPPPPEDSAAPPPPPDTSVPPPPPEDA 55 Query: 304 HTHSPPERKKK 336 PPE+KKK Sbjct: 56 PPAPPPEKKKK 66
>UBE4B_MOUSE (Q9ES00) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Ufd2a) Length = 1173 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 221 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 331 +PRS P P +LP+ F+ RT HQ E+ Sbjct: 349 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 385
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +2 Query: 221 EPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEK 331 +PRS P P +LP+ F+ RT HQ E+ Sbjct: 478 QPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEE 514
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = +2 Query: 116 ESAQFTKAMPTPGCVAAGLRGEQSKLDEKEKKDMHEPRSRS--SPHLTAPLHQIMSLPFP 289 E FTK P VA R +SK+ E K + +P P LT P H PF Sbjct: 976 EPGYFTK----PPLVAHASRSAESKVIEFGKSNFVQPMQGEVIRPPLTTPAHTTQPTPFK 1031 Query: 290 FLPSF 304 F +F Sbjct: 1032 FNSNF 1036
>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)| Length = 1297 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Frame = +1 Query: 220 RAPVPFVPSPDSAAPPNHVVALPF----PSFLHTHSPPE 324 R P+P P P PP H + PF P H H P+ Sbjct: 1174 RDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHPHRDPD 1212
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 226 PVPFVPSPDSAAPPNHV--VALPFPSFLHTHSPPE 324 P+P+ P P S AP +++ ALP+P T PPE Sbjct: 167 PMPYAPMPTSPAPQHNIGFPALPYP----TAPPPE 197
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 29.3 bits (64), Expect = 2.5 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = +2 Query: 134 KAMPTPGCVAAGLRGEQSKLDEKEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRT 313 KA PTP ++ LR D EKK EP+ S HL + M LP F T Sbjct: 825 KAKPTPPKRSSSLRKSDGNADISEKK---EPKISSGQHLPHSSRE-MKLPL----DFANT 876 Query: 314 PHQKE 328 P + E Sbjct: 877 PSRME 881
>YFAS1_CANGA (Q6FJ69) FAS1 domain-containing protein CAGL0M08734g precursor| Length = 253 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 170 LRGEQSKLDEKEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPS 301 L GE+S+L +K +MH P P+H+ + +P +L S Sbjct: 46 LDGEESRLLQKRDLEMHPPVDLGVYFSNRPIHRTIDVPDIYLDS 89
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 28.1 bits (61), Expect = 5.6 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 11/78 (14%) Frame = +3 Query: 117 NPRSLP-----------KQCRPRDVSPPASGGSNQNLTRRKKKTCTSPGPVRPLT*QRRS 263 +PR LP +Q PR ++PPA+GG + KT + GP Sbjct: 561 DPRRLPGANTPLPGLSHRQGWPRPLTPPAAGGLQNHTVGIIVKTENATGP---------- 610 Query: 264 TKSCRCPSLSFLPSHALP 317 CP S +P +LP Sbjct: 611 ---SSCPQRSLVPVPSLP 625
>MEF2B_HUMAN (Q02080) Myocyte-specific enhancer factor 2B (Serum response| factor-like protein 2) (XMEF2) (RSRFR2) Length = 365 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +1 Query: 226 PVPFVPSPDSAAPPNHVVALPFPSFLHTHSPP 321 P PF P+ A PP V L PS L + +PP Sbjct: 167 PSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
>STK11_HUMAN (Q15831) Serine/threonine-protein kinase 11 (EC 2.7.11.1)| (Serine/threonine-protein kinase LKB1) (NY-REN-19 antigen) Length = 433 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +1 Query: 205 KKRH--ARAPVPFVPSPDSAAPPNHVVALPFPSFLH 306 +K+H A APVP PSPD+ + +P+ LH Sbjct: 310 RKKHPPAEAPVPIPPSPDTKDRWRSMTVVPYLEDLH 345
>AMPH_RAT (O08838) Amphiphysin| Length = 683 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +1 Query: 202 GKKRHARAPVP---FVPSPDSAAPPNHVVALPFPSFLHTHSPPERKK 333 G R A+ P P P P A PNH +A P+ + SP + +K Sbjct: 253 GPLRIAKTPSPPEEASPLPSPTASPNHTLAPASPAPVRPRSPSQTRK 299
>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein| Length = 1729 Score = 28.1 bits (61), Expect = 5.6 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = +3 Query: 117 NPRSLPKQCRPRDVSPPA-----SGGSNQNLTRRKKKTCTSPGPVRPLT*QRRSTKSCRC 281 +P +L + RPR+ S S S + ++ K+C PG +PLT + KS Sbjct: 1652 SPSALKAKLRPRNRSAEEGELAESKSSQKESAVQRSKSCKVPGLGKPLTLPPKPEKSSGS 1711 Query: 282 PSLSFLPSHALPTRKKK 332 S AL +KKK Sbjct: 1712 EGSSPNWLQALKLKKKK 1728
>YIJ1_SCHPO (Q9UTM5) Hypothetical protein C1420.01c in chromosome I| Length = 580 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +2 Query: 110 DKESAQFTKAMPTPGCVAAGLRGEQSKLDEKEKKDMHEPRSRSSPHLTAP 259 + ES FTK P P + S L +++K H+ RS SS L P Sbjct: 423 EAESPHFTKRSPAPYLSKSFRNSALSLLLSQDEKLQHDVRSASSAALNLP 472
>LRP2_HHV1F (P17589) Latency-related protein 2| Length = 107 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 214 HARAPVPFVPSPDSAAPPNHVVALP---FPSFLHTHSPP 321 H+ AP P +P A P +H LP P+ H+H+PP Sbjct: 15 HSHAP-PLPRTPTPAHPHSHAPPLPRTPTPTHPHSHAPP 52
>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)| Length = 1054 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +2 Query: 137 AMPTPGCVAAGLRGEQSKLDEKEKKDMHEPRSRSSPHLTAP 259 A P P A L E LD K+D P+S SSP AP Sbjct: 769 APPMPIDSQASLTREDQPLDLSVKRDPLTPKSESSPPYIAP 809
>LRFN3_MOUSE (Q8BLY3) Leucine-rich repeat and fibronectin type-III| domain-containing protein 3 precursor Length = 626 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +1 Query: 148 PGMCRRRPPGGAIKT*REGKKRHARAPVPFVPSPDSAAPPNH-VVALPFPSFLHTHSP 318 PG + P ++ + G A PVP P+P+ AAP H VV L + +H P Sbjct: 570 PGKAKATAPVSSVCSQTNG----ALGPVPSAPAPEPAAPRAHTVVQLDCEPWGPSHEP 623
>DRAP1_HUMAN (Q14919) Dr1-associated corepressor (Dr1-associated protein 1)| (Negative co-factor 2 alpha) (NC2 alpha) Length = 204 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/51 (31%), Positives = 20/51 (39%) Frame = +2 Query: 164 AGLRGEQSKLDEKEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTP 316 +G EQ E D E S+ P + P S P PFLP + P Sbjct: 133 SGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLP 183
>DOF31_ARATH (Q94AR6) Dof zinc finger protein DOF3.1 (AtDOF3.1)| Length = 204 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Frame = +3 Query: 57 PRTYKTYI*NYNHHHMVQIKNPRSLPKQCRP--------RDVSPPASGGSNQNLTRRKKK 212 P T Y NYN + PR K CR R+V P GGS +N T+R Sbjct: 37 PNTKFCYYNNYN------LSQPRHFCKSCRRYWTKGGALRNV--PVGGGSRKNATKRSTS 88 Query: 213 TCTS 224 + +S Sbjct: 89 SSSS 92
>CJ047_HUMAN (Q86WR7) Protein C10orf47| Length = 435 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +1 Query: 196 REGKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPPERKKKA 339 +E +K+ A P P PD AP + P PS T PP R+ +A Sbjct: 137 KEHRKQDAETP----PPPDPPAPETLLAPPPLPS---TPDPPRRELRA 177
>LRP1_HHV1F (P17588) Latency-related protein 1| Length = 340 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +1 Query: 214 HARAP-VPFVPSPD---SAAPPNHVVALPFPSFLHTHSPP 321 H+ AP +P P+P S APP + P P+ H+H+PP Sbjct: 33 HSHAPPLPRTPTPSHPHSRAPP--LPRAPTPTHPHSHAPP 70
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -2 Query: 287 GRATT*FGGAALSGEGTNGTGARACLFFPSRQVLIAPPG 171 G A FGG++ SG G GA FP+++ + PG Sbjct: 221 GAAKMGFGGSSSSGFGGQKAGATESSGFPTKETSTSQPG 259
>SRD31_CAEEL (P91211) Serpentine receptor class delta-31 (Protein srd-31)| Length = 315 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +3 Query: 51 LGPRTYKTYI*NYNHHHMVQIKNPRSLPKQCRP 149 + P +Y ++ +Y + ++KNP+S P +C P Sbjct: 267 ISPFSYILFVPHYKNVITGKVKNPKSKPTKCNP 299
>DNAK_THET8 (Q56235) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 615 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +2 Query: 176 GEQSKLDEKEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEKK 334 G K D + + + E ++ L++ L +SLPF L ++TP EKK Sbjct: 241 GVDLKADRQALQRLIEAAEKAKIELSSTLETTISLPFIALDPASKTPLHLEKK 293
>DNAK_THET2 (Q72IK5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 615 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +2 Query: 176 GEQSKLDEKEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFLPSFTRTPHQKEKK 334 G K D + + + E ++ L++ L +SLPF L ++TP EKK Sbjct: 241 GVDLKADRQALQRLIEAAEKAKIELSSTLETTISLPFIALDPASKTPLHLEKK 293
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 27.3 bits (59), Expect = 9.6 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 8/81 (9%) Frame = +3 Query: 87 YNHHHMV--------QIKNPRSLPKQCRPRDVSPPASGGSNQNLTRRKKKTCTSPGPVRP 242 Y+HHH + QI P S D S +S G + + SP P + Sbjct: 818 YSHHHSILIGVTEPFQISLPTS-ESASSSTDSSGTSSEGEDDSTLELLAPKSRSPSPGKS 876 Query: 243 LT*QRRSTKSCRCPSLSFLPS 305 + RS R PSL+ PS Sbjct: 877 KRHRSRSPGLARFPSLALRPS 897
>EX5B_CHLMU (Q9PLT8) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1026 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 200 KEKKDMHEPRSRSSPHLTAPLHQIMSLPFPFL 295 KE + + + RS+P L L+ + SLP PFL Sbjct: 425 KESQLILDTNYRSTPQLMQALNHLFSLPSPFL 456
>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)| Length = 614 Score = 27.3 bits (59), Expect = 9.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +2 Query: 92 SSSYGTDKESAQFTKAMPTPGCVAAGLRGEQSKLDEKEKKDMHEPRSRSS 241 S S G +K+ A+ K + T G ++ K D+KEKKD E + + S Sbjct: 8 SRSEGEEKD-ARLAKKVKTDETPVDGEVKKERKKDKKEKKDKKEKKDKKS 56
>AMPH_CHICK (P50478) Amphiphysin| Length = 682 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +1 Query: 202 GKKRHARAPVP---FVPSPDSAAPPNHVVALPFPSFLHTHSPPERKK 333 G R A+ P P P P A PNH++A P+ SP + +K Sbjct: 253 GPLRIAKTPSPPEEVSPLPSPTASPNHMLAPASPAPARPKSPTQLRK 299
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 27.3 bits (59), Expect = 9.6 Identities = 24/83 (28%), Positives = 33/83 (39%) Frame = +3 Query: 90 NHHHMVQIKNPRSLPKQCRPRDVSPPASGGSNQNLTRRKKKTCTSPGPVRPLT*QRRSTK 269 NHH I + K+ R RD +PP + K ++ GP RR K Sbjct: 55 NHHEPNHIHDDERPAKRRRTRDSTPPQNTPKKMKPVSPPWKKISADGPTSYTENGRR--K 112 Query: 270 SCRCPSLSFLPSHALPTRKKKKS 338 S R +L PS +R K+S Sbjct: 113 SGRINTLLPEPSPLSKSRTSKRS 135
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/68 (29%), Positives = 25/68 (36%) Frame = +1 Query: 130 YQSNADPGMCRRRPPGGAIKT*REGKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHT 309 +QS RRR P R R+P P P P PP + P T Sbjct: 548 WQSPVTKSSRRRRSPSPP-------PARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRT 600 Query: 310 HSPPERKK 333 SPP R++ Sbjct: 601 PSPPPRRR 608
>PRGR_RAT (Q63449) Progesterone receptor (PR)| Length = 923 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 166 RPPGGAIKT*REGKKRHARAPVPFVPSPDSAAPPNHVVALPFPSFLHTHSPP 321 +PPG IK EG + +R+P P++ + SAA FP F PP Sbjct: 380 QPPGLKIKEEEEGTEAASRSPRPYLLAGASAA--------TFPDFPLPPRPP 423
>JUND_RAT (P52909) Transcription factor jun-D| Length = 341 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 169 PPGGAIKT*REGKKRHARAPVPFVPSPDSAAPP 267 PPGGA A PVPF P P + PP Sbjct: 196 PPGGAATV------AFAAEPVPFPPPPGALGPP 222
>JUND_MOUSE (P15066) Transcription factor jun-D| Length = 341 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 169 PPGGAIKT*REGKKRHARAPVPFVPSPDSAAPP 267 PPGGA A PVPF P P + PP Sbjct: 196 PPGGAATV------AFAAEPVPFPPPPGALGPP 222
>AMPH_MOUSE (Q7TQF7) Amphiphysin| Length = 686 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +1 Query: 202 GKKRHARAPVPFV---PSPDSAAPPNHVVALPFPSFLHTHSPPERKK 333 G R A+ P P P P A PNH +A P+ + SP + +K Sbjct: 253 GPLRIAKTPSPPEEPSPLPSPTASPNHTLAPASPAPVRPRSPSQTRK 299 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,290,627 Number of Sequences: 219361 Number of extensions: 1229463 Number of successful extensions: 4222 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4192 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
