>SYM_HAEIN (P43828) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 682

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
 Frame = +3

Query: 234 YLSQGGAVYTESTGHEAGASTYL---DPECYH-----RPDDFLKDLDF 353
           Y++  GA  ++S G    ASTYL   DPEC       + +D ++DLDF
Sbjct: 324 YVTVDGAKMSKSRGTFIQASTYLNHIDPECLRYYYAAKLNDRIEDLDF 371

>Y869_MYCLE (Q9CCF6) Hypothetical protein ML0869|
          Length = 229

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 253 RYIRNLLVMRRELPPIWTPSAIIALMIS 336
           RYIR+L+  RR    ++TPSA++ L I+
Sbjct: 124 RYIRDLVDARRNALGLFTPSALVLLFIT 151

>THIG_BORPE (Q7VTE5) Thiazole biosynthesis protein thiG|
          Length = 265

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 159 SMDSSYTKELTWLVRRTNCGQNFDE 233
           ++D+S T+ +T  +RRTN GQN DE
Sbjct: 34  ALDASGTQIVTVAIRRTNIGQNPDE 58

>THIG_BORPA (Q7W3P5) Thiazole biosynthesis protein thiG|
          Length = 265

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 159 SMDSSYTKELTWLVRRTNCGQNFDE 233
           ++D+S T+ +T  +RRTN GQN DE
Sbjct: 34  ALDASGTQIVTVAIRRTNIGQNPDE 58

>THIG_BORBR (Q7WF21) Thiazole biosynthesis protein thiG|
          Length = 265

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 159 SMDSSYTKELTWLVRRTNCGQNFDE 233
           ++D+S T+ +T  +RRTN GQN DE
Sbjct: 34  ALDASGTQIVTVAIRRTNIGQNPDE 58

>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP1
          Length = 3596

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 171  SYTKELTWLVRRTNCGQNFDEYLS---QGGAVYTESTGHEAGASTYLDPECYHRPDDFLK 341
            +Y+K L         GQ+  EY +    G  +   S G+  GA  YLD  CY  P D  K
Sbjct: 2928 AYSKSLPAARFSVPRGQDPAEYGTPALSGPTLQLLSAGYVPGAKHYLDEACYANPFDVFK 2987

>PRIB_VIBPA (Q87L73) Primosomal replication protein n|
          Length = 100

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 4   RRVRCKCEIFMYSLRSILIVAHLVQGSSIHV 96
           R+V C+  + +  LRS  I  +LVQGS+I V
Sbjct: 44  RQVYCRMPVVVSGLRSQAITQNLVQGSNIKV 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,603,764
Number of Sequences: 219361
Number of extensions: 995837
Number of successful extensions: 2572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2572
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)