ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast27d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109342.2| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
2dbj|AK071226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
3dbj|AK068647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
4gb|AY108743.1| Zea mays PCO118444 mRNA sequence 119 6e-24
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
6dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
7gb|BT019249.1| Zea mays clone Contig922.F mRNA sequence 88 2e-14
8ref|NM_121183.3| Arabidopsis thaliana unknown protein AT5G11450 ... 58 2e-05
9emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, B... 58 2e-05
10gb|AY114705.1| Arabidopsis thaliana putative protein (At5g11450)... 58 2e-05
11gb|AY072412.1| Arabidopsis thaliana putative protein (At5g11450)... 58 2e-05
12ref|NM_192810.1| Oryza sativa (japonica cultivar-group), predic... 54 3e-04
13ref|NM_117174.2| Arabidopsis thaliana catalytic/ protein phospha... 42 1.0
14gb|AY133684.1| Arabidopsis thaliana clone C103114 unknown protei... 42 1.0
15emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, ... 42 1.0
16emb|AL049876.1|ATT22B4 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.0
17emb|BX833487.1|CNS0A0AN Arabidopsis thaliana Full-length cDNA Co... 42 1.0
18gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12 42 1.0
19emb|AL645494.6| Human DNA sequence from clone RP11-295L3 on chro... 40 4.1
20emb|AL512604.14| Human DNA sequence from clone RP11-220I1 on chr... 40 4.1
21gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, co... 40 4.1
22gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence 40 4.1
23gb|DQ140667.1| Uncultured bacterium clone nif1003308U15 dinitrog... 40 4.1 
>dbj|AK109342.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F07, full
            insert sequence
          Length = 1213

 Score =  123 bits (62), Expect = 4e-25
 Identities = 146/174 (83%)
 Strand = Plus / Minus

                                                                        
Query: 131  tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
            ||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 1031 tcaccaaaatctccatggatcctggtatggaggaacataattttctgtagggggtaggag 972

                                                                        
Query: 191  gtgaaaggatgccacggccttttgtagcaaaggtcccataaattcccactgcttgctgag 250
            ||||||||||||||| |  || ||||   |||| |||||| |||||||||||||||||||
Sbjct: 971  gtgaaaggatgccactgttttctgtaaagaaggccccatagattcccactgcttgctgag 912

                                                                  
Query: 251  agtggaggcatttaacgagtacaaaaagccgtctcgctcagcagtacatgctac 304
             || || ||||| || ||||||||  | || ||||| |||||||| || |||||
Sbjct: 911  tgttgaagcattcaaggagtacaagtaaccatctcgttcagcagtgcaggctac 858
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>dbj|AK071226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086L13, full
            insert sequence
          Length = 1162

 Score =  123 bits (62), Expect = 4e-25
 Identities = 146/174 (83%)
 Strand = Plus / Minus

                                                                        
Query: 131  tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
            ||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 1018 tcaccaaaatctccatggatcctggtatggaggaacataattttctgtagggggtaggag 959

                                                                        
Query: 191  gtgaaaggatgccacggccttttgtagcaaaggtcccataaattcccactgcttgctgag 250
            ||||||||||||||| |  || ||||   |||| |||||| |||||||||||||||||||
Sbjct: 958  gtgaaaggatgccactgttttctgtaaagaaggccccatagattcccactgcttgctgag 899

                                                                  
Query: 251  agtggaggcatttaacgagtacaaaaagccgtctcgctcagcagtacatgctac 304
             || || ||||| || ||||||||  | || ||||| |||||||| || |||||
Sbjct: 898  tgttgaagcattcaaggagtacaagtaaccatctcgttcagcagtgcaggctac 845
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>dbj|AK068647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158N13, full
           insert sequence
          Length = 1143

 Score =  123 bits (62), Expect = 4e-25
 Identities = 146/174 (83%)
 Strand = Plus / Minus

                                                                       
Query: 131 tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
           ||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 999 tcaccaaaatctccatggatcctggtatggaggaacataattttctgtagggggtaggag 940

                                                                       
Query: 191 gtgaaaggatgccacggccttttgtagcaaaggtcccataaattcccactgcttgctgag 250
           ||||||||||||||| |  || ||||   |||| |||||| |||||||||||||||||||
Sbjct: 939 gtgaaaggatgccactgttttctgtaaagaaggccccatagattcccactgcttgctgag 880

                                                                 
Query: 251 agtggaggcatttaacgagtacaaaaagccgtctcgctcagcagtacatgctac 304
            || || ||||| || ||||||||  | || ||||| |||||||| || |||||
Sbjct: 879 tgttgaagcattcaaggagtacaagtaaccatctcgttcagcagtgcaggctac 826
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>gb|AY108743.1| Zea mays PCO118444 mRNA sequence
          Length = 1127

 Score =  119 bits (60), Expect = 6e-24
 Identities = 153/184 (83%)
 Strand = Plus / Minus

                                                                       
Query: 131 tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
           ||||||||| ||||| ||||||| ||| ||||||||||| || |||||   |||||| ||
Sbjct: 972 tcaccaaaatctccaaggatccttgtagggaggaacatagttttctgtaccggggagaag 913

                                                                       
Query: 191 gtgaaaggatgccacggccttttgtagcaaaggtcccataaattcccactgcttgctgag 250
           | ||||||||||||||| ||||||||| || || |||||| |||||||||| ||||| ||
Sbjct: 912 gcgaaaggatgccacggtcttttgtagaaagggccccatagattcccactgtttgctaag 853

                                                                       
Query: 251 agtggaggcatttaacgagtacaaaaagccgtctcgctcagcagtacatgctacactgtg 310
           |||||| ||||| |  |||||||   | || || ||||||||||| || |||||| ||||
Sbjct: 852 agtggaagcattcagtgagtacaggtacccatcacgctcagcagtgcaggctacattgtg 793

               
Query: 311 ccga 314
           ||||
Sbjct: 792 ccga 789
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                            
Query: 131      tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
                ||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 24571485 tcaccaaaatctccatggatcctggtatggaggaacataattttctgtagggggtaggag 24571426

                               
Query: 191      gtgaaaggatgccac 205
                |||||||||||||||
Sbjct: 24571425 gtgaaaggatgccac 24571411



 Score = 46.1 bits (23), Expect = 0.067
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 232      attcccactgcttgctgagagtggaggcatttaacgagtacaa 274
                ||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 24571264 attcccactgcttgctgagtgttgaagcattcaaggagtacaa 24571222
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                          
Query: 131    tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
              ||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 151869 tcaccaaaatctccatggatcctggtatggaggaacataattttctgtagggggtaggag 151810

                             
Query: 191    gtgaaaggatgccac 205
              |||||||||||||||
Sbjct: 151809 gtgaaaggatgccac 151795



 Score = 46.1 bits (23), Expect = 0.067
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 232    attcccactgcttgctgagagtggaggcatttaacgagtacaa 274
              ||||||||||||||||||| || || ||||| || ||||||||
Sbjct: 151648 attcccactgcttgctgagtgttgaagcattcaaggagtacaa 151606
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>gb|BT019249.1| Zea mays clone Contig922.F mRNA sequence
          Length = 1086

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/132 (83%)
 Strand = Plus / Plus

                                                                       
Query: 131 tcaccaaaacctccacggatcctggtaaggaggaacatatttctctgttggggggaggag 190
           ||||||||| ||||| ||||||| ||| ||||||||||| || ||||| || ||||| ||
Sbjct: 226 tcaccaaaatctccaaggatccttgtagggaggaacatagttttctgtaggtgggagaag 285

                                                                       
Query: 191 gtgaaaggatgccacggccttttgtagcaaaggtcccataaattcccactgcttgctgag 250
           | |||| ||||| || | || ||| || || ||||||||| |||||||||| ||||| ||
Sbjct: 286 gcgaaatgatgcaacagtctgttgcagaaagggtcccatagattcccactgtttgctaag 345

                       
Query: 251 agtggaggcatt 262
           |||||| |||||
Sbjct: 346 agtggaagcatt 357
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>ref|NM_121183.3| Arabidopsis thaliana unknown protein AT5G11450 mRNA, complete cds
          Length = 1137

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 129 catcaccaaaacctccacggatcctggtaaggaggaacata 169
           ||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 941 catcaccaaaacctccatggatccttgtatggaggaacata 901
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>emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project)
          Length = 101665

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 129   catcaccaaaacctccacggatcctggtaaggaggaacata 169
             ||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 18165 catcaccaaaacctccatggatccttgtatggaggaacata 18125
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>gb|AY114705.1| Arabidopsis thaliana putative protein (At5g11450) mRNA, complete
           cds
          Length = 1014

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 129 catcaccaaaacctccacggatcctggtaaggaggaacata 169
           ||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 896 catcaccaaaacctccatggatccttgtatggaggaacata 856
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>gb|AY072412.1| Arabidopsis thaliana putative protein (At5g11450) mRNA, complete
           cds
          Length = 1124

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 129 catcaccaaaacctccacggatcctggtaaggaggaacata 169
           ||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 941 catcaccaaaacctccatggatccttgtatggaggaacata 901
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>ref|NM_192810.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 131 tcaccaaaacctccacggatcctggtaaggaggaacata 169
           ||||||||| ||||| ||||||||||| |||||||||||
Sbjct: 950 tcaccaaaatctccatggatcctggtatggaggaacata 912



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 attcccactgcttgctgagagtggaggcatttaacgagtacaaaaagccgtctcgctcag 291
           ||||||||||||||||||| || || ||||| || ||||||||  | || ||||| ||||
Sbjct: 904 attcccactgcttgctgagtgttgaagcattcaaggagtacaagtaaccatctcgttcag 845

                        
Query: 292 cagtacatgctac 304
           |||| || |||||
Sbjct: 844 cagtgcaggctac 832
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>ref|NM_117174.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C
           AT4G11040 mRNA, complete cds
          Length = 919

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 185 gaggaggtgaaaggatgccacggcc 209
           ||||||||||||| |||||||||||
Sbjct: 388 gaggaggtgaaagcatgccacggcc 412
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>gb|AY133684.1| Arabidopsis thaliana clone C103114 unknown protein (At4g11040)
           mRNA, complete cds
          Length = 918

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 185 gaggaggtgaaaggatgccacggcc 209
           ||||||||||||| |||||||||||
Sbjct: 388 gaggaggtgaaagcatgccacggcc 412
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>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30
          Length = 198136

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 185    gaggaggtgaaaggatgccacggcc 209
              ||||||||||||| |||||||||||
Sbjct: 183200 gaggaggtgaaagcatgccacggcc 183224
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>emb|AL049876.1|ATT22B4 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project)
          Length = 108598

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 185   gaggaggtgaaaggatgccacggcc 209
             ||||||||||||| |||||||||||
Sbjct: 17597 gaggaggtgaaagcatgccacggcc 17621
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>emb|BX833487.1|CNS0A0AN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL58ZH12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 967

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 129 catcaccaaaacctccacggatcctggtaaggaggaacata 169
           |||||||||| |||||| ||||||| ||  |||||||||||
Sbjct: 931 catcaccaaatcctccatggatccttgtttggaggaacata 891
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>gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12
          Length = 103673

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 185  gaggaggtgaaaggatgccacggcc 209
            ||||||||||||| |||||||||||
Sbjct: 1549 gaggaggtgaaagcatgccacggcc 1525
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>emb|AL645494.6| Human DNA sequence from clone RP11-295L3 on chromosome 1, complete
             sequence
          Length = 14500

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ctggtaaggaggaacatatt 171
             ||||||||||||||||||||
Sbjct: 10339 ctggtaaggaggaacatatt 10358
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>emb|AL512604.14| Human DNA sequence from clone RP11-220I1 on chromosome 9 Contains two
              novel genes, the 5' end of a novel gene (FLJ22611), an
              RPL21 psueodgene and two CpG islands, complete sequence
          Length = 176503

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     gtgtaaaacattaagtcatt 99
              ||||||||||||||||||||
Sbjct: 135730 gtgtaaaacattaagtcatt 135749
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>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence
          Length = 149542

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aaaacattaagtcattagat 103
             ||||||||||||||||||||
Sbjct: 11302 aaaacattaagtcattagat 11321
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>gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence
          Length = 149951

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aaaacattaagtcattagat 103
              ||||||||||||||||||||
Sbjct: 130020 aaaacattaagtcattagat 130039
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>gb|DQ140667.1| Uncultured bacterium clone nif1003308U15 dinitrogen reductase
           (nifH) gene, partial cds
          Length = 324

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  atctagatttcgtttcttac 31
           ||||||||||||||||||||
Sbjct: 221 atctagatttcgtttcttac 240


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,634,199
Number of Sequences: 3902068
Number of extensions: 2634199
Number of successful extensions: 45865
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45818
Number of HSP's gapped (non-prelim): 43
length of query: 314
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 292
effective length of database: 17,147,199,772
effective search space: 5006982333424
effective search space used: 5006982333424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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