>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)|
           (MURUS3 protein)
          Length = 619

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 24/81 (29%), Positives = 39/81 (48%)
 Frame = -2

Query: 425 VKIAETLAAVPDAEVRRMRERALEMAPRVLYRRHGSTAELREAGKDAVDLAVDGXXXXXX 246
           + I E L  +P  +V+ MRE  + + PR++Y    S  E +   KDA D++V        
Sbjct: 483 ISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQ---KDAFDVSVQAVIDKVT 539

Query: 245 XXXXXLEEGQPERIYAQEDDS 183
                + EG+ E  Y  E++S
Sbjct: 540 RLRKNMIEGRTEYDYFVEENS 560

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 252  PPERAVHGEVDRVLTRLPQLRGAPVSPVEHPGRHLQRALSHPPHLRVGHGRQRLSDLDAP 431
            P  RA  G  +R   + P+L   P++P  HP     + ++  P  R   GR+  S +  P
Sbjct: 1635 PTSRATRGRTNRSSVKTPELI-VPIAPEFHPSTSRSQLVTPEPTSRATRGRKNRSSVKTP 1693

Query: 432  E 434
            E
Sbjct: 1694 E 1694



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 252  PPERAVHGEVDRVLTRLPQLRGAPVSPVEHPGRHLQRALSHPPHLRVGHGRQRLSDLDAP 431
            P  RA  G  +R   + P+    P +P  HP     + ++  P  R   GR   S +  P
Sbjct: 1676 PTSRATRGRKNRSSVKTPE-PAVPTAPELHPTTSTDQPVTPKPTSRATRGRTNRSSVKTP 1734

Query: 432  E 434
            E
Sbjct: 1735 E 1735



 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 246  ANPPERAVHGEVDRVLTRLPQLRGAPVSPVEHPGRHLQRALSHPPHLRVGHGRQRLSDLD 425
            + P  R   G  +R   + P+    P +P  HP     + ++  P  R   GR   S + 
Sbjct: 1592 SEPTSRTTRGRKNRSSVKTPETV-VPTAPEPHPTTSTDQPITPKPTSRATRGRTNRSSVK 1650

Query: 426  APE 434
             PE
Sbjct: 1651 TPE 1653

>GPC3_HUMAN (P51654) Glypican-3 precursor (Intestinal protein OCI-5) (GTR2-2)|
           (MXR7)
          Length = 580

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 183 TVILLRVYPLRLAFLQRASPPANPPERAVHGEVDRVLTRL-PQLRGAPVSPVEHPGRHLQ 359
           T  L+    L L F  +A PP  PP+   H +V     RL P L+  P +PV  PG  LQ
Sbjct: 7   TACLVVAMLLSLDFPGQAQPPPPPPDATCH-QVRSFFQRLQPGLKWVPETPV--PGSDLQ 63

Query: 360 RALSHPP 380
             L   P
Sbjct: 64  VCLPKGP 70

>RL2_THEMA (P38510) 50S ribosomal protein L2|
          Length = 276

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 267 VHGEVDRV--LTRLPQLRGAPVSPVEHP-GRHLQRALSHPP 380
           VHG+  RV  L R P +RG  ++PV+HP G    R   H P
Sbjct: 205 VHGKAGRVRWLGRRPHVRGVAMNPVDHPHGGGEGRGKGHHP 245

>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +3

Query: 225 LQRASPPANPPERAVHGEVDRVLTRLPQLRGAPVSPVEHPGRHLQRALSHPPHLRVGHGR 404
           +QR  P A PPER  HG   R    L  +R   + P      HL   +     +   +G 
Sbjct: 94  VQRRYPAAQPPERLYHGTATRF---LDSIRAQGLKPGARHHVHLSPDIRTALAVGTRYGV 150

Query: 405 QRLSDLDAPEHHR 443
             + ++DA   HR
Sbjct: 151 PVILEVDAQRMHR 163

>CT142_MOUSE (P59266) Protein C20orf142 homolog precursor|
          Length = 262

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 149 ALEDILLVWIWTFLCRAKSAVYFH 78
           AL  +  +W+W FLC   +AVYFH
Sbjct: 194 ALGFLTFIWVWMFLC---TAVYFH 214

>LSHB_SHEEP (P01231) Lutropin beta chain precursor (Luteinizing hormone beta|
           subunit) (LSH-beta) (LSH-B) (LH-B) (Interstitial
           cell-stimulating hormone) [Contains: LH beta 1; LH beta
           2; LH beta 3]
          Length = 141

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 101 HDIKMSKSRLRECPQ--EHFISFRSPTSRHCHPPARISSPAGLPPAREPACE 250
           H+++ +  RL  CP   +  +SF    S HC P    S+  G P  +  AC+
Sbjct: 80  HELRFASVRLPGCPPGVDPMVSFPVALSCHCGPCRLSSTDCGGPRTQPLACD 131

>LSHB_BOVIN (P04651) Lutropin beta chain precursor (Luteinizing hormone beta|
           subunit) (LSH-beta) (LSH-B) (LH-B)
          Length = 141

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 101 HDIKMSKSRLRECPQ--EHFISFRSPTSRHCHPPARISSPAGLPPAREPACE 250
           H+++ +  RL  CP   +  +SF    S HC P    S+  G P  +  AC+
Sbjct: 80  HELRFASVRLPGCPPGVDPMVSFPVALSCHCGPCRLSSTDCGGPRTQPLACD 131

>LSHB_CERSI (O77835) Lutropin beta chain precursor (Luteinizing hormone beta|
           subunit) (LSH-beta) (LSH-B) (LH-B)
          Length = 141

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 101 HDIKMSKSRLRECPQ--EHFISFRSPTSRHCHPPARISSPAGLPPAREPACE 250
           H+++ +  RL  CP   +  +SF    S  C P    SS  G P A+  AC+
Sbjct: 80  HELRFASIRLPGCPPGVDPMVSFPVALSCRCGPCRLSSSDCGGPRAQPLACD 131

>MBB1A_RAT (O35821) Myb-binding protein 1A (PAR-interacting protein) (PIP)|
          Length = 1344

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 225  LQRASPPANPPERAVHGEVDRVLTRLPQLRGA-PVSPVEHPGRHLQRALS 371
            L  ++PPA  P+      V +   +L Q+ G+ PVSPVE   +  Q+ALS
Sbjct: 1254 LSPSTPPAKTPK------VQKKKEKLSQVNGSTPVSPVEPESKKHQKALS 1297

>NDUB8_PONPY (Q5R4A8) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           8, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase ASHI subunit) (Complex
           I-ASHI) (CI-ASHI)
          Length = 186

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 YPLRLAFLQRASPPANPPERAVHGEV 281
           YP    +L+R   P+  PER VH E+
Sbjct: 161 YPYNNLYLERGGDPSKEPERVVHYEI 186

>NDUB8_HUMAN (O95169) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           8, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase ASHI subunit) (Complex
           I-ASHI) (CI-ASHI)
          Length = 186

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 YPLRLAFLQRASPPANPPERAVHGEV 281
           YP    +L+R   P+  PER VH E+
Sbjct: 161 YPYNNLYLERGGDPSKEPERVVHYEI 186

>TSC2_MOUSE (Q61037) Tuberin (Tuberous sclerosis 2 homolog protein)|
          Length = 1814

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +2

Query: 5    LACHICKENKSRG*HSKCTLFKAKDGSKLRILHDIKMSKSRLRECPQEHFISFRSPTSRH 184
            L CH+  +  S+  HS+           +  L  IK  + R+RE      + + +P+   
Sbjct: 1723 LLCHL--QMASQVHHSRSNPTDIYPSKWIARLRHIKRLRQRIRE-----EVHYSNPSLPL 1775

Query: 185  CHPPARISSPAGLPPA 232
             HPPA   +PA  P A
Sbjct: 1776 MHPPAHTKAPAQAPEA 1791

>GUN1_STRHA (P33682) Endoglucanase 1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase 1) (Cellulase I) (CMCASE I)
           (CEL1)
          Length = 321

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 439 WCSGASRSLRRWRPCPTRRCGGCESARWRWRPGCSTGDTG 320
           WC+ + R +      PTR  GG E   W   PG S G+ G
Sbjct: 264 WCNPSGRRIGT----PTRTGGGAEMLLWIKTPGESDGNCG 299

>UB72_DEIRA (Q9RV58) Protein DR1172|
          Length = 298

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 368 ERALEMAPRVLYRRHGSTAELREAGKDAVDLAVD 267
           ++A ++A  V     G+TAE+++AGK+  D A D
Sbjct: 77  DKAQDVAGEVKSAVAGATAEIKDAGKEVADTAKD 110

>WHI3_YEAST (P34761) Protein WHI3|
          Length = 661

 Score = 25.0 bits (53), Expect(2) = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 113 MSKSRLRECPQEHFISFRSPTSRHCHPPARISSPAGLPPAR 235
           ++ S +   PQ+     + P   H +P  + ++P  +PPAR
Sbjct: 447 VNTSDMNITPQKQNRFMQQPQPEHMYPVNQSNTPQKVPPAR 487



 Score = 21.6 bits (44), Expect(2) = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 216 LAFLQRASPPANPPER 263
           L+ L R  PPANP ++
Sbjct: 518 LSLLARIPPPANPADQ 533


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,444,202
Number of Sequences: 219361
Number of extensions: 1103139
Number of successful extensions: 4150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4145
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)